jgi.p|Nanoce1779_2|554005, mRNA_3865 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554005
Unique NamemRNA_3865
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length725
Alignment locationscaffold_8:257603..258327 -

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Properties
Property NameValue
TranscriptId554091
TrackFilteredModels2
ProteinId554005
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:257603..258327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554005gene_3865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554005mRNA_3865-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3865CDS_3865Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3865 ID=mRNA_3865|Name=jgi.p|Nanoce1779_2|554005|organism=Nannochloropsis oceanica|type=mRNA|length=725bp
GACATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGACACAGAGGTA
TGAAGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTGGAGACAGTCG
TGTGGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGTGGTGTGTCAG
GAGGGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGTGTGGTCACGT
GTTTCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCATGCGAACAACT
GCCCGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGGTGGAGGAGGA
GCAGGAGGAGAGGAAAGCGCTAGATAGCGTGTAGGTGTGTATAGGGGTGC
GCAGGTGTGGTTGTCGGGTAAAGTGGACGTGCGGTGAGCGTAGTCGAGTC
TCCTTGTAGGAAGTGACTTGAGACATGGATAAAAAGAGGATGATGGGTGG
CGCATGGGAGGGGGATGAGGAGAGAGGTGGAGGAGGGACCGCGAGGGTTG
AATCAGCGAGAAGTGTAGGGGAGAGATAAAGACAAATGAGCGCGCCCTTG
CCTAACTTGGGCATCATTTGCTAGAGCAAGATAAGGGAGAGTGTGGTAGC
GGCGGCAACTGCAGTAATCATATTTGGAAATATAGATGTAACGGAAGGGG
CGACAGAAGCAGTAGCAGCAGCAGCAGTAGCAGCAGAAGCAGTTGCAGCA
TCTTCAATGTGCAAAAAAGCGCGGC
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protein sequence of jgi.p|Nanoce1779_2|554005

>mRNA_3865-protein ID=mRNA_3865-protein|Name=jgi.p|Nanoce1779_2|554005|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MSGLIAQLMRGETQRYEAPHASEEAIAALETVVWGGGEEGQERECVVCQE
GFGDGRVLKRMPCGHVFHGECLETWLRRHANNCPVCRREIKSRERGGGGA
GGEESAR*
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mRNA from alignment at scaffold_8:257603..258327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3865 ID=mRNA_3865|Name=jgi.p|Nanoce1779_2|554005|organism=Nannochloropsis oceanica|type=mRNA|length=725bp|location=Sequence derived from alignment at scaffold_8:257603..258327- (Nannochloropsis oceanica)
GACATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGACACAGAGGTA
TGAAGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTGGAGACAGTCG
TGTGGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGTGGTGTGTCAG
GAGGGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGTGTGGTCACGT
GTTTCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCATGCGAACAACT
GCCCGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGGTGGAGGAGGA
GCAGGAGGAGAGGAAAGCGCTAGATAGCGTGTAGGTGTGTATAGGGGTGC
GCAGGTGTGGTTGTCGGGTAAAGTGGACGTGCGGTGAGCGTAGTCGAGTC
TCCTTGTAGGAAGTGACTTGAGACATGGATAAAAAGAGGATGATGGGTGG
CGCATGGGAGGGGGATGAGGAGAGAGGTGGAGGAGGGACCGCGAGGGTTG
AATCAGCGAGAAGTGTAGGGGAGAGATAAAGACAAATGAGCGCGCCCTTG
CCTAACTTGGGCATCATTTGCTAGAGCAAGATAAGGGAGAGTGTGGTAGC
GGCGGCAACTGCAGTAATCATATTTGGAAATATAGATGTAACGGAAGGGG
CGACAGAAGCAGTAGCAGCAGCAGCAGTAGCAGCAGAAGCAGTTGCAGCA
TCTTCAATGTGCAAAAAAGCGCGGC
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Coding sequence (CDS) from alignment at scaffold_8:257603..258327-

>mRNA_3865 ID=mRNA_3865|Name=jgi.p|Nanoce1779_2|554005|organism=Nannochloropsis oceanica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_8:257603..258327- (Nannochloropsis oceanica)
ATGAGCGGCTTGATTGCTCAGTTGATGAGGGGCGAGACACAGAGGTATGA
AGCTCCTCATGCTAGTGAAGAGGCGATTGCGGCGTTGGAGACAGTCGTGT
GGGGTGGGGGGGAGGAGGGGCAGGAGAGGGAGTGTGTGGTGTGTCAGGAG
GGGTTCGGGGATGGGAGGGTCTTGAAGAGAATGCCGTGTGGTCACGTGTT
TCATGGAGAGTGCCTGGAGACCTGGTTGAGAAGGCATGCGAACAACTGCC
CGGTGTGTAGGAGGGAGATCAAGAGTAGGGAGAGAGGTGGAGGAGGAGCA
GGAGGAGAGGAAAGCGCTAGATAG
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Synonyms
Publications