jgi.p|Nanoce1779_2|577181, mRNA_388 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577181
Unique Name	mRNA_388
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1010
Alignment location	scaffold_3:968609..970652 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577267
Track	FilteredModels2
ProteinId	577181

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:968609..970652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577181	gene_388	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577181	mRNA_388-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_388	CDS_388	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:968609..970652+
coding sequence from alignment at scaffold_3:968609..970652+

mRNA sequence

>mRNA_388 ID=mRNA_388|Name=jgi.p|Nanoce1779_2|577181|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp
AACAATAGGAAAAGAAGAGAGAGTCTCGACTTCGTCGTCGACCCTTTTTC
CTCCGTGCTGCACGCTCCCGAATTCGAAGCGCCAGTGCATGCGAATCCAG
AAGACGGTTTCTAGTCACGTGTACACTACTAGCCTCTTACTACTCCTTCT
CATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTGACGGTGA
AGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCACTGTGGCC
GGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAGGCACGTC
GGTCCTGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCGGATACAT
TGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCGGTTGAAC
ACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTTCTGATTT
CCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGACTTGAATG
CCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTACTTGAGG
GCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGAATGAGGT
GCTGGTGGGTGGGTACAAGGACGGCAAGCCTTTCCTCGGCCACCTGGACA
TGATCGGCACGGCATTCTCCGACGATGTGATGGCCACGGGCTTCGGGTCT
TACCTTGCGTTGCCCATTATGCGCAAACGATGGCACGAAAACATGACGGA
GGGGGAGGCCCGGGCGTTGTTGGAGGACTGCATGCGTGTGCTGTTCTACA
GGGACTGCCGTGCATTGAACAGGATACAGATCGCCAAGGCGGATGCGAGT
GGCGTGCTGGTCTCGCCGGCGTTTAAATTGGAGACAGTCTGGGACCTCGC
GTCGTTTTCGGCGCCCAAGGCAGGCATGGACTCGGACGGGTCCTGGTAGA
GGGAGGGAGAGAGGGAGGGAGGGAGGGAAGGGAGGGGAGAGGAGGCAAGG
AGAGAGAGAG

protein sequence of jgi.p|Nanoce1779_2|577181

>mRNA_388-protein ID=mRNA_388-protein|Name=jgi.p|Nanoce1779_2|577181|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MRIQKTVSSHVYTTSLLLLLLIVSVQSETTNMFGVTVKNNGLTGTAAAGT
ATVAGAGPSKRTHSPMVTGTSVLGVKYNGGVMLAADTLASYGSLARFKDV
TRLNTVGEHTILGAGGEFSDFQAIGEMLEKLHQDDLNANDGFAHSPAELF
HYLRAIFYSKRNKFNPLWNEVLVGGYKDGKPFLGHLDMIGTAFSDDVMAT
GFGSYLALPIMRKRWHENMTEGEARALLEDCMRVLFYRDCRALNRIQIAK
ADASGVLVSPAFKLETVWDLASFSAPKAGMDSDGSW*

