jgi.p|Nanoce1779_2|585687, mRNA_3873 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585687
Unique Name	mRNA_3873
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3739
Alignment location	scaffold_8:277961..281699 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585773
Track	FilteredModels2
ProteinId	585687

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:277961..281699 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585687	gene_3873	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585687	mRNA_3873-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3873	CDS_3873	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:277961..281699-
coding sequence from alignment at scaffold_8:277961..281699-

mRNA sequence

>mRNA_3873 ID=mRNA_3873|Name=jgi.p|Nanoce1779_2|585687|organism=Nannochloropsis oceanica|type=mRNA|length=3739bp
AAACCTGTCGTTTTCTGTCTCAGCTAACACTGGCCGCATCCGCGTCGAGT
ACCAAGAACCGGAGCAGGGAGGGAGAGGGAGGGAGGGAGGGCGCACTGTC
TGCTTCAATTTCTCTGTTGAAGAATTTTATTCCTTGATGGACGGAGAGAC
ATTGGAGCTTACCAATACCCCCTTCGAGGTACTGGGTCTCTGCTACCAGG
TGCTGGAGGGAGGGAGGGGATTACTGGTGCCTGCTGCTGCGTCTTCTCCT
GCTGTTGCCGTCCTGGTGGCGTGCGAGGAATTTGTAGAGGAGTGGGAGGA
GTTGAGGGGATGGGAGAAGATGATACTGATCGGGGAAGGAGGGAGGGAAA
GCGGGGAGAGAGGGAGGATGGAATTGAGGTTGCCGCTTGTGAAGCAGTTG
AAGGACGAGATGGAGAAGAGATGGAAGGTAGGGGATGGAATAGGAGGAGG
AGGAAAGGAACTTTGTTATGAGCGGTACGTGGATTATCGACAGGAGCAGC
AGCAGCAGCAACAGCAGCTACAAGGGGGCATTCCCCCCTACATACCCAAC
GCACAACGGCAACGGCAAAGGGTGGCAATGACGGCTGCCATCGCGTCACA
TAGCCAAGAAAGCAATAGCAACATCAGCAACAACTTTGACTACGTTAACG
GCGGCCGCGCGTCATCTTTTCCTTCCTCTCTCCCTCCTTCATCCAAGTCC
CCCCAGTGCAGCTTCTGCAAGACAATCATCACCGATCCCCTCCTCCTTCG
GGACCTTTCTCTTCGTCAGTCCCTAGCGTCCTCGTTTCCCGGCCCCAACC
CCGACCGGAAATTCAAATATAATGGTCCACGGCATCTTTACTGTTCTTAT
GCCTGCGGACAAGAAATCCTCCTTCGAGCCGGGTCCTCCTCCCTAATCCG
CCGTCAGATTTTTGCGCTCGAGCAGGGCGTCTGCCAGCTCTGTAATACTG
ATTGTCACGCCTTGTTCCTACATGTAAAGCGACTCACCCCACCGGAACGA
GTCCAATATTTTATGTCCTTGGAATGTGCATTTAAATGTGTGGATAAAGC
CGCGGTGCTCGATCCCAAAGAGGGGCATTTTTGGCAGGCTGACCATGTGT
TACCCGTCATCGAAGGAGGGGGGGCGTGTGGGCTTGATAACCTTCGGACG
TTGTGCACGCCTTGTCACGCGAAAGAAACAGCCCTTTTAAGGGTCCGGGG
GAGGGAAGGGAGAATGGAGAAGGCCGCGGAAGGGACGAGGGATATACGAA
CTTTTATTGTTGGGGATGGGAAGGGGGGAGGAAAGGGAAAGTAGTGTTGG
CAGCGGGGAATGGAGGGTTGGTGAACAACAGCTGCAGTGGCAATAACAGC
AACAGCAGAAAAAGTATCAGTAATAGATACAGCAACGAACGAGAAAGTAG
ATAGATGGATCAGTTCTTGTGTGTATAGAGAACATGTCGACAAACAAGAT
