jgi.p|Nanoce1779_2|577178, mRNA_387 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577178
Unique Name	mRNA_387
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3026
Alignment location	scaffold_3:965139..968164 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577264
Track	FilteredModels2
ProteinId	577178

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:965139..968164 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577178	gene_387	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577178	mRNA_387-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_387	CDS_387	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:965139..968164-
coding sequence from alignment at scaffold_3:965139..968164-

mRNA sequence

>mRNA_387 ID=mRNA_387|Name=jgi.p|Nanoce1779_2|577178|organism=Nannochloropsis oceanica|type=mRNA|length=3026bp
ACAGCTGCTCACACCAGCGCATACGCCCGACACTGTCAGTACCGCCGCTT
ATTCACAACCAACAACCGTGGCCCCGTATTATCCCCTTTTCCCTCAACTT
GGCTCTTCCACCACCACGTCCTCGTTAATATTAGCGCCATGAATCCCGAG
ACGTGCACCAAGTGCAGGAGCCTCGACATAATCACAGGTTCGTTTTCTTT
GTCTCGTCATCTTGCGTCCTTGAGTTGCGGTCAGAAACCCGTTTCCCCCC
TCGAGTTCCCTCAATTCCCACCCTTCCAACCAGGGATAAGATAGACAGCA
CAACAACCCACCCAGACGCGGAAACAATAACTTCGGTGCGCTTCTTCTTG
GACGGTGTAGGTGTGTGACGCAGGCTATGGGAAGAGAAAGATGAGTAGGG
GGGAAAGGCGATCCATTCGTCGTAGCCGCCCTACCTCTCTCCCTAGGCCT
CTCCCTCGCAAGCCTGCCGACCGACTCCCACTCCTCCAAAGAGAGACGCA
ATCGAAAAAAATACCCCCACTCCCCCCGGCCTAGCCCGTCCCTCTCTCCC
TCTCTCGCGCAAGCGAGCGGCGGGAGCCGTGAAGACCACCAACAGATACA
AAAGAGAAGCAAACTTCCCTCTCCCTCGTTCTCCTCCCCCTCAAACGTAA
CCCGTCAAATTGATACGATCAATCTAACCTTATTCCCTGTGTGGCATATT
TACATCCCAACGTAACCCTTTTTCGCTCTCCGGCGTCATGCGAGAACGGC
ATGCGCTGACCATCCCACCCCAGTTCCTGTGTTGGTGCCCCTGTCGGTGC
TGCTGCTCCCCTTCCTTCTGCATGCCTTGTTGTCGAGCCCAGTGCTCATT
TTCGGAACGGGTGACCAAGCGGCTTGCAGCCCACCTTTCCTTCCACCATC
CCACGTGATACTCAGGGGTTCAGGGCGTATTGTAATGTTATTGTTATGGT
CGTTGCAGGCGAACATTCATGTGTGTCTGTACCTCTTGCTACAAGCCCAG
CCTCTTATTTGAGCAATTCAGCAGGGACCACAAATTGTACTACAGCCGGA
AGTGTTTCCAGCAACTTTCAAAATTGATCATTTGCGGGTCATTCATGTGA
AGTTCGTGACTTAACCTCGGGTCTGCAATGACGAGCAAGTTTTGTCTTGT
CTCTGTTAGCAGCCTTTCTCTCGTCCTGGACGTCGTGGTGGTTGTCGTCG
CTGCGAGAGGCTTCGTTTCAAGCGATGTGACCGGCCAGCCACCCCTTCAC
TTTGCTTGTATGTAGTAAATATACGTTTGTGGGAGTTCATTGTACGGTAG
CCAAGAAGCTAGGTTCTTGGATGGAATTTGTCGTTATTGGAGCTGACCTT
TGCAGCGACGCGACGGGGATGCAGCGAGATGAGACTGAAGTTTTATTTTG
GCTTGAATGAGGCGAAGAAATCAGCTCTTGTCGACACTTTCCGCCCGCTT
GCTCCACTCGTTGGAAGATGGAGCCTCTTGTCTTGGAACAAGGGAGGGCC
TTTATCCTTTTTGTGTCGCCGTGGTTGCGGTAGTTAACGGTGTGTGCTTT
TAGATCGTGATTGTTGGCGAGACGACAGCACACTCTGCCAGTACCGTCAT
CCTCTCGCGCATGCCCCAGCTCCTGTGCTGCTGCTGCCGCAGAGCAAGGC
CTTCGATTACACCGCCGACAATTACCGCCGCCACCACTATGAAGCGAGGG
AGTCTTATAATATATTGCCAGTCTAGATGCCTTCCTTCCTCGCCCCTTTT
CCTCTTTTCCACCCGCCCTCGCTTTCAACCCCTCCACTCACCATATCCTC
GATCCCTCCCTCCTCTTTCTTCTTCCTTCAAATCAAAACAGATCACCGGT
CCGGCGACGTGATCTGCCGCGGCTGTGGAGAAGTCCAAGCTGAGCGCCTT
GTGGACGAAGGAGCCGAGTGGAACCGCTATGATGACAATGATGGAAAAGG
AGACCCTTCCCGGGTGGGGGGTGAGCTGGGAGGAACGGCCTCTCGTATAT
GGGGGGGCTCATCGGCAAGTATGCCAGGGGCAGGACGAGGGGGAGGAAGC
GGGGGAGGGAGCAGTAAGAAAAGGAAGGCGCAGCAAGGGGCGGCCGCTTT
GACGGGGGCAGATCTAGCAAATAAGAAAAGTCGGGCACAGGGGAAATTGG
AGAAGGTGTGTATGCTCTTATCGGACTCGTGCCGGTCGTTGCACTTGGAC
GAGAGGGTCGCTCAGGTTGGTTTTACAATCGCCGACAGCGCAAGCACGGA
GGGGGTCTTTAAGGGAAAGGCTGAAAGTGTATTGGTTGCGGCCGTATTAT
ACTTGGCGTGCAAGCACTGTGGGGTCCTCAAGAGCATTGCCGAGGTCTGC
TCGGAGTTGGGGACGAACAAATTTGAGGTAGGGCGAGTGATCAACGATAT
CTCCCGGAAGGTCAAGGCATTGGAAGCCGTCGTTTTCTCTCCCGAGGAAG
TAGTGGATAAATATGGGGGCCAGTTGCGGCTCCCGTTGGGTTTGCGCGCG
GCGGCGGTCGATGTAATGAAAACTGCGAGGGAATTGGAGGGGTTTCAGGG
CATGCACCCGCAAACGCTTGCGGGGGCGGCCTTGTTGTTGTTGAGCAACA
CGAAAAAGATGCCGCAGTTGGTGGTGGCAGATGGAGTCGTAAAGAAGGAA
GAAGGGATAAAAAGCGGGGGGCAGAGGGAGGCGTTGGCCGGGACTGTTTT
CCCACCTCCTGCGCGGTCGGTGGGGGAGGTGACGGGTGCAACGCTTGTGG
GGGTAGGGACGATGAAGAAAGCGCATGCCCTTTTGTATGAGCATCGAGAG
AGGGTTGTTCCGTTGGTGTACGCGGCGGAGATGGCGAGTCATTTACTGGA
GTTGAGTCCTCCGACGGAGTTGGATTCGTAGAAAGCGAGGGAGCGAAAGA
GGTGCAGGATGTACAAAATCAAAAGGAACAGAGAAAGGAGCGAGCCGTGT
GTGTACAACTAACAAACGAAACATCGAACAAATAGACAGCGAGAAACTCA
AAGCATTTGCTGTAACGGGCTTGTGG

