jgi.p|Nanoce1779_2|527127, mRNA_3863 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527127
Unique NamemRNA_3863
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length879
Alignment locationscaffold_8:254841..256168 +

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Properties
Property NameValue
TranscriptId527213
TrackFilteredModels2
ProteinId527127
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:254841..256168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527127gene_3863Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527127mRNA_3863-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3863CDS_3863Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3863 ID=mRNA_3863|Name=jgi.p|Nanoce1779_2|527127|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGGACTTGCTCTTGAATCAGGACGGGAAAGGAGGTGGGTCGGGTGGTGG
TGGAAGGAAAGTATGCAAGAGCGATGCATGTGACCTGCCCACGGCCAAGC
GGTCTCCCTATTGCCCTCAGCACACGGGCGCGAGGCACTGCCAACACCCA
GGCTGCACGAAATGCGCGCAAGGAAACACCAAATTCTGTATTGCCCATGG
CGGTGGTCGGCGGTGTACTTATCCAGGCTGCACCAAGGGCGCCCGAGACA
AAAACTTTTGTGCGGCGCACGGTGGAGGCAAGCGTTGCTGCATCGATGGC
TGCACTAAGTCGGCAGTCGGAGGCTCCTTTATGTGCACTGCGCACGGCGG
CGGCCGCCGGTGCCAGTATCAGGAATGCACACGCTCGGCGCAATCCAGCA
CAAATTTCTGCGTGCGACACGGGGGGGGAAGGAAATGTCAGGTGGAGGGG
TGTCAGAAGGTGGCTCGAGGAAGGACGAGCTTCTGTGCGGCCCATGGGGG
GGGGATCAGGTGCAAAGTGTCGGGATGTAACAAGGCGGCGGTGGGTAAAT
TTCAAATGTGTCGAACGCACAGCGGGTATCCTAAAAAGAGGGCAAGCGAG
CAGCAGGAGGGCGAGGGCGGGGGGGAGGAAGTGGGGGAGGATGGGGGGTT
CTTGCCGAGTTCGTTAATGTCGTCGTCGCCGTCGTCCTCCTCGTCTTCGG
TGGGAACGATTGGAGACCTGCATAACGTCAACCCAGCCAAGAAGAGAATG
ATTGCGTTGGGCACGGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAAGAGAAGTATGGGACACCCAAGAATGCCATGGCTACGTACGCGGCAG
CTTTTAACTCTTACCCGCCTCCGCTGTAA
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protein sequence of jgi.p|Nanoce1779_2|527127

>mRNA_3863-protein ID=mRNA_3863-protein|Name=jgi.p|Nanoce1779_2|527127|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MDLLLNQDGKGGGSGGGGRKVCKSDACDLPTAKRSPYCPQHTGARHCQHP
GCTKCAQGNTKFCIAHGGGRRCTYPGCTKGARDKNFCAAHGGGKRCCIDG
CTKSAVGGSFMCTAHGGGRRCQYQECTRSAQSSTNFCVRHGGGRKCQVEG
CQKVARGRTSFCAAHGGGIRCKVSGCNKAAVGKFQMCRTHSGYPKKRASE
QQEGEGGGEEVGEDGGFLPSSLMSSSPSSSSSSVGTIGDLHNVNPAKKRM
IALGTEGRKEGGREGGREEKYGTPKNAMATYAAAFNSYPPPL*
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mRNA from alignment at scaffold_8:254841..256168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3863 ID=mRNA_3863|Name=jgi.p|Nanoce1779_2|527127|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp|location=Sequence derived from alignment at scaffold_8:254841..256168+ (Nannochloropsis oceanica)
ATGGACTTGCTCTTGAATCAGGACGGGAAAGGAGGTGGGTCGGGTGGTGG
TGGAAGGAAAGTATGCAAGAGCGATGCATGTGACCTGCCCACGGCCAAGC
GGTCTCCCTATTGCCCTCAGCACACGGGCGCGAGGCACTGCCAACACCCA
GGTGCGGAGGGAGGGAGGGAAGGAGGGAGGGGGGGGAGGGAATGAGCCGG
AGCCAACGATTAGCAAGACGCTGACATACTCTCCCTTCCTCCCCTCCCTT
CCTCCCTTTCTCCTCGCTTTCCTCAGGCTGCACGAAATGCGCGCAAGGAA
ACACCAAATTCTGTATTGCCCATGGCGGTGGTCGGCGGTGTACTTATCCA
GGCTGCACCAAGGGCGCCCGAGACAAAAACTTTTGTGCGGCGCACGGTGG
AGGCAAGGTATGAAGGCGGGAGAGAGGGAGGGAGAGAGGGATAGTGATTG
TATGTGTGCCGTTTCTGGGCCGCAACAAGGATATAAAGACCATTACCTGC
GGGTGGCGCGCAAATGGGGGGGGGGGAGGAGGAATAGAGCGATGGTTTGT
GAGTGTTTCCTCTTCCCTCCCTTAATACGACTGCTGCATCGATGGCTGGC
GTCAGTTGGCTGTCGATGGCTCCTTCACGTGCAACGGTCACAGCGGTGAC
CGCAGATGTTAGTACCAAGAATGCACCCATGCCCTCCCTTTCCTCCCTTT
CCTCCCTCTACCTCCATTTCCCCCTCTACAGCGTTGCTGCATCGATGGCT
GCACTAAGTCGGCAGTCGGAGGCTCCTTTATGTGCACTGCGCACGGCGGC
GGCCGCCGGTGCCAGTATCAGGAATGCACACGCTCGGCGCAATCCAGCAC
AAATTTCTGCGTGCGACACGGGGGGGGAAGGAAATGTCAGGTGGAGGGGT
GTCAGAAGGTGGCTCGAGGAAGGACGAGCTTCTGTGCGGCCCATGGGGGG
GGGATCAGGTGCAAAGTGTCGGGATGTAACAAGGCGGCGGTGGGTAAATT
TCAAATGTGTCGAACGCACAGCGGGTATCCTAAAAAGAGGGCAAGCGAGC
AGCAGGAGGGCGAGGGCGGGGGGGAGGAAGTGGGGGAGGATGGGGGGTTC
TTGCCGAGTTCGTTAATGTCGTCGTCGCCGTCGTCCTCCTCGTCTTCGGT
GGGAACGATTGGAGACCTGCATAACGTCAACCCAGCCAAGAAGAGAATGA
TTGCGTTGGGCACGGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGG
GAAGAGAAGTATGGGACACCCAAGAATGCCATGGCTACGTACGCGGCAGC
TTTTAACTCTTACCCGCCTCCGCTGTAA
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Coding sequence (CDS) from alignment at scaffold_8:254841..256168+