ATGGGAGCCATTAATGACTGATGACAACAACTGGGAATGGAGGTGGGACT
ACTCCTCCTGCCTCCTGCATGGTTTAACAGTGAAAAGAACAAGTATGATA
GATAAGCCGGTGCTGAAGATATGGCAGCCACGATTTAAACTGAAAAGGAT
ATGAAATAAAAAAGCACGATTGCACGCGAAAAAAAGTAAATACGCAATGT
GCAATCAAAGTGCGATCAAAGTGACTTATTATCATTCCTTCTTCTCTTCC
GCCATACACCCACCATCTATACAGGAAATTCTCAACAGCACCAACAGTGG
ATGTAGCAAGGAACGAGGGGAAAATGCTGCAAGACCACATGACCCTGGTT
TTCGACCGCATGACCGAGCCAGAGCTCCGCGCCTGGTTGGATGCCAACCC
TCATAGCGTCAATGCCCGAAATATGGATGGCGAGACCTGCCTGTTCCGTG
CCGTCAATCACTGGAAGAGCGCTTCATTGGTCATGTGGCTTGTAGAGCGA
GGGGTTAATGTAAATACCGCCGACATGTGCGGATACACTGCGATTCAATA
TGCGCGCTCAACCGAAATTCTTGATGCGCTGTTGCTTTCTGGTGCGGACC
CCACCATCCGGACGGAAAAGGGCTTCACGCTGTTGATGGCTGAGGTCCGC
TCACGTCGTTACGTGCTCGCGACTCATTTGCTGAAGGACTCGCGCATTCG
CACCCTCATCAACGCGCAAGACCAATTTGGAAACTCAGCATTGCACTTTG
TCTGCCATGATTTGGACGATCCCGCCGTGCATCCTCTCATTCTGCTTTTT
CTCAAATATGGAGCCAGTCTGATGCTTGAGGATGCGCGTGGAGAGACACC
CATGCGTTTACTTCAACGGCTTTACCCTACCAATCCCCTTACCATCACCT
TGGCCGACGAGATCCTAACCGTAGAGAAGACCGATGCCCTCGTCATGACC
GTCCGTAAAGTAATGGCGACGAAGAGTCCCGTCGCGACTTGCTTGCAACA
TCGCGTGGAGTGCGGCCGACCCTTACCTATAGTGGAAATGGCTCAGCAGT
CGTGTCTCAATGACGAGAAAAGGCTTCGGGTTGGGGTGGCGCTTTTGTCA
GGCGTGGGACGAAAGGGACTGCCGAGGGATATGTTTTGGGCAGTGCTGGA
TATGATTATGCCAGCATGGGACCCTTTGAGACGTTGTATGTCACCGCAGA
AGAAGCGAGTTACAATGAAAAGGGGAGGAGCAGAAAAGCCTATGGTGGGT
TAGGAGGATAGTGGCCGTATACTCAGCAATTATGAGGCCCTCCGTACCTC
GCGGCCATCCTCGTGGACACGAAGGGCTGGAGCATGCCGCGACTTGTGCT
CTTGGCTGTGATTGACATGATGAAGCTCACTGTCGCCACCAATACAAATG
CTGTGGCTCCATGTCAAAACACGTAAGGTGTGCAAGGCAGCATGGCCAGG
ACCGCCATCTCCCGCGCACGGCGCTGGCGCCGCTGAAGTTTCTCGATAGC
AATGGTGAGGACGAGGAGCGGGAGGAAGCAAGAGGCAAGCTTCGGACCAT
CCAGGTGGTCATGATTGTGTGAAAGGGGAACGGTAAACTGCAAATCGTGT
TTCGGGTGGTGATGGACTTGGTCATATGCCCTTTGGGACCTGCTGCAGTG
TAACATGCCAGGACTAGACGGACGACGGCAGCTCGGGTCGGGTTCAGAAG
TGTTGAAGGAGCAGTACTCTCGGCAGCAACAACAGCCGTAGCGGCAAGTG
AAATTAGTGCACAGAAGACAATTAAAGAATGAGATGTGTCAAGATATCGG
TCAACAATTATACCGTAAGTGAAGTGAGAGCGACAACATCGACCTACGAA
AGAAATTTAAAACGTCCAAAGCCCTCGACAAATACCTCGACTCCCTGGCC
GTGTCCAACATTCAAGAGATGCGTGATCGAATCCTGGAAAAGAGAGGCGA
CGTGCTCCGCGAAATGCTACCCGCAACGTTTGCCAAAGCATTCGACCAAG
TGGTAATGCATCTTACGAAGCAGAAGACTTTGGACTCACGGATAAAGGCG
AGACCGTCGCGGTTCAGGCAGCGCACATACCCTTTTCTATCTACATCGAG
CCCCCATATAACTCGGACAACGAAGAAATCACACGCAAATAGTTGTGTAC
TTACGACATCAGGATCACCCAAATAAAGAGAGAGTGGAAAGAAGACAACG
TAGTCTACTCTACACAAGGCATTTGTAGCGAACAACACCCAAAGAAAATG
CACAGCGGCAAGACCGCCGCATGTGAGCCCCACACAATC

