jgi.p|Nanoce1779_2|585696, mRNA_3877 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585696
Unique NamemRNA_3877
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1012
Alignment locationscaffold_8:286902..287913 -

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Properties
Property NameValue
TranscriptId585782
TrackFilteredModels2
ProteinId585696
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:286902..287913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585696gene_3877Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585696mRNA_3877-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3877CDS_3877Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3877 ID=mRNA_3877|Name=jgi.p|Nanoce1779_2|585696|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp
CAATCAACAGCGATGATGCGAGACGGAAGGCTGAATGCTTCACTTCCGAA
TTATTACCACACCAATCATTGGACACATAACTTCGACAGGTGTGAGAGTA
CATTTTCAAGCAAGACAATGCTCTCCGCCCTGTAAGAAGTCCTCTTTCCC
GCCCGTCCCCCTACATGCTTCCTAGCCTCAGCCTGACTGCACGTACCCTC
CGGGGTATTCTCTCCTCCACTTCTGTCTCCTTATCGACTGTTGTCCCTCG
ACGCCATCGATTTCGGGCAACTGCAGCTGCTGCAGCTGCGACAGCCACTG
CTTTGCTGTGCTTCCCAGGCGTCACCTCATTCACCGTTGCCCCTCCTCTA
CGTCCTCGGGGTCACCCTCACTTCCACCCGGGCCCCATCCTCCTCCGCAT
GTATTCCTCCTCCTCCAACGGAGTTAGAAGCTCTTCATCTTCTCCGCCCT
TACCATCTCCCCTCCTCTTCGGTCCATACAAAATTTCGGCAGACCAAGTA
TTTTATCAATCCGCATACAGCACGGCCATCGTCAATCTTAAACCTCTAGT
CCCCTGTCACATCCTCGTCTTGCCTTACCGTGTCGTAGACCGTTTCGCAG
ACCTGCGCCCCGAGGAAGTAAGCGATTTATACCTTGCTGTGCATGAGATT
GGACCGGTGTTGGAAAGGATCAACGGAGGGGAGGGTTTGACGATTTCGAT
GCAGGACGGGAAGGCCGCGGGTCAGACGGTGCCTCACGTTCACGTCCACG
TGTTACCCAGAAAAGAAGGGGACTTCACTCCCAACGATCAAGTTTATGAG
GCGTTGGACGGAGTGCAGCTGCACAAGCATTTTGATTTGGATATAGAGAG
GAGGCCGAGGACGGAGGAGGACATGGCAGCGGAAGCGAGGTGGTTGAGGG
CGTTCTTCCCTCCGGAAAGGCAGCCACGGGCATAGAGTAGAAGGATAGAA
CGTGGTGAAGATTGACAATCACATAAAAGGGTGCAAATGAACAAGTGAAT
CGTAATTGGCTA
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protein sequence of jgi.p|Nanoce1779_2|585696

