jgi.p|Nanoce1779_2|585667, mRNA_3866 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585667
Unique NamemRNA_3866
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_8:261561..262904 +

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Properties
Property NameValue
TranscriptId585753
TrackFilteredModels2
ProteinId585667
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:261561..262904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585667gene_3866Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585667mRNA_3866-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3866CDS_3866Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3866 ID=mRNA_3866|Name=jgi.p|Nanoce1779_2|585667|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
GCACCAGCACCAGCAACAGCAGCAGCAGCAATCGCAACAACAGGAACTCC
ACCCTCAACAACCAGACCAACAACACGGCCCCTCGTCCTTTTCTTTCCCC
CTTACCTGCGATCCATCCTTCATCACCATTGGCGCTTGTCTAGAGGTTTG
CTTTGCCCTTGCCGAAAGGCTTGACGCGCTCGGCCTCCCCCTCCGTCCCT
CCCTCGCCTCTGTTCTCACCCACGACGTCCTTTCCCTTCTCCGCAGAGTC
GCCCATACAGCTTTGCTTCGAATCGACGACGCAGTGGAGAAGGAAGGAGG
AAGGGAGGGAGGGATATTGGTACCAGCGGAGGCCCTTGTGCTCGTGACCC
CCATGTCAGTGACTGCTCGAGTAGACAACTTGCTCTCGGGAGGAGCAGGG
CAAGAAGGAGAGGAAAAAATGGCACCAGATGCAGCAGCAAGGGACGCCCC
TTCCCCCTTCACTTACTCCTCGTCCTCTACACCAGCCCGCCTCTTCCCTG
TTCTCCCTTCCACCCTCCTCCTCCTGGCCGAAATCAATTCCTTAATAATC
AGCTGGGTGATGATGAAAGAAAGCAAAGGCGCGATCGCTCAATATTCTGA
TCTAATGGGTCCTGCGGTGGATAAAATGGTGGTGAGAGAGATTTGCGGGT
TGCTAAGAGACTATGCGGATACGGTGAAGAGGAGGCTCTTGACGGAGGGG
GAGGGAGGAGTAAGAGGAGAAGGAGGAGAAGGAAAGGCAGAAGGTGGAAG
TGGATTAAGGACCACTACGTTGAGCAGCAGTAGCAGCGGCATTGGTAGTG
AAGAAAATTTGACACCTGCAGAGATGAGAAAGAGGGCAGTGACAGCAGAG
GCGCTTCAGGCTATTCGAGGCGTGACGCTCTGGGAGTTGAGCCATACATG
GATTAATGATCCATTGGTTTTGGTCGACCCCTCCTCGGCTGTTATCAAAG
ACATCATCCTCGTGCATGAACTATACGCTTGCGTGATAAAAGCCTTGAAA
GAAGCGAGTGGTGAAGCTGCCATGGCGAGGAGTACTGCTGCTGCTGTCTC
TGATGCGGCTGCTACTTCAGAGGCTCCTGGATCGCCCTCCGCGCCGTCGG
GTCCAGAGAGAGGAAAGATATCGCCGGCCTCGGCTTTCTCACGCTTGACC
ATGGGAAGATGATATTTGGAAATATACACATGCATTGACAAAAAACGAGG
AGGCTGTATAAAAAGGAGGGCGGGGGAGCGTTGAAACTCTTTGCGGGATG
GGCCGCTTGCGCGGCCTATGAATCCTTGTGTCTGTGTCCATCGTTCTCAA
GAATCAAACGAATTGTTGAAAGAAAAGAGGTCGACAATGCTTCA
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protein sequence of jgi.p|Nanoce1779_2|585667