mRNA from alignment at scaffold_3:968609..970652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_388 ID=mRNA_388|Name=jgi.p|Nanoce1779_2|577181|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at scaffold_3:968609..970652+ (Nannochloropsis oceanica)
AACAATAGGAAAAGAAGAGAGAGTCTCGACTTCGTCGTCGACCCTTTTTC
CTCCGTGCTGCACGCTCCCGAATTCGAAGCGCCAGTGCATGCGAATCCAG
AAGACGGTTTCTAGTCACGTGGTACGTCATTGTGTGGTGGCTTGTGGGTT
GATAAGGTGGTAATGGTAGTCGTGGTCGTGAGGTTGCTCTGGGGAAGAGG
GGCTGGAATTCGCTGCCACTGCCCGCATGTGATGATGTTGCCTGCCCGGG
GGAGAGACAAAGAGGATGGACCTGTGAAAATTCGTCGTCCTTTGAGGCTT
TGCTATGTTATCGTTCAGCGGCCTGTTGCCAGGAGCTGGCATGGTTGTGG
GGCGTCTGTTTTTTCATTGGCGGTCAGGTCTTACCTGCGCGTTGATGTGA
TGATGCCGCGGCGGGGACATGGCGGCAGCAGCTGCAACACTGCAAGAGTA
GCAGTGCATGTTCGTAATCCGTACCGCATCATCGGCGCCCTGTTACGCGT
TGATGTGATGATACCGCGGCGGGGACATGGCGGCAGCAGCTGCAACACTG
CAATAGCAGCAGTGCATGTTCGTAATCTGTACCGCATCATCGACGCACTG
TTACGCAGTGTCTTGTTGCCGAGTCTTGCACTTACGTCTGCTGCGCGCAA
ATATGCTGTCTCACCCTCTCTTCTCCCTCTTCCCCCTCCTTTCTTCCTCC
TTCCTTTCCTTCTCTATTCCCAAAACAGTACACTACTAGCCTCTTACTAC
TCCTTCTCATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTG
ACGGTGAAGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCAC
TGTGGCCGGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAG
GCACGTCGGTCCTGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCG
GATACATTGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCG
GTTGAACACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTT
CTGATTTCCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGAC
TTGAATGCCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTA
CTTGAGGGCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGA
ATGAGGTAGGGAAGGAGGGAGGGAGGGAGGGACGGATGGAGGGAGGGAAG
GGTGCATACAAGCCCTGTTTTTATTTCCTGAATTCAGGTCTTGCCTGATA
GATACAAGGAGGCCATGCCTTTGCTTTGTCACCTGGAGAGGATAGAGATG
GAATTTGAGAGGGTGTGCAGGCGATTGACGCTTCCTTCCTTCCCTCCCTC
CCTCCCTCCGTTGTTCCCTCACACGACCCCAGGTGCTGGTGGGTGGGTAC
AAGGACGGCAAGCCTTTCCTCGGCCACCTGGACATGATCGGCACGGCATT
CTCCGACGATGTGATGGCCACGGGCTTCGGGTCTTACCTTGCGTTGCCCA
TTATGCGCAAACGATGGCACGAAAACATGACGGAGGGGGAGGCCCGGGCG
TTGTTGGAGGACTGCATGCGTGTGCTGTTCTACAGGTTCGTCGCCTTTTT
GCACGTCCGTGGGCGTAGTGAAGGCTAATAATCATCTTGGATGTACCCGG
CCCCTTCCTTTTTCATGTGTCGATGGGTCATTCGTTTAATCCATGCCTCC
TCAAATCCACGCACTTCCCCCCCCCCCCCCCCCGGGCCTCTGCCTCCCTC
CTTCCCTTTCTTCCTTCTTTTTTGTTTTTCGACAGGGACTGCCGTGCATT
GAACAGGATACAGATCGCCAAGGCGGATGCGAGTGGCGTGCTGGTCTCGC
CGGCGTTTAAATTGGAGACAGTCTGGGACCTCGCGTCGTTTTCGGCGCCC
AAGGCAGGCATGGACTCGGACGGGTCCTGGTAGAGGGAGGGAGAGAGGGA
GGGAGGGAGGGAAGGGAGGGGAGAGGAGGCAAGGAGAGAGAGAG

