jgi.p|Nanoce1779_2|417364, mRNA_3872 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|417364
Unique NamemRNA_3872
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1231
Alignment locationscaffold_8:278936..280166 -

Link to JBrowse

Properties
Property NameValue
TranscriptId417450
TrackFilteredModels2
ProteinId417364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:278936..280166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|417364gene_3872Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|417364mRNA_3872-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3872CDS_3872Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3872 ID=mRNA_3872|Name=jgi.p|Nanoce1779_2|417364|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp
AAAGAACAAGTATGATAGATAAGCCGGTGCTGAAGATATGGCAGCCACGA
TTTAAACTGAAAAGGATATGAAATAAAAAAGCACGATTGCACGCGAAAAA
AAGTAAATACGCAATGTGCAATCAAAGTGCGATCAAAGTGACTTATTATC
ATTCCTTCTTCTCTTCCGCCATACACCCACCATCTATACAGGAAATTCTC
AACAGCACCAACAGTGGATGTAGCAAGGAACGAGGGGAAAATGCTGCAAG
ACCACATGACCCTGGTTTTCGACCGCATGACCGAGCCAGAGCTCCGCGCC
TGGTTGGATGCCAACCCTCATAGCGTCAATGCCCGAAATATGGATGGCGA
GACCTGCCTGTTCCGTGCCGTCAATCACTGGAAGAGCGCTTCATTGGTCA
TGTGGCTTGTAGAGCGAGGGGTTAATGTAAATACCGCCGACATGTGCGGA
TACACTGCGATTCAATATGCGCGCTCAACCGAAATTCTTGATGCGCTGTT
GCTTTCTGGTGCGGACCCCACCATCCGGACGGAAAAGGGCTTCACGCTGT
TGATGGCTGAGGTCCGCTCACGTCGTTACGTGCTCGCGACTCATTTGCTG
AAGGACTCGCGCATTCGCACCCTCATCAACGCGCAAGACCAATTTGGAAA
CTCAGCATTGCACTTTGTCTGCCATGATTTGGACGATCCCGCCGTGCATC
CTCTCATTCTGCTTTTTCTCAAATATGGAGCCAGTCTGATGCTTGAGGAT
GCGCGTGGAGAGACACCCATGCGTTTACTTCAACGGCTTTACCCTACCAA
TCCCCTTACCATCACCTTGGCCGACGAGATCCTAACCGTAGAGAAGACCG
ATGCCCTCGTCATGACCGTCCGTAAAGTAATGGCGACGAAGAGTCCCGTC
GCGACTTGCTTGCAACATCGCGTGGAGTGCGGCCGACCCTTACCTATAGT
GGAAATGGCTCAGCAGTCGTGTCTCAATGACGAGAAAAGGCTTCGGGTTG
GGGTGGCGCTTTTGTCAGGCGTGGGACGAAAGGGACTGCCGAGGGATATG
TTTTGGGCAGTGCTGGATATGATTATGCCAGCATGGGACCCTTTGAGACG
TTGTATGTCACCGCAGAAGAAGCGAGTTACAATGAAAAGGGGAGGAGCAG
AAAAGCCTATGGTGGGTTAGGAGGATAGTGGCCGTATACTCAGCAATTAT
GAGGCCCTCCGTACCTCGCGGCCATCCTCGT
back to top

protein sequence of jgi.p|Nanoce1779_2|417364

>mRNA_3872-protein ID=mRNA_3872-protein|Name=jgi.p|Nanoce1779_2|417364|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MLQDHMTLVFDRMTEPELRAWLDANPHSVNARNMDGETCLFRAVNHWKSA
SLVMWLVERGVNVNTADMCGYTAIQYARSTEILDALLLSGADPTIRTEKG
FTLLMAEVRSRRYVLATHLLKDSRIRTLINAQDQFGNSALHFVCHDLDDP
AVHPLILLFLKYGASLMLEDARGETPMRLLQRLYPTNPLTITLADEILTV
EKTDALVMTVRKVMATKSPVATCLQHRVECGRPLPIVEMAQQSCLNDEKR
LRVGVALLSGVGRKGLPRDMFWAVLDMIMPAWDPLRRCMSPQKKRVTMKR
GGAEKPMVG*
back to top

