jgi.p|Nanoce1779_2|585676, mRNA_3869 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585676
Unique Name	mRNA_3869
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2407
Alignment location	scaffold_8:269864..272270 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585762
Track	FilteredModels2
ProteinId	585676

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:269864..272270 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585676	gene_3869	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585676	mRNA_3869-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3869	CDS_3869	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:269864..272270-
coding sequence from alignment at scaffold_8:269864..272270-

mRNA sequence

>mRNA_3869 ID=mRNA_3869|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp
AAAATCGCGGAAGAGGAGAGAGAGGGAGGGAGGGAAGGAGGGATTGTGGC
AATGGAAGGGATGGAGGGAAGGGTGGGCATTTAAAAGGTGGCGAATTTGG
GTGCATCGGCATCGGAAGAAGAGGCAACAGCGAGCACTGACAGAAGCAGA
GGAACGTCGGTTGAAGCTCTTGCAGTCTGCTTATCCTACATGGCATATCA
GTGGTGGGAACAGCAACGGCCGGAGCTGCACCGCTTTATTCGAAGGGAGA
AGAGACAGGGGGGAGATAGGGGAGGGAGGAAGGCGTCATTTCCCTACACC
TCGCCCTTGGAATGGTGATGGTGCGGGGTGGAATGCGTATGGGACGGGAG
GGAGGGGCCATCTTGCACTTTCTGGTGGGAATAAAAACAGAAGTAGCAGT
AGTCACAGCTATAGAGCCTTTTTATCTGTTTCTGCTGCCTCAGTCTCACC
ACCGGCCTCGACTAGGGAACGGACCTTATTATCCTCATCCTCCCTACCGA
CAGCAACTCCCTCCTCCTTCGATTCCTCGTCCTCCTTCTCTCGGTCATTG
CCCATACTCCCTCCCTCCCAACGAGGGTCCCTACGCCCTCCTCCTCGCCG
GCCGTTGGAGGTGGTGTTGGAGGCTCAAGGAGTGCAAGTCCCTGCTTGGA
TTCTGCGAGAGATGCATTCCCATGTGGTCAACGAAAAACAGGAGGTCAAA
GAGGTGGAGAGCGTGGCGATGGCGAGAGAAAGCGGCAGAATGACGTCAAC
AGCTGAAGTAGTGGAGTCAACAGCTGCTCCTGCTGCTGCTGCGCTTGCTG
GTGGGAGGCAAGCGATGGTGGCTTCTTTAGCCACAGAGACAGTAGAGGAA
AAGGAGGGAAAGTGGTTGAATGGCGCAGGGAGGGTAACACGTGGGAGGGA
GGGAGGAGCGTCTCTAATTAGCAGTAGCAGCCGCTCACCGGGAACAGGCA
TGTTGCCTTCCTTCTTTACGCCTTCATTCTCTTCCTCTTTCTCGCCACCC
ACAAGCCCCCACGGGTTATCGGCCCATGCGTCACCTTTGGCCTCTTCTTC
CTCTTTCAATCGATCGTCCTTCCCAGGGCTTACGGATATCACTACTTATG
CTACATCTACTGCTGCTCCTGCTACTGGTACCGATGTGTGTGGGAGTTAT
TACAACGCAGGCACACGCCGAGCGCCCCCTAGAAGAGGAAGAGATGAAGA
CCGAGAAGGCTCTGGAGAAAGAGGAGGGAGAATGAAAGAAATGGAAATGA
GAAAAGAGGAGGGAGATGAAGGCAAGCACAAACACGAGAAGGAAGTCGAC
CTCGGCAATGACGACGGTATAGACGGGCAGCAGCAAAAAGAGGACAAGGA
CGTGGAAGAGAGGGAAGAGGAGGAGCAGAATGTTTTAAAGGAGGAGGGGG
TTGTAGAAGAGAAGGAGGAGGAGGAAGATTTGGGGATTTTGGAGGCGCGA
TTGCGGGGGTGGATGATGGAGCGTGAACGATTTGAGCAAGCGCGTGTGGA
AGTAGAGGAACTTGAAGCCATTCAACAACAACGACGACACCACCCAGGGC
AGCAGAAGAAGGAGCAGGCGTCGACCGAATCCTCTTCTCTTTCGTTATCC
ACCTCACAGGCGTCTTCTGCATTGTCGCAAGCAACGCCGTCCAGCCCAAA
CAGGAGCAGCAGCAGCAGCACGAGTGTAGGGAGTTTGAGGAGGCGTCAGC
AGGAGGAGCGGCTGCAGGAATTGCGAGAAGTCTTGCGAGAGTATGAAGAG
TGGCAAGAACGGACATTACCTTTAATTAGGGGGGTGCACAGGAAAATCGG
ACAGCTGAAGCTGCGTGTGTCAGGAGCGAGGCTGACGACAACAACGACTG
CTTCTATCTGAAAGATGGGATGTAGTAATTCATGACAGGGGCGTGGGTTG
GAGGAGGGGAAGGAAAATATATAGCTTGGAGCGGCGTTATATCGCCGAGT
AAGAGGACAGTAACAGCACCAGGGGCAAGAGGGGAAGGAGGAGGAGAAGG
AAAGGATTTGGAATTGGGACGTGATGATTGTGTAAATGTGATGTTTGTGG
AAATGTATGCATCTGGAGAAGCAAACGACTACTTTGCGTATCTATTCTTA
TGTAATTGAAGGGTGAAAAGCACGCGAATAAACACTTATGCATGTACCAA
ACTTGAATGAAAAGAAAAAGTAAAATAAATGCCCTCTCTTTGAACTGATG
TCAGCAAGTTCTACACGCTGTGAGTGGCGGAAATTTTCATCGCCGAGGGG
GGAAAACAAATAAATAGCGACTGGCACTTTGGCTCGACTGAGGGTCGTTC
CTTGATGATTCGTCAAACATTCTACACGACGAGCTTCTCAGTATTCGAAT
ATTGGGCTAAACGCAGCAAGCCGGAGAAAGCAAAGCAGATAAAGCAATAA
ACGGGTG

