jgi.p|Nanoce1779_2|585693, mRNA_3876 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585693
Unique Name	mRNA_3876
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1049
Alignment location	scaffold_8:285559..286894 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585779
Track	FilteredModels2
ProteinId	585693

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:285559..286894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585693	gene_3876	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585693	mRNA_3876-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3876	CDS_3876	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:285559..286894+
coding sequence from alignment at scaffold_8:285559..286894+

mRNA sequence

>mRNA_3876 ID=mRNA_3876|Name=jgi.p|Nanoce1779_2|585693|organism=Nannochloropsis oceanica|type=mRNA|length=1049bp
ACAGACAAAAGCCAGGCCAACGATAGGGTACTGCACGCGTTCTAGCCTGT
CACAATCCTCCTCCGCGCGACACATAGCGAAAGGAAGATGAGGCGCCTTT
CTTCCACGATCTTCGCACCCCGTCGAGGACTCTGCAGGGTGACGCTATCC
TCTGCAATTAACACCAGGACAAGACCAACACTCATGCCTAAGGTGTTGAG
AGCAACACATCCGTCCCAATCCGTCCGTCTCTTCAGCAAGAAAGACAAGA
AGAATACCGCCGCCCCCGCCCATCACACTGCTCCCCACCACAAGCATGCC
CCGTCCGTGGGTGGCACGACACACAACGAAGAACCACTGGTCGACTTGGC
GAAGCTACAAGCCAAAATGGAACGTGCCTTGACGACGCTGCAGAAAGAAT
TTTCGGGCGTGCGAGGCGGAAGACCCGACCCAGGAATGTTCGATCATTTG
CACGTTCAAGCCTATGGGAGAAGCACACCCTTGTCAGAGGTGGCACAGGT
GACTATCAAAAGCCCGACCCTCGCCGTTATCAACGTGTACGATCCGGAAG
TCCTTTCAAGCGTTAACGAAGCCATCAAAAGCAGCAAGCTGGAACTCAAT
CCCCGGGTTGACGGCAATGTGGTCTCAGTCCCCCTTCCTAAACCGTCTGC
GGAGACTCGAGAGAGCTACGTGAAATTAGTCAGTCGGTATACAGAAACGG
CCCGACAGAATATTAGAAAGGTCAGGAGGGAGGGCCTGGATAGAGTCAAG
AGAGGAGGGGAAGGAGGGAAGGAGGGAAGAACTGGCGTGGGCGAAGACGA
AGTTAGGAGAAATGAGAAATTGATAGAAGCCATGACGGAGGAGTGGGTAA
AAAAGGCGGGGGAAATGCTGGAGAGGAAAAGGAAGGAGATTTTGACTGTG
TAGAGGGTCGGCTCATGGAGAGGAAGACGTGAATGAAGGAGTGTTATGGA
GAGGAAACACAAACTCTTTGCGGGTGCTTTCGAGCAGAAAGAGCGGCGGA
AATTTATACGAAGAGAAAGAACGAAGATAGAATGACGAATAAGAGCAAC

protein sequence of jgi.p|Nanoce1779_2|585693

>mRNA_3876-protein ID=mRNA_3876-protein|Name=jgi.p|Nanoce1779_2|585693|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MRRLSSTIFAPRRGLCRVTLSSAINTRTRPTLMPKVLRATHPSQSVRLFS
KKDKKNTAAPAHHTAPHHKHAPSVGGTTHNEEPLVDLAKLQAKMERALTT
LQKEFSGVRGGRPDPGMFDHLHVQAYGRSTPLSEVAQVTIKSPTLAVINV
YDPEVLSSVNEAIKSSKLELNPRVDGNVVSVPLPKPSAETRESYVKLVSR
YTETARQNIRKVRREGLDRVKRGGEGGKEGRTGVGEDEVRRNEKLIEAMT
EEWVKKAGEMLERKRKEILTV*

