jgi.p|Nanoce1779_2|540502, mRNA_3870 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|540502
Unique NamemRNA_3870
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1153
Alignment locationscaffold_8:274648..276035 -

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Properties
Property NameValue
TranscriptId540588
TrackFilteredModels2
ProteinId540502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:274648..276035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540502gene_3870Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|540502mRNA_3870-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3870CDS_3870Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3870 ID=mRNA_3870|Name=jgi.p|Nanoce1779_2|540502|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp
CCATGAACATGCACTACACGGTGGTCGAAGTTGCTTTACGCTTGCTCAAT
CGAATGCATCCGTGATAGTTCTGCTGACTGAAAAGCTCAAAGTTATGTCG
ATCGCTGCTGCGGGAGTTCTTAGTCGCCGGCTCACCAACAGCGATGTATA
GGAATGATCATTTCTGTCGTAGCTATTCTACAATCATTCCCATTTAGCAC
CAGAGGCAAGCGGAAGAATGTTCGACGTCCACGCCCATTTGACAGCACCG
GAACTGCTGCCACATTTGGAGAGCTTATTAGCAGAGGCACACAGCGCCGG
CGTCCACGACATCCTGGTCGTCTCAGAAAACTTGCAAGATGCCGCCTTGG
TCCTCGCTTTACCTACCACTCAAGGTGGTGTACGTTTACACAAGGCCTTG
GGTCTCCATCCTGAATACGCATGCCTAGAGGCCTTGTCCGCTATGCTGAC
GCTCATCCGAACTCATCACTCTGAGCTCACGTGCATTGGCGAGATTGGCT
TGGACTATTCTCCGCACGTCCTGGGAGAGAAACACCCCGAGGCTACAAAA
ATAATACAACAGGAATGCATGCGACAGCAAGTCGTACTTGCCCTTGAGCT
CGATATGGCTGTTAATGTCCACTCTCGCTCGGCGGGCCACCATGCCTTGG
CCTTGCTCAGGGAAACTGCAGCAACAGCAATTGCAGCTGCGGCTGAAGAG
GGACCAGAAGGGCACGAACGAAGAAAAAGAGGTGCTAGAGCAGTTTTTCA
TGCGTGGGATGGAAAGGCTCATTATGCTGAAGCGGCAGCCTCGGACACCG
AGCACGACATTTACTTCTCCGTGCCTCCCTGTGCTCAACGTTGCCCCTTG
ATGTCCAAGTGGATAGCCCGTCTACCTCTTGAACGGCTGCTGCTGGAAAC
AGATTGTCCAGCACTGGCGCCTTTTAAAGGGGACGTTAATGTGCCAAAAA
ATCTTGGAGTTTCGGTTGAGGTGGTAGGGATCGCCAAAGGAATGGGAATG
GAGGAAATAGTACAGGCGACCCGGAGGAATGCGGAGCGATTGTTTGGCTT
AGGTTTTGCGACAGGGATGGACAGAGGGTACAAAAAGTATGAGACAACTG
GATAAGAGGAGAAGTAAAGTAAACATCTATTGTATTCGTGCGATTTAATT
TTT
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protein sequence of jgi.p|Nanoce1779_2|540502