protein sequence of jgi.p|Nanoce1779_2|585676

>mRNA_3869-protein ID=mRNA_3869-protein|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MHSHVVNEKQEVKEVESVAMARESGRMTSTAEVVESTAAPAAAALAGGRQ
AMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSSRSPGTGMLPS
FFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGLTDITTYATST
AAPATGTDVCGSYYNAGTRRAPPRRGRDEDREGSGERGGRMKEMEMRKEE
GDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQNVLKEEGVVEE
KEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQRRHHPGQQKK
EQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVGSLRRRQQEER
LQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGARLTTTTTASI*

mRNA from alignment at scaffold_8:269864..272270-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3869 ID=mRNA_3869|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at scaffold_8:269864..272270- (Nannochloropsis oceanica)
AAAATCGCGGAAGAGGAGAGAGAGGGAGGGAGGGAAGGAGGGATTGTGGC
AATGGAAGGGATGGAGGGAAGGGTGGGCATTTAAAAGGTGGCGAATTTGG
GTGCATCGGCATCGGAAGAAGAGGCAACAGCGAGCACTGACAGAAGCAGA
GGAACGTCGGTTGAAGCTCTTGCAGTCTGCTTATCCTACATGGCATATCA
GTGGTGGGAACAGCAACGGCCGGAGCTGCACCGCTTTATTCGAAGGGAGA
AGAGACAGGGGGGAGATAGGGGAGGGAGGAAGGCGTCATTTCCCTACACC
TCGCCCTTGGAATGGTGATGGTGCGGGGTGGAATGCGTATGGGACGGGAG
GGAGGGGCCATCTTGCACTTTCTGGTGGGAATAAAAACAGAAGTAGCAGT
AGTCACAGCTATAGAGCCTTTTTATCTGTTTCTGCTGCCTCAGTCTCACC
ACCGGCCTCGACTAGGGAACGGACCTTATTATCCTCATCCTCCCTACCGA
CAGCAACTCCCTCCTCCTTCGATTCCTCGTCCTCCTTCTCTCGGTCATTG
CCCATACTCCCTCCCTCCCAACGAGGGTCCCTACGCCCTCCTCCTCGCCG
GCCGTTGGAGGTGGTGTTGGAGGCTCAAGGAGTGCAAGTCCCTGCTTGGA
TTCTGCGAGAGATGCATTCCCATGTGGTCAACGAAAAACAGGAGGTCAAA
GAGGTGGAGAGCGTGGCGATGGCGAGAGAAAGCGGCAGAATGACGTCAAC