protein sequence of jgi.p|Nanoce1779_2|577178

>mRNA_387-protein ID=mRNA_387-protein|Name=jgi.p|Nanoce1779_2|577178|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MPSFLAPFPLFHPPSLSTPPLTISSIPPSSFFFLQIKTDHRSGDVICRGC
GEVQAERLVDEGAEWNRYDDNDGKGDPSRVGGELGGTASRIWGGSSASMP
GAGRGGGSGGGSSKKRKAQQGAAALTGADLANKKSRAQGKLEKVCMLLSD
SCRSLHLDERVAQVGFTIADSASTEGVFKGKAESVLVAAVLYLACKHCGV
LKSIAEVCSELGTNKFEVGRVINDISRKVKALEAVVFSPEEVVDKYGGQL
RLPLGLRAAAVDVMKTARELEGFQGMHPQTLAGAALLLLSNTKKMPQLVV
ADGVVKKEEGIKSGGQREALAGTVFPPPARSVGEVTGATLVGVGTMKKAH
ALLYEHRERVVPLVYAAEMASHLLELSPPTELDS*

mRNA from alignment at scaffold_3:965139..968164-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_387 ID=mRNA_387|Name=jgi.p|Nanoce1779_2|577178|organism=Nannochloropsis oceanica|type=mRNA|length=3026bp|location=Sequence derived from alignment at scaffold_3:965139..968164- (Nannochloropsis oceanica)
ACAGCTGCTCACACCAGCGCATACGCCCGACACTGTCAGTACCGCCGCTT
ATTCACAACCAACAACCGTGGCCCCGTATTATCCCCTTTTCCCTCAACTT
GGCTCTTCCACCACCACGTCCTCGTTAATATTAGCGCCATGAATCCCGAG
ACGTGCACCAAGTGCAGGAGCCTCGACATAATCACAGGTTCGTTTTCTTT
GTCTCGTCATCTTGCGTCCTTGAGTTGCGGTCAGAAACCCGTTTCCCCCC
TCGAGTTCCCTCAATTCCCACCCTTCCAACCAGGGATAAGATAGACAGCA
CAACAACCCACCCAGACGCGGAAACAATAACTTCGGTGCGCTTCTTCTTG
GACGGTGTAGGTGTGTGACGCAGGCTATGGGAAGAGAAAGATGAGTAGGG
GGGAAAGGCGATCCATTCGTCGTAGCCGCCCTACCTCTCTCCCTAGGCCT
CTCCCTCGCAAGCCTGCCGACCGACTCCCACTCCTCCAAAGAGAGACGCA
ATCGAAAAAAATACCCCCACTCCCCCCGGCCTAGCCCGTCCCTCTCTCCC
TCTCTCGCGCAAGCGAGCGGCGGGAGCCGTGAAGACCACCAACAGATACA
AAAGAGAAGCAAACTTCCCTCTCCCTCGTTCTCCTCCCCCTCAAACGTAA
CCCGTCAAATTGATACGATCAATCTAACCTTATTCCCTGTGTGGCATATT
TACATCCCAACGTAACCCTTTTTCGCTCTCCGGCGTCATGCGAGAACGGC
ATGCGCTGACCATCCCACCCCAGTTCCTGTGTTGGTGCCCCTGTCGGTGC
TGCTGCTCCCCTTCCTTCTGCATGCCTTGTTGTCGAGCCCAGTGCTCATT
TTCGGAACGGGTGACCAAGCGGCTTGCAGCCCACCTTTCCTTCCACCATC
CCACGTGATACTCAGGGGTTCAGGGCGTATTGTAATGTTATTGTTATGGT
CGTTGCAGGCGAACATTCATGTGTGTCTGTACCTCTTGCTACAAGCCCAG
CCTCTTATTTGAGCAATTCAGCAGGGACCACAAATTGTACTACAGCCGGA
AGTGTTTCCAGCAACTTTCAAAATTGATCATTTGCGGGTCATTCATGTGA
