jgi.p|Nanoce1779_2|585658, mRNA_3864 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585658
Unique Name	mRNA_3864
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1378
Alignment location	scaffold_8:256241..257618 -

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Properties


Property Name	Value
TranscriptId	585744
Track	FilteredModels2
ProteinId	585658

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:256241..257618 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585658	gene_3864	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585658	mRNA_3864-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3864	CDS_3864	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:256241..257618-
coding sequence from alignment at scaffold_8:256241..257618-

mRNA sequence

>mRNA_3864 ID=mRNA_3864|Name=jgi.p|Nanoce1779_2|585658|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp
TGCAAAAAAGCGCGGCATTTCATTTCTTCTGTTAAATATTTATTTTCGCA
GTATCTCTCTCTCGGTCATAGGGGGGGTAAAGAGAGGGATTGAGGTCCAT
CAGCCCTCCCTCCCCCACTCCCTTTAGTGTTTTTGTCGCCGACAATATGT
TCCCTTTGCAGACATGGAGGTTTCCTTCCGTACTATCAATTTAAATTTTG
GTTTGAATCGATCTTTTCACATCGTTTTATACGCTCTCTCTCTCTGACTT
TCCCTTCTTCTCCTTCTATTCCGTCCACTCCTCGTGTCGGGACTCTCTCA
CGTGCACTCCATACTTACTCATTCGTCTTTATCTTTCGCTCTCCCTCCCT
CTCTTCCTCTCTCCATGCTTATGTGTTCGTTGTGTCGACATCTCATATCA
CCCACAAGCCATGCATACACTCGCCTCCACTCCCCTTCATTCGCCTGGAA
AAATCATCCATTTCCCTCTTCTACAGTGACAGACTCCCACTCCTCCTTCC
CTCCCTCCTCCGCACCCTGATGCATGAGATGTGTGTATTCATACATCTCT
CCTCTCCACTTTCACTTCTCTTGTCATTTTTCTTTTCTTTCTTGTTATCG
TCATCTCAAAAAAATGCAAGTCAGCAATTCACTTACCAGCACCCACTAAA
ATTACTCAGGACCGCCCTTCTCCTCTCTCTTCTCCTTCCTTCAACTCTCT
TCCTCTACCTCCCTCTTCTCTCTCTGCTTCCCCTGCAGTTGTTTACTGTC
ATGTACAAAGACAAAGGCAGTCAGGGGAAGAGGGGGTAGAGCGAGTCCGA
GGGAAAGTCCGAGGTGCAAAATGGGTAGACCGCATAGATGTGGTATCGAA
TAAATTTATCAATTGTCTCTCTCTCAGAGTGGATCTTCTCGATGTTTCTT
GCTCTCTCTAACCCTATCCTCTGACGATGAATAAAGCCACACACAAGCCT
CCCAAACAGAAAACGTCTTTCAAAATGAGTGAGATGTGATTACTGTGGCT
GTAGCTGTAGCATAGAGCAGCAGCACACACAAAAGAGTGTGTGCGTCGAT
ACCCACTGATGTCCATGCCCGCGCTTCTGCATTCTCACTCTCCCTTGCTT
CGTCCTCCTTCCTCCGTTCACTCTTCCCCTCCCTTTCATTCGAACTTCCA
CTCGCATCTCTCCAGTGAGTCAACATCGTCGTCCTCCCAGCACACGCTCT
TCTCTCTAATTCTTTCTTTCTCATTCATTCATCCCATCCCGATCCCTGAA
ATGTAAAAACAGAAAATGAAAGAGAGAAACAGGCACCAAAAAATGAATTC
GTTCACCGTCCCACTCTGTCTCCCTCCCTCCCTTCCTCCCACCCTCCCTC
CCTCTCTCTCGCCCTCAGTACACTGGAC

protein sequence of jgi.p|Nanoce1779_2|585658

>mRNA_3864-protein ID=mRNA_3864-protein|Name=jgi.p|Nanoce1779_2|585658|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MHEMCVFIHLSSPLSLLLSFFFSFLLSSSQKNASQQFTYQHPLKLLRTAL
LLSLLLPSTLFLYLPLLSLLPLQLFTVMYKDKGSQGKRG*