AGCTGAAGTAGTGGAGTCAACAGCTGCTCCTGCTGCTGCTGCGCTTGCTG
GTGGGAGGCAAGCGATGGTGGCTTCTTTAGCCACAGAGACAGTAGAGGAA
AAGGAGGGAAAGTGGTTGAATGGCGCAGGGAGGGTAACACGTGGGAGGGA
GGGAGGAGCGTCTCTAATTAGCAGTAGCAGCCGCTCACCGGGAACAGGCA
TGTTGCCTTCCTTCTTTACGCCTTCATTCTCTTCCTCTTTCTCGCCACCC
ACAAGCCCCCACGGGTTATCGGCCCATGCGTCACCTTTGGCCTCTTCTTC
CTCTTTCAATCGATCGTCCTTCCCAGGGCTTACGGATATCACTACTTATG
CTACATCTACTGCTGCTCCTGCTACTGGTACCGATGTGTGTGGGAGTTAT
TACAACGCAGGCACACGCCGAGCGCCCCCTAGAAGAGGAAGAGATGAAGA
CCGAGAAGGCTCTGGAGAAAGAGGAGGGAGAATGAAAGAAATGGAAATGA
GAAAAGAGGAGGGAGATGAAGGCAAGCACAAACACGAGAAGGAAGTCGAC
CTCGGCAATGACGACGGTATAGACGGGCAGCAGCAAAAAGAGGACAAGGA
CGTGGAAGAGAGGGAAGAGGAGGAGCAGAATGTTTTAAAGGAGGAGGGGG
TTGTAGAAGAGAAGGAGGAGGAGGAAGATTTGGGGATTTTGGAGGCGCGA
TTGCGGGGGTGGATGATGGAGCGTGAACGATTTGAGCAAGCGCGTGTGGA
AGTAGAGGAACTTGAAGCCATTCAACAACAACGACGACACCACCCAGGGC
AGCAGAAGAAGGAGCAGGCGTCGACCGAATCCTCTTCTCTTTCGTTATCC
ACCTCACAGGCGTCTTCTGCATTGTCGCAAGCAACGCCGTCCAGCCCAAA
CAGGAGCAGCAGCAGCAGCACGAGTGTAGGGAGTTTGAGGAGGCGTCAGC
AGGAGGAGCGGCTGCAGGAATTGCGAGAAGTCTTGCGAGAGTATGAAGAG
TGGCAAGAACGGACATTACCTTTAATTAGGGGGGTGCACAGGAAAATCGG
ACAGCTGAAGCTGCGTGTGTCAGGAGCGAGGCTGACGACAACAACGACTG
CTTCTATCTGAAAGATGGGATGTAGTAATTCATGACAGGGGCGTGGGTTG
GAGGAGGGGAAGGAAAATATATAGCTTGGAGCGGCGTTATATCGCCGAGT
AAGAGGACAGTAACAGCACCAGGGGCAAGAGGGGAAGGAGGAGGAGAAGG
AAAGGATTTGGAATTGGGACGTGATGATTGTGTAAATGTGATGTTTGTGG
AAATGTATGCATCTGGAGAAGCAAACGACTACTTTGCGTATCTATTCTTA
TGTAATTGAAGGGTGAAAAGCACGCGAATAAACACTTATGCATGTACCAA
ACTTGAATGAAAAGAAAAAGTAAAATAAATGCCCTCTCTTTGAACTGATG
TCAGCAAGTTCTACACGCTGTGAGTGGCGGAAATTTTCATCGCCGAGGGG
GGAAAACAAATAAATAGCGACTGGCACTTTGGCTCGACTGAGGGTCGTTC
CTTGATGATTCGTCAAACATTCTACACGACGAGCTTCTCAGTATTCGAAT
ATTGGGCTAAACGCAGCAAGCCGGAGAAAGCAAAGCAGATAAAGCAATAA
ACGGGTG