AGTTCGTGACTTAACCTCGGGTCTGCAATGACGAGCAAGTTTTGTCTTGT
CTCTGTTAGCAGCCTTTCTCTCGTCCTGGACGTCGTGGTGGTTGTCGTCG
CTGCGAGAGGCTTCGTTTCAAGCGATGTGACCGGCCAGCCACCCCTTCAC
TTTGCTTGTATGTAGTAAATATACGTTTGTGGGAGTTCATTGTACGGTAG
CCAAGAAGCTAGGTTCTTGGATGGAATTTGTCGTTATTGGAGCTGACCTT
TGCAGCGACGCGACGGGGATGCAGCGAGATGAGACTGAAGTTTTATTTTG
GCTTGAATGAGGCGAAGAAATCAGCTCTTGTCGACACTTTCCGCCCGCTT
GCTCCACTCGTTGGAAGATGGAGCCTCTTGTCTTGGAACAAGGGAGGGCC
TTTATCCTTTTTGTGTCGCCGTGGTTGCGGTAGTTAACGGTGTGTGCTTT
TAGATCGTGATTGTTGGCGAGACGACAGCACACTCTGCCAGTACCGTCAT
CCTCTCGCGCATGCCCCAGCTCCTGTGCTGCTGCTGCCGCAGAGCAAGGC
CTTCGATTACACCGCCGACAATTACCGCCGCCACCACTATGAAGCGAGGG
AGTCTTATAATATATTGCCAGTCTAGATGCCTTCCTTCCTCGCCCCTTTT
CCTCTTTTCCACCCGCCCTCGCTTTCAACCCCTCCACTCACCATATCCTC
GATCCCTCCCTCCTCTTTCTTCTTCCTTCAAATCAAAACAGATCACCGGT
CCGGCGACGTGATCTGCCGCGGCTGTGGAGAAGTCCAAGCTGAGCGCCTT
GTGGACGAAGGAGCCGAGTGGAACCGCTATGATGACAATGATGGAAAAGG
AGACCCTTCCCGGGTGGGGGGTGAGCTGGGAGGAACGGCCTCTCGTATAT
GGGGGGGCTCATCGGCAAGTATGCCAGGGGCAGGACGAGGGGGAGGAAGC
GGGGGAGGGAGCAGTAAGAAAAGGAAGGCGCAGCAAGGGGCGGCCGCTTT
GACGGGGGCAGATCTAGCAAATAAGAAAAGTCGGGCACAGGGGAAATTGG
AGAAGGTGTGTATGCTCTTATCGGACTCGTGCCGGTCGTTGCACTTGGAC
GAGAGGGTCGCTCAGGTTGGTTTTACAATCGCCGACAGCGCAAGCACGGA
GGGGGTCTTTAAGGGAAAGGCTGAAAGTGTATTGGTTGCGGCCGTATTAT
ACTTGGCGTGCAAGCACTGTGGGGTCCTCAAGAGCATTGCCGAGGTCTGC
TCGGAGTTGGGGACGAACAAATTTGAGGTAGGGCGAGTGATCAACGATAT
CTCCCGGAAGGTCAAGGCATTGGAAGCCGTCGTTTTCTCTCCCGAGGAAG
TAGTGGATAAATATGGGGGCCAGTTGCGGCTCCCGTTGGGTTTGCGCGCG
GCGGCGGTCGATGTAATGAAAACTGCGAGGGAATTGGAGGGGTTTCAGGG
CATGCACCCGCAAACGCTTGCGGGGGCGGCCTTGTTGTTGTTGAGCAACA
CGAAAAAGATGCCGCAGTTGGTGGTGGCAGATGGAGTCGTAAAGAAGGAA
GAAGGGATAAAAAGCGGGGGGCAGAGGGAGGCGTTGGCCGGGACTGTTTT
CCCACCTCCTGCGCGGTCGGTGGGGGAGGTGACGGGTGCAACGCTTGTGG
GGGTAGGGACGATGAAGAAAGCGCATGCCCTTTTGTATGAGCATCGAGAG
AGGGTTGTTCCGTTGGTGTACGCGGCGGAGATGGCGAGTCATTTACTGGA
GTTGAGTCCTCCGACGGAGTTGGATTCGTAGAAAGCGAGGGAGCGAAAGA
GGTGCAGGATGTACAAAATCAAAAGGAACAGAGAAAGGAGCGAGCCGTGT
GTGTACAACTAACAAACGAAACATCGAACAAATAGACAGCGAGAAACTCA
AAGCATTTGCTGTAACGGGCTTGTGG