>mRNA_3877-protein ID=mRNA_3877-protein|Name=jgi.p|Nanoce1779_2|585696|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLPSLSLTARTLRGILSSTSVSLSTVVPRRHRFRATAAAAAATATALLCF
PGVTSFTVAPPLRPRGHPHFHPGPILLRMYSSSSNGVRSSSSSPPLPSPL
LFGPYKISADQVFYQSAYSTAIVNLKPLVPCHILVLPYRVVDRFADLRPE
EVSDLYLAVHEIGPVLERINGGEGLTISMQDGKAAGQTVPHVHVHVLPRK
EGDFTPNDQVYEALDGVQLHKHFDLDIERRPRTEEDMAAEARWLRAFFPP
ERQPRA*
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mRNA from alignment at scaffold_8:286902..287913-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3877 ID=mRNA_3877|Name=jgi.p|Nanoce1779_2|585696|organism=Nannochloropsis oceanica|type=mRNA|length=1012bp|location=Sequence derived from alignment at scaffold_8:286902..287913- (Nannochloropsis oceanica)
CAATCAACAGCGATGATGCGAGACGGAAGGCTGAATGCTTCACTTCCGAA
TTATTACCACACCAATCATTGGACACATAACTTCGACAGGTGTGAGAGTA
CATTTTCAAGCAAGACAATGCTCTCCGCCCTGTAAGAAGTCCTCTTTCCC
GCCCGTCCCCCTACATGCTTCCTAGCCTCAGCCTGACTGCACGTACCCTC
CGGGGTATTCTCTCCTCCACTTCTGTCTCCTTATCGACTGTTGTCCCTCG
ACGCCATCGATTTCGGGCAACTGCAGCTGCTGCAGCTGCGACAGCCACTG
CTTTGCTGTGCTTCCCAGGCGTCACCTCATTCACCGTTGCCCCTCCTCTA
CGTCCTCGGGGTCACCCTCACTTCCACCCGGGCCCCATCCTCCTCCGCAT
GTATTCCTCCTCCTCCAACGGAGTTAGAAGCTCTTCATCTTCTCCGCCCT
TACCATCTCCCCTCCTCTTCGGTCCATACAAAATTTCGGCAGACCAAGTA
TTTTATCAATCCGCATACAGCACGGCCATCGTCAATCTTAAACCTCTAGT
CCCCTGTCACATCCTCGTCTTGCCTTACCGTGTCGTAGACCGTTTCGCAG
ACCTGCGCCCCGAGGAAGTAAGCGATTTATACCTTGCTGTGCATGAGATT
GGACCGGTGTTGGAAAGGATCAACGGAGGGGAGGGTTTGACGATTTCGAT
GCAGGACGGGAAGGCCGCGGGTCAGACGGTGCCTCACGTTCACGTCCACG
TGTTACCCAGAAAAGAAGGGGACTTCACTCCCAACGATCAAGTTTATGAG
GCGTTGGACGGAGTGCAGCTGCACAAGCATTTTGATTTGGATATAGAGAG
GAGGCCGAGGACGGAGGAGGACATGGCAGCGGAAGCGAGGTGGTTGAGGG
CGTTCTTCCCTCCGGAAAGGCAGCCACGGGCATAGAGTAGAAGGATAGAA
CGTGGTGAAGATTGACAATCACATAAAAGGGTGCAAATGAACAAGTGAAT
CGTAATTGGCTA
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Coding sequence (CDS) from alignment at scaffold_8:286902..287913-

>mRNA_3877 ID=mRNA_3877|Name=jgi.p|Nanoce1779_2|585696|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_8:286902..287913- (Nannochloropsis oceanica)
ATGCTTCCTAGCCTCAGCCTGACTGCACGTACCCTCCGGGGTATTCTCTC
CTCCACTTCTGTCTCCTTATCGACTGTTGTCCCTCGACGCCATCGATTTC
GGGCAACTGCAGCTGCTGCAGCTGCGACAGCCACTGCTTTGCTGTGCTTC
CCAGGCGTCACCTCATTCACCGTTGCCCCTCCTCTACGTCCTCGGGGTCA
CCCTCACTTCCACCCGGGCCCCATCCTCCTCCGCATGTATTCCTCCTCCT
CCAACGGAGTTAGAAGCTCTTCATCTTCTCCGCCCTTACCATCTCCCCTC
CTCTTCGGTCCATACAAAATTTCGGCAGACCAAGTATTTTATCAATCCGC
ATACAGCACGGCCATCGTCAATCTTAAACCTCTAGTCCCCTGTCACATCC
TCGTCTTGCCTTACCGTGTCGTAGACCGTTTCGCAGACCTGCGCCCCGAG
GAAGTAAGCGATTTATACCTTGCTGTGCATGAGATTGGACCGGTGTTGGA
AAGGATCAACGGAGGGGAGGGTTTGACGATTTCGATGCAGGACGGGAAGG
CCGCGGGTCAGACGGTGCCTCACGTTCACGTCCACGTGTTACCCAGAAAA
GAAGGGGACTTCACTCCCAACGATCAAGTTTATGAGGCGTTGGACGGAGT
GCAGCTGCACAAGCATTTTGATTTGGATATAGAGAGGAGGCCGAGGACGG
AGGAGGACATGGCAGCGGAAGCGAGGTGGTTGAGGGCGTTCTTCCCTCCG
GAAAGGCAGCCACGGGCATAG
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Synonyms
Publications