>mRNA_3870-protein ID=mRNA_3870-protein|Name=jgi.p|Nanoce1779_2|540502|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MFDVHAHLTAPELLPHLESLLAEAHSAGVHDILVVSENLQDAALVLALPT
TQGGVRLHKALGLHPEYACLEALSAMLTLIRTHHSELTCIGEIGLDYSPH
VLGEKHPEATKIIQQECMRQQVVLALELDMAVNVHSRSAGHHALALLRET
AATAIAAAAEEGPEGHERRKRGARAVFHAWDGKAHYAEAAASDTEHDIYF
SVPPCAQRCPLMSKWIARLPLERLLLETDCPALAPFKGDVNVPKNLGVSV
EVVGIAKGMGMEEIVQATRRNAERLFGLGFATGMDRGYKKYETTG*
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mRNA from alignment at scaffold_8:274648..276035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3870 ID=mRNA_3870|Name=jgi.p|Nanoce1779_2|540502|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_8:274648..276035- (Nannochloropsis oceanica)
CCATGAACATGCACTACACGGTGGTCGAAGTTGCTTTACGCTTGCTCAAT
CGAATGCATCCGTGATAGTTCTGCTGACTGAAAAGCTCAAAGTTATGTCG
ATCGCTGCTGCGGGAGTTCTTAGTCGCCGGCTCACCAACAGCGATGTATA
GGAATGATCATTTCTGTCGTAGCTATTCTACAATCATTCCCATTTAGCAC
CAGAGGCAAGCGGAAGAATGTTCGACGTCCACGCCCATTTGACAGCACCG
GAACTGCTGCCACATTTGGAGAGCTTATTAGCAGAGGCACACAGGTAAGC
ACGCTTGCCTCCCACCCTACACCCTCTCCACTCCACCATTATCGCTCCAA
TATAATGCCCCAAATGGAAAGTAAAGTGTAACAGGCTTTAGAGATGTCTA
TGAAAGAGTCAGTCAGTGATTTTGAGCAGATAAAACACGGATTTGAAATT
TAGCGCCATCCATGCTGTGCGACCCGCCCGAATTCGACACTCACACTCTC
GCCAATGCTCTCCCCATCCATCCTAATAGCGCCGGCGTCCACGACATCCT
GGTCGTCTCAGAAAACTTGCAAGATGCCGCCTTGGTCCTCGCTTTACCTA
CCACTCAAGGTGGTGTACGTTTACACAAGGCCTTGGGTCTCCATCCTGAA
TACGCATGCCTAGAGGCCTTGTCCGCTATGCTGACGCTCATCCGAACTCA
TCACTCTGAGCTCACGTGCATTGGCGAGATTGGCTTGGACTATTCTCCGC
ACGTCCTGGGAGAGAAACACCCCGAGGCTACAAAAATAATACAACAGGAA
TGCATGCGACAGCAAGTCGTACTTGCCCTTGAGCTCGATATGGCTGTTAA
TGTCCACTCTCGCTCGGCGGGCCACCATGCCTTGGCCTTGCTCAGGGAAA
CTGCAGCAACAGCAATTGCAGCTGCGGCTGAAGAGGGACCAGAAGGGCAC
GAACGAAGAAAAAGAGGTGCTAGAGCAGTTTTTCATGCGTGGGATGGAAA
GGCTCATTATGCTGAAGCGGCAGCCTCGGACACCGAGCACGACATTTACT
TCTCCGTGCCTCCCTGTGCTCAACGTTGCCCCTTGATGTCCAAGTGGATA
GCCCGTCTACCTCTTGAACGGCTGCTGCTGGAAACAGATTGTCCAGCACT
GGCGCCTTTTAAAGGGGACGTTAATGTGCCAAAAAATCTTGGAGTTTCGG
TTGAGGTGGTAGGGATCGCCAAAGGAATGGGAATGGAGGAAATAGTACAG
GCGACCCGGAGGAATGCGGAGCGATTGTTTGGCTTAGGTTTTGCGACAGG
GATGGACAGAGGGTACAAAAAGTATGAGACAACTGGATAAGAGGAGAAGT
AAAGTAAACATCTATTGTATTCGTGCGATTTAATTTTT