Coding sequence (CDS) from alignment at scaffold_8:269864..272270-

>mRNA_3869 ID=mRNA_3869|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_8:269864..272270- (Nannochloropsis oceanica)
ATGCATTCCCATGTGGTCAACGAAAAACAGGAGGTCAAAGAGGTGGAGAG
CGTGGCGATGGCGAGAGAAAGCGGCAGAATGACGTCAACAGCTGAAGTAG
TGGAGTCAACAGCTGCTCCTGCTGCTGCTGCGCTTGCTGGTGGGAGGCAA
GCGATGGTGGCTTCTTTAGCCACAGAGACAGTAGAGGAAAAGGAGGGAAA
GTGGTTGAATGGCGCAGGGAGGGTAACACGTGGGAGGGAGGGAGGAGCGT
CTCTAATTAGCAGTAGCAGCCGCTCACCGGGAACAGGCATGTTGCCTTCC
TTCTTTACGCCTTCATTCTCTTCCTCTTTCTCGCCACCCACAAGCCCCCA
CGGGTTATCGGCCCATGCGTCACCTTTGGCCTCTTCTTCCTCTTTCAATC
GATCGTCCTTCCCAGGGCTTACGGATATCACTACTTATGCTACATCTACT
GCTGCTCCTGCTACTGGTACCGATGTGTGTGGGAGTTATTACAACGCAGG
CACACGCCGAGCGCCCCCTAGAAGAGGAAGAGATGAAGACCGAGAAGGCT
CTGGAGAAAGAGGAGGGAGAATGAAAGAAATGGAAATGAGAAAAGAGGAG
GGAGATGAAGGCAAGCACAAACACGAGAAGGAAGTCGACCTCGGCAATGA
CGACGGTATAGACGGGCAGCAGCAAAAAGAGGACAAGGACGTGGAAGAGA
GGGAAGAGGAGGAGCAGAATGTTTTAAAGGAGGAGGGGGTTGTAGAAGAG
AAGGAGGAGGAGGAAGATTTGGGGATTTTGGAGGCGCGATTGCGGGGGTG
GATGATGGAGCGTGAACGATTTGAGCAAGCGCGTGTGGAAGTAGAGGAAC
TTGAAGCCATTCAACAACAACGACGACACCACCCAGGGCAGCAGAAGAAG
GAGCAGGCGTCGACCGAATCCTCTTCTCTTTCGTTATCCACCTCACAGGC
GTCTTCTGCATTGTCGCAAGCAACGCCGTCCAGCCCAAACAGGAGCAGCA
GCAGCAGCACGAGTGTAGGGAGTTTGAGGAGGCGTCAGCAGGAGGAGCGG
CTGCAGGAATTGCGAGAAGTCTTGCGAGAGTATGAAGAGTGGCAAGAACG
GACATTACCTTTAATTAGGGGGGTGCACAGGAAAATCGGACAGCTGAAGC
TGCGTGTGTCAGGAGCGAGGCTGACGACAACAACGACTGCTTCTATCTGA

Synonyms

Publications