protein sequence of jgi.p|Nanoce1779_2|585687

>mRNA_3873-protein ID=mRNA_3873-protein|Name=jgi.p|Nanoce1779_2|585687|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MDGETLELTNTPFEVLGLCYQVLEGGRGLLVPAAASSPAVAVLVACEEFV
EEWEELRGWEKMILIGEGGRESGERGRMELRLPLVKQLKDEMEKRWKVGD
GIGGGGKELCYERYVDYRQEQQQQQQQLQGGIPPYIPNAQRQRQRVAMTA
AIASHSQESNSNISNNFDYVNGGRASSFPSSLPPSSKSPQCSFCKTIITD
PLLLRDLSLRQSLASSFPGPNPDRKFKYNGPRHLYCSYACGQEILLRAGS
SSLIRRQIFALEQGVCQLCNTDCHALFLHVKRLTPPERVQYFMSLECAFK
CVDKAAVLDPKEGHFWQADHVLPVIEGGGACGLDNLRTLCTPCHAKETAL
LRVRGREGRMEKAAEGTRDIRTFIVGDGKGGGKGK*

mRNA from alignment at scaffold_8:277961..281699-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3873 ID=mRNA_3873|Name=jgi.p|Nanoce1779_2|585687|organism=Nannochloropsis oceanica|type=mRNA|length=3739bp|location=Sequence derived from alignment at scaffold_8:277961..281699- (Nannochloropsis oceanica)
AAACCTGTCGTTTTCTGTCTCAGCTAACACTGGCCGCATCCGCGTCGAGT
ACCAAGAACCGGAGCAGGGAGGGAGAGGGAGGGAGGGAGGGCGCACTGTC
TGCTTCAATTTCTCTGTTGAAGAATTTTATTCCTTGATGGACGGAGAGAC
ATTGGAGCTTACCAATACCCCCTTCGAGGTACTGGGTCTCTGCTACCAGG
TGCTGGAGGGAGGGAGGGGATTACTGGTGCCTGCTGCTGCGTCTTCTCCT
GCTGTTGCCGTCCTGGTGGCGTGCGAGGAATTTGTAGAGGAGTGGGAGGA
GTTGAGGGGATGGGAGAAGATGATACTGATCGGGGAAGGAGGGAGGGAAA
GCGGGGAGAGAGGGAGGATGGAATTGAGGTTGCCGCTTGTGAAGCAGTTG
AAGGACGAGATGGAGAAGAGATGGAAGGTAGGGGATGGAATAGGAGGAGG
AGGAAAGGAACTTTGTTATGAGCGGTACGTGGATTATCGACAGGAGCAGC
AGCAGCAGCAACAGCAGCTACAAGGGGGCATTCCCCCCTACATACCCAAC
GCACAACGGCAACGGCAAAGGGTGGCAATGACGGCTGCCATCGCGTCACA
TAGCCAAGAAAGCAATAGCAACATCAGCAACAACTTTGACTACGTTAACG
GCGGCCGCGCGTCATCTTTTCCTTCCTCTCTCCCTCCTTCATCCAAGTCC
CCCCAGTGCAGCTTCTGCAAGACAATCATCACCGATCCCCTCCTCCTTCG
GGACCTTTCTCTTCGTCAGTCCCTAGCGTCCTCGTTTCCCGGCCCCAACC
CCGACCGGAAATTCAAATATAATGGTCCACGGCATCTTTACTGTTCTTAT
GCCTGCGGACAAGAAATCCTCCTTCGAGCCGGGTCCTCCTCCCTAATCCG
CCGTCAGATTTTTGCGCTCGAGCAGGGCGTCTGCCAGCTCTGTAATACTG
ATTGTCACGCCTTGTTCCTACATGTAAAGCGACTCACCCCACCGGAACGA
GTCCAATATTTTATGTCCTTGGAATGTGCATTTAAATGTGTGGATAAAGC
CGCGGTGCTCGATCCCAAAGAGGGGCATTTTTGGCAGGCTGACCATGTGT
TACCCGTCATCGAAGGAGGGGGGGCGTGTGGGCTTGATAACCTTCGGACG
TTGTGCACGCCTTGTCACGCGAAAGAAACAGCCCTTTTAAGGGTCCGGGG
GAGGGAAGGGAGAATGGAGAAGGCCGCGGAAGGGACGAGGGATATACGAA
CTTTTATTGTTGGGGATGGGAAGGGGGGAGGAAAGGGAAAGTAGTGTTGG
CAGCGGGGAATGGAGGGTTGGTGAACAACAGCTGCAGTGGCAATAACAGC
AACAGCAGAAAAAGTATCAGTAATAGATACAGCAACGAACGAGAAAGTAG
ATAGATGGATCAGTTCTTGTGTGTATAGAGAACATGTCGACAAACAAGAT