mRNA from alignment at scaffold_8:278936..280166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3872 ID=mRNA_3872|Name=jgi.p|Nanoce1779_2|417364|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp|location=Sequence derived from alignment at scaffold_8:278936..280166- (Nannochloropsis oceanica)
AAAGAACAAGTATGATAGATAAGCCGGTGCTGAAGATATGGCAGCCACGA
TTTAAACTGAAAAGGATATGAAATAAAAAAGCACGATTGCACGCGAAAAA
AAGTAAATACGCAATGTGCAATCAAAGTGCGATCAAAGTGACTTATTATC
ATTCCTTCTTCTCTTCCGCCATACACCCACCATCTATACAGGAAATTCTC
AACAGCACCAACAGTGGATGTAGCAAGGAACGAGGGGAAAATGCTGCAAG
ACCACATGACCCTGGTTTTCGACCGCATGACCGAGCCAGAGCTCCGCGCC
TGGTTGGATGCCAACCCTCATAGCGTCAATGCCCGAAATATGGATGGCGA
GACCTGCCTGTTCCGTGCCGTCAATCACTGGAAGAGCGCTTCATTGGTCA
TGTGGCTTGTAGAGCGAGGGGTTAATGTAAATACCGCCGACATGTGCGGA
TACACTGCGATTCAATATGCGCGCTCAACCGAAATTCTTGATGCGCTGTT
GCTTTCTGGTGCGGACCCCACCATCCGGACGGAAAAGGGCTTCACGCTGT
TGATGGCTGAGGTCCGCTCACGTCGTTACGTGCTCGCGACTCATTTGCTG
AAGGACTCGCGCATTCGCACCCTCATCAACGCGCAAGACCAATTTGGAAA
CTCAGCATTGCACTTTGTCTGCCATGATTTGGACGATCCCGCCGTGCATC
CTCTCATTCTGCTTTTTCTCAAATATGGAGCCAGTCTGATGCTTGAGGAT
GCGCGTGGAGAGACACCCATGCGTTTACTTCAACGGCTTTACCCTACCAA
TCCCCTTACCATCACCTTGGCCGACGAGATCCTAACCGTAGAGAAGACCG
ATGCCCTCGTCATGACCGTCCGTAAAGTAATGGCGACGAAGAGTCCCGTC
GCGACTTGCTTGCAACATCGCGTGGAGTGCGGCCGACCCTTACCTATAGT
GGAAATGGCTCAGCAGTCGTGTCTCAATGACGAGAAAAGGCTTCGGGTTG
GGGTGGCGCTTTTGTCAGGCGTGGGACGAAAGGGACTGCCGAGGGATATG
TTTTGGGCAGTGCTGGATATGATTATGCCAGCATGGGACCCTTTGAGACG
TTGTATGTCACCGCAGAAGAAGCGAGTTACAATGAAAAGGGGAGGAGCAG
AAAAGCCTATGGTGGGTTAGGAGGATAGTGGCCGTATACTCAGCAATTAT
GAGGCCCTCCGTACCTCGCGGCCATCCTCGT
back to top

Coding sequence (CDS) from alignment at scaffold_8:278936..280166-

>mRNA_3872 ID=mRNA_3872|Name=jgi.p|Nanoce1779_2|417364|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_8:278936..280166- (Nannochloropsis oceanica)
ATGCTGCAAGACCACATGACCCTGGTTTTCGACCGCATGACCGAGCCAGA
GCTCCGCGCCTGGTTGGATGCCAACCCTCATAGCGTCAATGCCCGAAATA
TGGATGGCGAGACCTGCCTGTTCCGTGCCGTCAATCACTGGAAGAGCGCT
TCATTGGTCATGTGGCTTGTAGAGCGAGGGGTTAATGTAAATACCGCCGA
CATGTGCGGATACACTGCGATTCAATATGCGCGCTCAACCGAAATTCTTG
ATGCGCTGTTGCTTTCTGGTGCGGACCCCACCATCCGGACGGAAAAGGGC
TTCACGCTGTTGATGGCTGAGGTCCGCTCACGTCGTTACGTGCTCGCGAC
TCATTTGCTGAAGGACTCGCGCATTCGCACCCTCATCAACGCGCAAGACC
AATTTGGAAACTCAGCATTGCACTTTGTCTGCCATGATTTGGACGATCCC
GCCGTGCATCCTCTCATTCTGCTTTTTCTCAAATATGGAGCCAGTCTGAT
GCTTGAGGATGCGCGTGGAGAGACACCCATGCGTTTACTTCAACGGCTTT
ACCCTACCAATCCCCTTACCATCACCTTGGCCGACGAGATCCTAACCGTA
GAGAAGACCGATGCCCTCGTCATGACCGTCCGTAAAGTAATGGCGACGAA
GAGTCCCGTCGCGACTTGCTTGCAACATCGCGTGGAGTGCGGCCGACCCT
TACCTATAGTGGAAATGGCTCAGCAGTCGTGTCTCAATGACGAGAAAAGG
CTTCGGGTTGGGGTGGCGCTTTTGTCAGGCGTGGGACGAAAGGGACTGCC
GAGGGATATGTTTTGGGCAGTGCTGGATATGATTATGCCAGCATGGGACC
CTTTGAGACGTTGTATGTCACCGCAGAAGAAGCGAGTTACAATGAAAAGG
GGAGGAGCAGAAAAGCCTATGGTGGGTTAG
back to top
Synonyms
Publications