>mRNA_3866-protein ID=mRNA_3866-protein|Name=jgi.p|Nanoce1779_2|585667|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MSVTARVDNLLSGGAGQEGEEKMAPDAAARDAPSPFTYSSSSTPARLFPV
LPSTLLLLAEINSLIISWVMMKESKGAIAQYSDLMGPAVDKMVVREICGL
LRDYADTVKRRLLTEGEGGVRGEGGEGKAEGGSGLRTTTLSSSSSGIGSE
ENLTPAEMRKRAVTAEALQAIRGVTLWELSHTWINDPLVLVDPSSAVIKD
IILVHELYACVIKALKEASGEAAMARSTAAAVSDAAATSEAPGSPSAPSG
PERGKISPASAFSRLTMGR*
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mRNA from alignment at scaffold_8:261561..262904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3866 ID=mRNA_3866|Name=jgi.p|Nanoce1779_2|585667|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at scaffold_8:261561..262904+ (Nannochloropsis oceanica)
GCACCAGCACCAGCAACAGCAGCAGCAGCAATCGCAACAACAGGAACTCC
ACCCTCAACAACCAGACCAACAACACGGCCCCTCGTCCTTTTCTTTCCCC
CTTACCTGCGATCCATCCTTCATCACCATTGGCGCTTGTCTAGAGGTTTG
CTTTGCCCTTGCCGAAAGGCTTGACGCGCTCGGCCTCCCCCTCCGTCCCT
CCCTCGCCTCTGTTCTCACCCACGACGTCCTTTCCCTTCTCCGCAGAGTC
GCCCATACAGCTTTGCTTCGAATCGACGACGCAGTGGAGAAGGAAGGAGG
AAGGGAGGGAGGGATATTGGTACCAGCGGAGGCCCTTGTGCTCGTGACCC
CCATGTCAGTGACTGCTCGAGTAGACAACTTGCTCTCGGGAGGAGCAGGG
CAAGAAGGAGAGGAAAAAATGGCACCAGATGCAGCAGCAAGGGACGCCCC
TTCCCCCTTCACTTACTCCTCGTCCTCTACACCAGCCCGCCTCTTCCCTG
TTCTCCCTTCCACCCTCCTCCTCCTGGCCGAAATCAATTCCTTAATAATC
AGCTGGGTGATGATGAAAGAAAGCAAAGGCGCGATCGCTCAATATTCTGA
TCTAATGGGTCCTGCGGTGGATAAAATGGTGGTGAGAGAGATTTGCGGGT
TGCTAAGAGACTATGCGGATACGGTGAAGAGGAGGCTCTTGACGGAGGGG
GAGGGAGGAGTAAGAGGAGAAGGAGGAGAAGGAAAGGCAGAAGGTGGAAG
TGGATTAAGGACCACTACGTTGAGCAGCAGTAGCAGCGGCATTGGTAGTG
AAGAAAATTTGACACCTGCAGAGATGAGAAAGAGGGCAGTGACAGCAGAG
GCGCTTCAGGCTATTCGAGGCGTGACGCTCTGGGAGTTGAGCCATACATG
GATTAATGATCCATTGGTTTTGGTCGACCCCTCCTCGGCTGTTATCAAAG
ACATCATCCTCGTGCATGAACTATACGCTTGCGTGATAAAAGCCTTGAAA
GAAGCGAGTGGTGAAGCTGCCATGGCGAGGAGTACTGCTGCTGCTGTCTC
TGATGCGGCTGCTACTTCAGAGGCTCCTGGATCGCCCTCCGCGCCGTCGG
GTCCAGAGAGAGGAAAGATATCGCCGGCCTCGGCTTTCTCACGCTTGACC
ATGGGAAGATGATATTTGGAAATATACACATGCATTGACAAAAAACGAGG
AGGCTGTATAAAAAGGAGGGCGGGGGAGCGTTGAAACTCTTTGCGGGATG
GGCCGCTTGCGCGGCCTATGAATCCTTGTGTCTGTGTCCATCGTTCTCAA
GAATCAAACGAATTGTTGAAAGAAAAGAGGTCGACAATGCTTCA
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Coding sequence (CDS) from alignment at scaffold_8:261561..262904+

>mRNA_3866 ID=mRNA_3866|Name=jgi.p|Nanoce1779_2|585667|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_8:261561..262904+ (Nannochloropsis oceanica)
ATGTCAGTGACTGCTCGAGTAGACAACTTGCTCTCGGGAGGAGCAGGGCA
AGAAGGAGAGGAAAAAATGGCACCAGATGCAGCAGCAAGGGACGCCCCTT
CCCCCTTCACTTACTCCTCGTCCTCTACACCAGCCCGCCTCTTCCCTGTT
CTCCCTTCCACCCTCCTCCTCCTGGCCGAAATCAATTCCTTAATAATCAG
CTGGGTGATGATGAAAGAAAGCAAAGGCGCGATCGCTCAATATTCTGATC
TAATGGGTCCTGCGGTGGATAAAATGGTGGTGAGAGAGATTTGCGGGTTG
CTAAGAGACTATGCGGATACGGTGAAGAGGAGGCTCTTGACGGAGGGGGA
GGGAGGAGTAAGAGGAGAAGGAGGAGAAGGAAAGGCAGAAGGTGGAAGTG
GATTAAGGACCACTACGTTGAGCAGCAGTAGCAGCGGCATTGGTAGTGAA
GAAAATTTGACACCTGCAGAGATGAGAAAGAGGGCAGTGACAGCAGAGGC
GCTTCAGGCTATTCGAGGCGTGACGCTCTGGGAGTTGAGCCATACATGGA
TTAATGATCCATTGGTTTTGGTCGACCCCTCCTCGGCTGTTATCAAAGAC
ATCATCCTCGTGCATGAACTATACGCTTGCGTGATAAAAGCCTTGAAAGA
AGCGAGTGGTGAAGCTGCCATGGCGAGGAGTACTGCTGCTGCTGTCTCTG
ATGCGGCTGCTACTTCAGAGGCTCCTGGATCGCCCTCCGCGCCGTCGGGT
CCAGAGAGAGGAAAGATATCGCCGGCCTCGGCTTTCTCACGCTTGACCAT
GGGAAGATGA
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Synonyms
Publications