ATGGGAGCCATTAATGACTGATGACAACAACTGGGAATGGAGGTGGGACT
ACTCCTCCTGCCTCCTGCATGGTTTAACAGTGAAAAGAACAAGTATGATA
GATAAGCCGGTGCTGAAGATATGGCAGCCACGATTTAAACTGAAAAGGAT
ATGAAATAAAAAAGCACGATTGCACGCGAAAAAAAGTAAATACGCAATGT
GCAATCAAAGTGCGATCAAAGTGACTTATTATCATTCCTTCTTCTCTTCC
GCCATACACCCACCATCTATACAGGAAATTCTCAACAGCACCAACAGTGG
ATGTAGCAAGGAACGAGGGGAAAATGCTGCAAGACCACATGACCCTGGTT
TTCGACCGCATGACCGAGCCAGAGCTCCGCGCCTGGTTGGATGCCAACCC
TCATAGCGTCAATGCCCGAAATATGGATGGCGAGACCTGCCTGTTCCGTG
CCGTCAATCACTGGAAGAGCGCTTCATTGGTCATGTGGCTTGTAGAGCGA
GGGGTTAATGTAAATACCGCCGACATGTGCGGATACACTGCGATTCAATA
TGCGCGCTCAACCGAAATTCTTGATGCGCTGTTGCTTTCTGGTGCGGACC
CCACCATCCGGACGGAAAAGGGCTTCACGCTGTTGATGGCTGAGGTCCGC
TCACGTCGTTACGTGCTCGCGACTCATTTGCTGAAGGACTCGCGCATTCG
CACCCTCATCAACGCGCAAGACCAATTTGGAAACTCAGCATTGCACTTTG
TCTGCCATGATTTGGACGATCCCGCCGTGCATCCTCTCATTCTGCTTTTT
CTCAAATATGGAGCCAGTCTGATGCTTGAGGATGCGCGTGGAGAGACACC
CATGCGTTTACTTCAACGGCTTTACCCTACCAATCCCCTTACCATCACCT
TGGCCGACGAGATCCTAACCGTAGAGAAGACCGATGCCCTCGTCATGACC
GTCCGTAAAGTAATGGCGACGAAGAGTCCCGTCGCGACTTGCTTGCAACA
TCGCGTGGAGTGCGGCCGACCCTTACCTATAGTGGAAATGGCTCAGCAGT
CGTGTCTCAATGACGAGAAAAGGCTTCGGGTTGGGGTGGCGCTTTTGTCA
GGCGTGGGACGAAAGGGACTGCCGAGGGATATGTTTTGGGCAGTGCTGGA
TATGATTATGCCAGCATGGGACCCTTTGAGACGTTGTATGTCACCGCAGA
AGAAGCGAGTTACAATGAAAAGGGGAGGAGCAGAAAAGCCTATGGTGGGT
TAGGAGGATAGTGGCCGTATACTCAGCAATTATGAGGCCCTCCGTACCTC
GCGGCCATCCTCGTGGACACGAAGGGCTGGAGCATGCCGCGACTTGTGCT
CTTGGCTGTGATTGACATGATGAAGCTCACTGTCGCCACCAATACAAATG
CTGTGGCTCCATGTCAAAACACGTAAGGTGTGCAAGGCAGCATGGCCAGG
ACCGCCATCTCCCGCGCACGGCGCTGGCGCCGCTGAAGTTTCTCGATAGC
AATGGTGAGGACGAGGAGCGGGAGGAAGCAAGAGGCAAGCTTCGGACCAT
CCAGGTGGTCATGATTGTGTGAAAGGGGAACGGTAAACTGCAAATCGTGT
TTCGGGTGGTGATGGACTTGGTCATATGCCCTTTGGGACCTGCTGCAGTG
TAACATGCCAGGACTAGACGGACGACGGCAGCTCGGGTCGGGTTCAGAAG
TGTTGAAGGAGCAGTACTCTCGGCAGCAACAACAGCCGTAGCGGCAAGTG
AAATTAGTGCACAGAAGACAATTAAAGAATGAGATGTGTCAAGATATCGG
TCAACAATTATACCGTAAGTGAAGTGAGAGCGACAACATCGACCTACGAA
AGAAATTTAAAACGTCCAAAGCCCTCGACAAATACCTCGACTCCCTGGCC
GTGTCCAACATTCAAGAGATGCGTGATCGAATCCTGGAAAAGAGAGGCGA
CGTGCTCCGCGAAATGCTACCCGCAACGTTTGCCAAAGCATTCGACCAAG
TGGTAATGCATCTTACGAAGCAGAAGACTTTGGACTCACGGATAAAGGCG
AGACCGTCGCGGTTCAGGCAGCGCACATACCCTTTTCTATCTACATCGAG
CCCCCATATAACTCGGACAACGAAGAAATCACACGCAAATAGTTGTGTAC
TTACGACATCAGGATCACCCAAATAAAGAGAGAGTGGAAAGAAGACAACG
TAGTCTACTCTACACAAGGCATTTGTAGCGAACAACACCCAAAGAAAATG
CACAGCGGCAAGACCGCCGCATGTGAGCCCCACACAATC