Coding sequence (CDS) from alignment at scaffold_3:968609..970652+

>mRNA_388 ID=mRNA_388|Name=jgi.p|Nanoce1779_2|577181|organism=Nannochloropsis oceanica|type=CDS|length=3444bp|location=Sequence derived from alignment at scaffold_3:968609..970652+ (Nannochloropsis oceanica)
ATGCGAATCCAGAAGACGGTTTCTAGTCACGTGTACACTACTAGCCTCTT
ACTACTCCTTCTCATCGTCAGCGTTCAATCCGAAACGACCAACATGTTCG
GCGTGACGGTGAAGAACAATGGTCTTACCGGCACAGCTGCTGCTGGCACT
GCCACTGTGGCCGGGGCTGGCCCGAGCAAACGCACGCACTCCCCTATGGT
GACAGGCACGTCGGTCCTGGGCGTTAAGTACAACGGTGGTGTGATGCTTG
CCGCGGATACATTGGCCTCGTACGGTTCCTTGGCGCGATTCAAGGACGTG
ACGCGGTTGAACACGGTGGGGGAGCATACCATTTTGGGGGCTGGAGGAGA
ATTTTCTGATTTCCAGGCGATCGGGGAGATGCTCGAGAAGCTACACCAGG
ATGACTTGAATGCCAATGATGGCTTCGCCCACTCCCCCGCCGAGCTATTT
CATTACTTGAGGGCAATTTTTTACAGCAAGCGAAACAAGTTCAATCCGTT
GTGGAATGAGGTGCTGGTGGGTGGGTACAAGGACGGCAAGCCTTTCCTCG
GCCACCTGGACATGATCGGCACGGCATTCTCCGACGATGTGATGGCCACG
GGCTTCGGGTCTTACCTTGCGTTGCCCATTATGCGCAAACGATGGCACGA
AAACATGACGGAGGGGGAGGCCCGGGCGTTGTTGGAGGACTGCATGCGTG
TGCTGTTCTACAGGGACTGCCGTGCATTGAACAGGATACAGATCGCCAAG
GCGGATGCGAGTGGCGTGCTGGTCTCGCCGGCGTTTAAATTGGAGACAGT
CTGGGACCTCGCGTCGTTTTCGGCGCCCAAGGCAGGCATGGACTCGGACG
GGTCCTGGTAGATGCGAATCCAGAAGACGGTTTCTAGTCACGTGTACACT
ACTAGCCTCTTACTACTCCTTCTCATCGTCAGCGTTCAATCCGAAACGAC
CAACATGTTCGGCGTGACGGTGAAGAACAATGGTCTTACCGGCACAGCTG
CTGCTGGCACTGCCACTGTGGCCGGGGCTGGCCCGAGCAAACGCACGCAC
TCCCCTATGGTGACAGGCACGTCGGTCCTGGGCGTTAAGTACAACGGTGG
TGTGATGCTTGCCGCGGATACATTGGCCTCGTACGGTTCCTTGGCGCGAT
TCAAGGACGTGACGCGGTTGAACACGGTGGGGGAGCATACCATTTTGGGG
GCTGGAGGAGAATTTTCTGATTTCCAGGCGATCGGGGAGATGCTCGAGAA
GCTACACCAGGATGACTTGAATGCCAATGATGGCTTCGCCCACTCCCCCG
CCGAGCTATTTCATTACTTGAGGGCAATTTTTTACAGCAAGCGAAACAAG
TTCAATCCGTTGTGGAATGAGGTGCTGGTGGGTGGGTACAAGGACGGCAA
GCCTTTCCTCGGCCACCTGGACATGATCGGCACGGCATTCTCCGACGATG
TGATGGCCACGGGCTTCGGGTCTTACCTTGCGTTGCCCATTATGCGCAAA
CGATGGCACGAAAACATGACGGAGGGGGAGGCCCGGGCGTTGTTGGAGGA
CTGCATGCGTGTGCTGTTCTACAGGGACTGCCGTGCATTGAACAGGATAC