mRNA from alignment at scaffold_8:256241..257618-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3864 ID=mRNA_3864|Name=jgi.p|Nanoce1779_2|585658|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp|location=Sequence derived from alignment at scaffold_8:256241..257618- (Nannochloropsis oceanica)
TGCAAAAAAGCGCGGCATTTCATTTCTTCTGTTAAATATTTATTTTCGCA
GTATCTCTCTCTCGGTCATAGGGGGGGTAAAGAGAGGGATTGAGGTCCAT
CAGCCCTCCCTCCCCCACTCCCTTTAGTGTTTTTGTCGCCGACAATATGT
TCCCTTTGCAGACATGGAGGTTTCCTTCCGTACTATCAATTTAAATTTTG
GTTTGAATCGATCTTTTCACATCGTTTTATACGCTCTCTCTCTCTGACTT
TCCCTTCTTCTCCTTCTATTCCGTCCACTCCTCGTGTCGGGACTCTCTCA
CGTGCACTCCATACTTACTCATTCGTCTTTATCTTTCGCTCTCCCTCCCT
CTCTTCCTCTCTCCATGCTTATGTGTTCGTTGTGTCGACATCTCATATCA
CCCACAAGCCATGCATACACTCGCCTCCACTCCCCTTCATTCGCCTGGAA
AAATCATCCATTTCCCTCTTCTACAGTGACAGACTCCCACTCCTCCTTCC
CTCCCTCCTCCGCACCCTGATGCATGAGATGTGTGTATTCATACATCTCT
CCTCTCCACTTTCACTTCTCTTGTCATTTTTCTTTTCTTTCTTGTTATCG
TCATCTCAAAAAAATGCAAGTCAGCAATTCACTTACCAGCACCCACTAAA
ATTACTCAGGACCGCCCTTCTCCTCTCTCTTCTCCTTCCTTCAACTCTCT
TCCTCTACCTCCCTCTTCTCTCTCTGCTTCCCCTGCAGTTGTTTACTGTC
ATGTACAAAGACAAAGGCAGTCAGGGGAAGAGGGGGTAGAGCGAGTCCGA
GGGAAAGTCCGAGGTGCAAAATGGGTAGACCGCATAGATGTGGTATCGAA
TAAATTTATCAATTGTCTCTCTCTCAGAGTGGATCTTCTCGATGTTTCTT
GCTCTCTCTAACCCTATCCTCTGACGATGAATAAAGCCACACACAAGCCT
CCCAAACAGAAAACGTCTTTCAAAATGAGTGAGATGTGATTACTGTGGCT
GTAGCTGTAGCATAGAGCAGCAGCACACACAAAAGAGTGTGTGCGTCGAT
ACCCACTGATGTCCATGCCCGCGCTTCTGCATTCTCACTCTCCCTTGCTT
CGTCCTCCTTCCTCCGTTCACTCTTCCCCTCCCTTTCATTCGAACTTCCA
CTCGCATCTCTCCAGTGAGTCAACATCGTCGTCCTCCCAGCACACGCTCT
TCTCTCTAATTCTTTCTTTCTCATTCATTCATCCCATCCCGATCCCTGAA
ATGTAAAAACAGAAAATGAAAGAGAGAAACAGGCACCAAAAAATGAATTC
GTTCACCGTCCCACTCTGTCTCCCTCCCTCCCTTCCTCCCACCCTCCCTC
CCTCTCTCTCGCCCTCAGTACACTGGAC

Coding sequence (CDS) from alignment at scaffold_8:256241..257618-

>mRNA_3864 ID=mRNA_3864|Name=jgi.p|Nanoce1779_2|585658|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_8:256241..257618- (Nannochloropsis oceanica)
ATGCATGAGATGTGTGTATTCATACATCTCTCCTCTCCACTTTCACTTCT
CTTGTCATTTTTCTTTTCTTTCTTGTTATCGTCATCTCAAAAAAATGCAA
GTCAGCAATTCACTTACCAGCACCCACTAAAATTACTCAGGACCGCCCTT
CTCCTCTCTCTTCTCCTTCCTTCAACTCTCTTCCTCTACCTCCCTCTTCT
CTCTCTGCTTCCCCTGCAGTTGTTTACTGTCATGTACAAAGACAAAGGCA
GTCAGGGGAAGAGGGGGTAG

Synonyms

Publications