Coding sequence (CDS) from alignment at scaffold_8:277961..281699-

>mRNA_3873 ID=mRNA_3873|Name=jgi.p|Nanoce1779_2|585687|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_8:277961..281699- (Nannochloropsis oceanica)
ATGGACGGAGAGACATTGGAGCTTACCAATACCCCCTTCGAGGTACTGGG
TCTCTGCTACCAGGTGCTGGAGGGAGGGAGGGGATTACTGGTGCCTGCTG
CTGCGTCTTCTCCTGCTGTTGCCGTCCTGGTGGCGTGCGAGGAATTTGTA
GAGGAGTGGGAGGAGTTGAGGGGATGGGAGAAGATGATACTGATCGGGGA
AGGAGGGAGGGAAAGCGGGGAGAGAGGGAGGATGGAATTGAGGTTGCCGC
TTGTGAAGCAGTTGAAGGACGAGATGGAGAAGAGATGGAAGGTAGGGGAT
GGAATAGGAGGAGGAGGAAAGGAACTTTGTTATGAGCGGTACGTGGATTA
TCGACAGGAGCAGCAGCAGCAGCAACAGCAGCTACAAGGGGGCATTCCCC
CCTACATACCCAACGCACAACGGCAACGGCAAAGGGTGGCAATGACGGCT
GCCATCGCGTCACATAGCCAAGAAAGCAATAGCAACATCAGCAACAACTT
TGACTACGTTAACGGCGGCCGCGCGTCATCTTTTCCTTCCTCTCTCCCTC
CTTCATCCAAGTCCCCCCAGTGCAGCTTCTGCAAGACAATCATCACCGAT
CCCCTCCTCCTTCGGGACCTTTCTCTTCGTCAGTCCCTAGCGTCCTCGTT
TCCCGGCCCCAACCCCGACCGGAAATTCAAATATAATGGTCCACGGCATC
TTTACTGTTCTTATGCCTGCGGACAAGAAATCCTCCTTCGAGCCGGGTCC
TCCTCCCTAATCCGCCGTCAGATTTTTGCGCTCGAGCAGGGCGTCTGCCA
GCTCTGTAATACTGATTGTCACGCCTTGTTCCTACATGTAAAGCGACTCA
CCCCACCGGAACGAGTCCAATATTTTATGTCCTTGGAATGTGCATTTAAA
TGTGTGGATAAAGCCGCGGTGCTCGATCCCAAAGAGGGGCATTTTTGGCA
GGCTGACCATGTGTTACCCGTCATCGAAGGAGGGGGGGCGTGTGGGCTTG
ATAACCTTCGGACGTTGTGCACGCCTTGTCACGCGAAAGAAACAGCCCTT
TTAAGGGTCCGGGGGAGGGAAGGGAGAATGGAGAAGGCCGCGGAAGGGAC
GAGGGATATACGAACTTTTATTGTTGGGGATGGGAAGGGGGGAGGAAAGG
GAAAGTAG

Synonyms

Publications