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Coding sequence (CDS) from alignment at scaffold_8:274648..276035-

>mRNA_3870 ID=mRNA_3870|Name=jgi.p|Nanoce1779_2|540502|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_8:274648..276035- (Nannochloropsis oceanica)
CGCCGGCGTCCACGACATCCTGGTCGTCTCAGAAAACTTGCAAGATGCCG
CCTTGGTCCTCGCTTTACCTACCACTCAAGGTGGTGTACGTTTACACAAG
GCCTTGGGTCTCCATCCTGAATACGCATGCCTAGAGGCCTTGTCCGCTAT
GCTGACGCTCATCCGAACTCATCACTCTGAGCTCACGTGCATTGGCGAGA
TTGGCTTGGACTATTCTCCGCACGTCCTGGGAGAGAAACACCCCGAGGCT
ACAAAAATAATACAACAGGAATGCATGCGACAGCAAGTCGTACTTGCCCT
TGAGCTCGATATGGCTGTTAATGTCCACTCTCGCTCGGCGGGCCACCATG
CCTTGGCCTTGCTCAGGGAAACTGCAGCAACAGCAATTGCAGCTGCGGCT
GAAGAGGGACCAGAAGGGCACGAACGAAGAAAAAGAGGTGCTAGAGCAGT
TTTTCATGCGTGGGATGGAAAGGCTCATTATGCTGAAGCGGCAGCCTCGG
ACACCGAGCACGACATTTACTTCTCCGTGCCTCCCTGTGCTCAACGTTGC
CCCTTGATGTCCAAGTGGATAGCCCGTCTACCTCTTGAACGGCTGCTGCT
GGAAACAGATTGTCCAGCACTGGCGCCTTTTAAAGGGGACGTTAATGTGC
CAAAAAATCTTGGAGTTTCGGTTGAGGTGGTAGGGATCGCCAAAGGAATG
GGAATGGAGGAAATAGTACAGGCGACCCGGAGGAATGCGGAGCGATTGTT
TGGCTTAGGTTTTGCGACAGGGATGGACAGAGGGTACAAAAAGTATGAGA
CAACTGGATAAATGTTCGACGTCCACGCCCATTTGACAGCACCGGAACTG
CTGCCACATTTGGAGAGCTTATTAGCAGAGGCACACAGCGCCGGCGTCCA
CGACATCCTGGTCGTCTCAGAAAACTTGCAAGATGCCGCCTTGGTCCTCG
CTTTACCTACCACTCAAGGTGGTGTACGTTTACACAAGGCCTTGGGTCTC
CATCCTGAATACGCATGCCTAGAGGCCTTGTCCGCTATGCTGACGCTCAT
CCGAACTCATCACTCTGAGCTCACGTGCATTGGCGAGATTGGCTTGGACT
ATTCTCCGCACGTCCTGGGAGAGAAACACCCCGAGGCTACAAAAATAATA
CAACAGGAATGCATGCGACAGCAAGTCGTACTTGCCCTTGAGCTCGATAT
GGCTGTTAATGTCCACTCTCGCTCGGCGGGCCACCATGCCTTGGCCTTGC
TCAGGGAAACTGCAGCAACAGCAATTGCAGCTGCGGCTGAAGAGGGACCA
GAAGGGCACGAACGAAGAAAAAGAGGTGCTAGAGCAGTTTTTCATGCGTG
GGATGGAAAGGCTCATTATGCTGAAGCGGCAGCCTCGGACACCGAGCACG
ACATTTACTTCTCCGTGCCTCCCTGTGCTCAACGTTGCCCCTTGATGTCC
AAGTGGATAGCCCGTCTACCTCTTGAACGGCTGCTGCTGGAAACAGATTG
TCCAGCACTGGCGCCTTTTAAAGGGGACGTTAATGTGCCAAAAAATCTTG
GAGTTTCGGTTGAGGTGGTAGGGATCGCCAAAGGAATGGGAATGGAGGAA
ATAGTACAGGCGACCCGGAGGAATGCGGAGCGATTGTTTGGCTTAGGTTT
TGCGACAGGGATGGACAGAGGGTACAAAAAGTATGAGACAACTGGATAAA
TGTTCGACGTCCACGCCCATTTGACAGCACCGGAACTGCTGCCACATTTG
GAGAGCTTATTAGCAGAGGCACACAG
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Synonyms
Publications