mRNA from alignment at scaffold_8:285559..286894+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3876 ID=mRNA_3876|Name=jgi.p|Nanoce1779_2|585693|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp|location=Sequence derived from alignment at scaffold_8:285559..286894+ (Nannochloropsis oceanica)
ACAGACAAAAGCCAGGCCAACGATAGGGTACTGCACGCGTTCTAGCCTGT
CACAATCCTCCTCCGCGCGACACATAGCGAAAGGAAGATGAGGCGCCTTT
CTTCCACGATCTTCGCACCCCGTCGAGGACTCTGCAGGGTGACGCTATCC
TCTGCAATTAACACCAGGACAAGACCAACACTCATGCCTAAGGTGTTGAG
AGCAACACATCCGTCCCAATCCGTCCGTCTCTTCAGCAAGAAAGGTACGT
AAGTTAAGATTTAGAAGAGGCGGCGAGCTTGATAACCTCCTCCCCTTCAG
AATCCCCCCTCCTTCCATTCTGTTCCACCTCATTGGCTCTCCATGCACGT
CTACCCATCTCACCCTCCCACATCACCTCCTTTCCTTCTAGACAAGAAGA
ATACCGCCGCCCCCGCCCATCACACTGCTCCCCACCACAAGCATGCCCCG
TCCGTGGGTGGCACGACACACAACGAAGAACCACTGGTCGACTTGGCGAA
GCTACAAGCCAAAATGGAACGTGCCTTGACGACGCTGCAGAAAGAATTTT
CGGGCGTGCGAGGCGGAAGACCCGACCCAGGAATGTTCGATCATTTGCAC
GTTCAAGCCTATGGGAGAAGCACACCCTTGTCAGAGGTGGCACAGGTATG
AAAGTAGGGAAAGGGGAAAGAAGGGAGGGAGGGGGTATTGGAAAGTTGTA
ACAAAACGAGGAGAATACGCTTATACATTTGTTTACCCCTTCTCAAGTTA
CTTCCTCTGCTCCTCCGTTCTACCTTTCACTGTAGGTGACTATCAAAAGC
CCGACCCTCGCCGTTATCAACGTGTACGATCCGGAAGTCCTTTCAAGCGT
TAACGAAGCCATCAAAAGCAGCAAGCTGGAACTCAATCCCCGGGTTGACG
GCAATGTGGTCTCAGTCCCCCTTCCTAAACCGTCTGCGGAGACTCGAGAG
AGCTACGTGAAATTAGTCAGTCGGTATACAGAAACGGCCCGACAGAATAT
TAGAAAGGTCAGGAGGGAGGGCCTGGATAGAGTCAAGAGAGGAGGGGAAG
GAGGGAAGGAGGGAAGAACTGGCGTGGGCGAAGACGAAGTTAGGAGAAAT
GAGAAATTGATAGAAGCCATGACGGAGGAGTGGGTAAAAAAGGCGGGGGA
AATGCTGGAGAGGAAAAGGAAGGAGATTTTGACTGTGTAGAGGGTCGGCT
CATGGAGAGGAAGACGTGAATGAAGGAGTGTTATGGAGAGGAAACACAAA
CTCTTTGCGGGTGCTTTCGAGCAGAAAGAGCGGCGGAAATTTATACGAAG
AGAAAGAACGAAGATAGAATGACGAATAAGAGCAAC