AGATCGCCAAGGCGGATGCGAGTGGCGTGCTGGTCTCGCCGGCGTTTAAA
TTGGAGACAGTCTGGGACCTCGCGTCGTTTTCGGCGCCCAAGGCAGGCAT
GGACTCGGACGGGTCCTGGTAGATGCGAATCCAGAAGACGGTTTCTAGTC
ACGTGTACACTACTAGCCTCTTACTACTCCTTCTCATCGTCAGCGTTCAA
TCCGAAACGACCAACATGTTCGGCGTGACGGTGAAGAACAATGGTCTTAC
CGGCACAGCTGCTGCTGGCACTGCCACTGTGGCCGGGGCTGGCCCGAGCA
AACGCACGCACTCCCCTATGGTGACAGGCACGTCGGTCCTGGGCGTTAAG
TACAACGGTGGTGTGATGCTTGCCGCGGATACATTGGCCTCGTACGGTTC
CTTGGCGCGATTCAAGGACGTGACGCGGTTGAACACGGTGGGGGAGCATA
CCATTTTGGGGGCTGGAGGAGAATTTTCTGATTTCCAGGCGATCGGGGAG
ATGCTCGAGAAGCTACACCAGGATGACTTGAATGCCAATGATGGCTTCGC
CCACTCCCCCGCCGAGCTATTTCATTACTTGAGGGCAATTTTTTACAGCA
AGCGAAACAAGTTCAATCCGTTGTGGAATGAGGTGCTGGTGGGTGGGTAC
AAGGACGGCAAGCCTTTCCTCGGCCACCTGGACATGATCGGCACGGCATT
CTCCGACGATGTGATGGCCACGGGCTTCGGGTCTTACCTTGCGTTGCCCA
TTATGCGCAAACGATGGCACGAAAACATGACGGAGGGGGAGGCCCGGGCG
TTGTTGGAGGACTGCATGCGTGTGCTGTTCTACAGGGACTGCCGTGCATT
GAACAGGATACAGATCGCCAAGGCGGATGCGAGTGGCGTGCTGGTCTCGC
CGGCGTTTAAATTGGAGACAGTCTGGGACCTCGCGTCGTTTTCGGCGCCC
AAGGCAGGCATGGACTCGGACGGGTCCTGGTAGATGCGAATCCAGAAGAC
GGTTTCTAGTCACGTGTACACTACTAGCCTCTTACTACTCCTTCTCATCG
TCAGCGTTCAATCCGAAACGACCAACATGTTCGGCGTGACGGTGAAGAAC
AATGGTCTTACCGGCACAGCTGCTGCTGGCACTGCCACTGTGGCCGGGGC
TGGCCCGAGCAAACGCACGCACTCCCCTATGGTGACAGGCACGTCGGTCC
TGGGCGTTAAGTACAACGGTGGTGTGATGCTTGCCGCGGATACATTGGCC
TCGTACGGTTCCTTGGCGCGATTCAAGGACGTGACGCGGTTGAACACGGT
GGGGGAGCATACCATTTTGGGGGCTGGAGGAGAATTTTCTGATTTCCAGG
CGATCGGGGAGATGCTCGAGAAGCTACACCAGGATGACTTGAATGCCAAT
GATGGCTTCGCCCACTCCCCCGCCGAGCTATTTCATTACTTGAGGGCAAT
TTTTTACAGCAAGCGAAACAAGTTCAATCCGTTGTGGAATGAGGTGCTGG
TGGGTGGGTACAAGGACGGCAAGCCTTTCCTCGGCCACCTGGACATGATC
GGCACGGCATTCTCCGACGATGTGATGGCCACGGGCTTCGGGTCTTACCT
TGCGTTGCCCATTATGCGCAAACGATGGCACGAAAACATGACGGAGGGGG
AGGCCCGGGCGTTGTTGGAGGACTGCATGCGTGTGCTGTTCTACAGGGAC
TGCCGTGCATTGAACAGGATACAGATCGCCAAGGCGGATGCGAGTGGCGT
GCTGGTCTCGCCGGCGTTTAAATTGGAGACAGTCTGGGACCTCGCGTCGT
TTTCGGCGCCCAAGGCAGGCATGGACTCGGACGGGTCCTGGTAG

Synonyms

Publications