Coding sequence (CDS) from alignment at scaffold_3:965139..968164-

>mRNA_387 ID=mRNA_387|Name=jgi.p|Nanoce1779_2|577178|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_3:965139..968164- (Nannochloropsis oceanica)
ATGCCTTCCTTCCTCGCCCCTTTTCCTCTTTTCCACCCGCCCTCGCTTTC
AACCCCTCCACTCACCATATCCTCGATCCCTCCCTCCTCTTTCTTCTTCC
TTCAAATCAAAACAGATCACCGGTCCGGCGACGTGATCTGCCGCGGCTGT
GGAGAAGTCCAAGCTGAGCGCCTTGTGGACGAAGGAGCCGAGTGGAACCG
CTATGATGACAATGATGGAAAAGGAGACCCTTCCCGGGTGGGGGGTGAGC
TGGGAGGAACGGCCTCTCGTATATGGGGGGGCTCATCGGCAAGTATGCCA
GGGGCAGGACGAGGGGGAGGAAGCGGGGGAGGGAGCAGTAAGAAAAGGAA
GGCGCAGCAAGGGGCGGCCGCTTTGACGGGGGCAGATCTAGCAAATAAGA
AAAGTCGGGCACAGGGGAAATTGGAGAAGGTGTGTATGCTCTTATCGGAC
TCGTGCCGGTCGTTGCACTTGGACGAGAGGGTCGCTCAGGTTGGTTTTAC
AATCGCCGACAGCGCAAGCACGGAGGGGGTCTTTAAGGGAAAGGCTGAAA
GTGTATTGGTTGCGGCCGTATTATACTTGGCGTGCAAGCACTGTGGGGTC
CTCAAGAGCATTGCCGAGGTCTGCTCGGAGTTGGGGACGAACAAATTTGA
GGTAGGGCGAGTGATCAACGATATCTCCCGGAAGGTCAAGGCATTGGAAG
CCGTCGTTTTCTCTCCCGAGGAAGTAGTGGATAAATATGGGGGCCAGTTG
CGGCTCCCGTTGGGTTTGCGCGCGGCGGCGGTCGATGTAATGAAAACTGC
GAGGGAATTGGAGGGGTTTCAGGGCATGCACCCGCAAACGCTTGCGGGGG
CGGCCTTGTTGTTGTTGAGCAACACGAAAAAGATGCCGCAGTTGGTGGTG
GCAGATGGAGTCGTAAAGAAGGAAGAAGGGATAAAAAGCGGGGGGCAGAG
GGAGGCGTTGGCCGGGACTGTTTTCCCACCTCCTGCGCGGTCGGTGGGGG
AGGTGACGGGTGCAACGCTTGTGGGGGTAGGGACGATGAAGAAAGCGCAT
GCCCTTTTGTATGAGCATCGAGAGAGGGTTGTTCCGTTGGTGTACGCGGC
GGAGATGGCGAGTCATTTACTGGAGTTGAGTCCTCCGACGGAGTTGGATT
CGTAG

Synonyms

Publications