Coding sequence (CDS) from alignment at scaffold_8:285559..286894+

>mRNA_3876 ID=mRNA_3876|Name=jgi.p|Nanoce1779_2|585693|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_8:285559..286894+ (Nannochloropsis oceanica)
ATGAGGCGCCTTTCTTCCACGATCTTCGCACCCCGTCGAGGACTCTGCAG
GGTGACGCTATCCTCTGCAATTAACACCAGGACAAGACCAACACTCATGC
CTAAGGTGTTGAGAGCAACACATCCGTCCCAATCCGTCCGTCTCTTCAGC
AAGAAAGACAAGAAGAATACCGCCGCCCCCGCCCATCACACTGCTCCCCA
CCACAAGCATGCCCCGTCCGTGGGTGGCACGACACACAACGAAGAACCAC
TGGTCGACTTGGCGAAGCTACAAGCCAAAATGGAACGTGCCTTGACGACG
CTGCAGAAAGAATTTTCGGGCGTGCGAGGCGGAAGACCCGACCCAGGAAT
GTTCGATCATTTGCACGTTCAAGCCTATGGGAGAAGCACACCCTTGTCAG
AGGTGGCACAGGTGACTATCAAAAGCCCGACCCTCGCCGTTATCAACGTG
TACGATCCGGAAGTCCTTTCAAGCGTTAACGAAGCCATCAAAAGCAGCAA
GCTGGAACTCAATCCCCGGGTTGACGGCAATGTGGTCTCAGTCCCCCTTC
CTAAACCGTCTGCGGAGACTCGAGAGAGCTACGTGAAATTAGTCAGTCGG
TATACAGAAACGGCCCGACAGAATATTAGAAAGGTCAGGAGGGAGGGCCT
GGATAGAGTCAAGAGAGGAGGGGAAGGAGGGAAGGAGGGAAGAACTGGCG
TGGGCGAAGACGAAGTTAGGAGAAATGAGAAATTGATAGAAGCCATGACG
GAGGAGTGGGTAAAAAAGGCGGGGGAAATGCTGGAGAGGAAAAGGAAGGA
GATTTTGACTGTGTAGATGAGGCGCCTTTCTTCCACGATCTTCGCACCCC
GTCGAGGACTCTGCAGGGTGACGCTATCCTCTGCAATTAACACCAGGACA
AGACCAACACTCATGCCTAAGGTGTTGAGAGCAACACATCCGTCCCAATC
CGTCCGTCTCTTCAGCAAGAAAGACAAGAAGAATACCGCCGCCCCCGCCC
ATCACACTGCTCCCCACCACAAGCATGCCCCGTCCGTGGGTGGCACGACA
CACAACGAAGAACCACTGGTCGACTTGGCGAAGCTACAAGCCAAAATGGA
ACGTGCCTTGACGACGCTGCAGAAAGAATTTTCGGGCGTGCGAGGCGGAA
GACCCGACCCAGGAATGTTCGATCATTTGCACGTTCAAGCCTATGGGAGA
AGCACACCCTTGTCAGAGGTGGCACAGGTGACTATCAAAAGCCCGACCCT
CGCCGTTATCAACGTGTACGATCCGGAAGTCCTTTCAAGCGTTAACGAAG
CCATCAAAAGCAGCAAGCTGGAACTCAATCCCCGGGTTGACGGCAATGTG
GTCTCAGTCCCCCTTCCTAAACCGTCTGCGGAGACTCGAGAGAGCTACGT
GAAATTAGTCAGTCGGTATACAGAAACGGCCCGACAGAATATTAGAAAGG
TCAGGAGGGAGGGCCTGGATAGAGTCAAGAGAGGAGGGGAAGGAGGGAAG
GAGGGAAGAACTGGCGTGGGCGAAGACGAAGTTAGGAGAAATGAGAAATT
GATAGAAGCCATGACGGAGGAGTGGGTAAAAAAGGCGGGGGAAATGCTGG
AGAGGAAAAGGAAGGAGATTTTGACTGTGTAGATGAGGCGCCTTTCTTCC
ACGATCTTCGCACCCCGTCGAGGACTCTGCAGGGTGACGCTATCCTCTGC
AATTAACACCAGGACAAGACCAACACTCATGCCTAAGGTGTTGAGAGCAA
CACATCCGTCCCAATCCGTCCGTCTCTTCAGCAAGAAAGACAAGAAGAAT
ACCGCCGCCCCCGCCCATCACACTGCTCCCCACCACAAGCATGCCCCGTC
CGTGGGTGGCACGACACACAACGAAGAACCACTGGTCGACTTGGCGAAGC
TACAAGCCAAAATGGAACGTGCCTTGACGACGCTGCAGAAAGAATTTTCG
GGCGTGCGAGGCGGAAGACCCGACCCAGGAATGTTCGATCATTTGCACGT
TCAAGCCTATGGGAGAAGCACACCCTTGTCAGAGGTGGCACAGGTGACTA
TCAAAAGCCCGACCCTCGCCGTTATCAACGTGTACGATCCGGAAGTCCTT
TCAAGCGTTAACGAAGCCATCAAAAGCAGCAAGCTGGAACTCAATCCCCG
GGTTGACGGCAATGTGGTCTCAGTCCCCCTTCCTAAACCGTCTGCGGAGA
CTCGAGAGAGCTACGTGAAATTAGTCAGTCGGTATACAGAAACGGCCCGA
CAGAATATTAGAAAGGTCAGGAGGGAGGGCCTGGATAGAGTCAAGAGAGG
AGGGGAAGGAGGGAAGGAGGGAAGAACTGGCGTGGGCGAAGACGAAGTTA
GGAGAAATGAGAAATTGATAGAAGCCATGACGGAGGAGTGGGTAAAAAAG
GCGGGGGAAATGCTGGAGAGGAAAAGGAAGGAGATTTTGACTGTGTAG

Synonyms

Publications