>mRNA_3863 ID=mRNA_3863|Name=jgi.p|Nanoce1779_2|527127|organism=Nannochloropsis oceanica|type=CDS|length=2637bp|location=Sequence derived from alignment at scaffold_8:254841..256168+ (Nannochloropsis oceanica)
ATGGACTTGCTCTTGAATCAGGACGGGAAAGGAGGTGGGTCGGGTGGTGG
TGGAAGGAAAGTATGCAAGAGCGATGCATGTGACCTGCCCACGGCCAAGC
GGTCTCCCTATTGCCCTCAGCACACGGGCGCGAGGCACTGCCAACACCCA
GGCTGCACGAAATGCGCGCAAGGAAACACCAAATTCTGTATTGCCCATGG
CGGTGGTCGGCGGTGTACTTATCCAGGCTGCACCAAGGGCGCCCGAGACA
AAAACTTTTGTGCGGCGCACGGTGGAGGCAAGCGTTGCTGCATCGATGGC
TGCACTAAGTCGGCAGTCGGAGGCTCCTTTATGTGCACTGCGCACGGCGG
CGGCCGCCGGTGCCAGTATCAGGAATGCACACGCTCGGCGCAATCCAGCA
CAAATTTCTGCGTGCGACACGGGGGGGGAAGGAAATGTCAGGTGGAGGGG
TGTCAGAAGGTGGCTCGAGGAAGGACGAGCTTCTGTGCGGCCCATGGGGG
GGGGATCAGGTGCAAAGTGTCGGGATGTAACAAGGCGGCGGTGGGTAAAT
TTCAAATGTGTCGAACGCACAGCGGGTATCCTAAAAAGAGGGCAAGCGAG
CAGCAGGAGGGCGAGGGCGGGGGGGAGGAAGTGGGGGAGGATGGGGGGTT
CTTGCCGAGTTCGTTAATGTCGTCGTCGCCGTCGTCCTCCTCGTCTTCGG
TGGGAACGATTGGAGACCTGCATAACGTCAACCCAGCCAAGAAGAGAATG
ATTGCGTTGGGCACGGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAG
GGAAGAGAAGTATGGGACACCCAAGAATGCCATGGCTACGTACGCGGCAG
CTTTTAACTCTTACCCGCCTCCGCTGTAAATGGACTTGCTCTTGAATCAG
GACGGGAAAGGAGGTGGGTCGGGTGGTGGTGGAAGGAAAGTATGCAAGAG
CGATGCATGTGACCTGCCCACGGCCAAGCGGTCTCCCTATTGCCCTCAGC
ACACGGGCGCGAGGCACTGCCAACACCCAGGCTGCACGAAATGCGCGCAA
GGAAACACCAAATTCTGTATTGCCCATGGCGGTGGTCGGCGGTGTACTTA
TCCAGGCTGCACCAAGGGCGCCCGAGACAAAAACTTTTGTGCGGCGCACG
GTGGAGGCAAGCGTTGCTGCATCGATGGCTGCACTAAGTCGGCAGTCGGA
GGCTCCTTTATGTGCACTGCGCACGGCGGCGGCCGCCGGTGCCAGTATCA
GGAATGCACACGCTCGGCGCAATCCAGCACAAATTTCTGCGTGCGACACG
GGGGGGGAAGGAAATGTCAGGTGGAGGGGTGTCAGAAGGTGGCTCGAGGA
AGGACGAGCTTCTGTGCGGCCCATGGGGGGGGGATCAGGTGCAAAGTGTC
GGGATGTAACAAGGCGGCGGTGGGTAAATTTCAAATGTGTCGAACGCACA
GCGGGTATCCTAAAAAGAGGGCAAGCGAGCAGCAGGAGGGCGAGGGCGGG
GGGGAGGAAGTGGGGGAGGATGGGGGGTTCTTGCCGAGTTCGTTAATGTC
GTCGTCGCCGTCGTCCTCCTCGTCTTCGGTGGGAACGATTGGAGACCTGC
ATAACGTCAACCCAGCCAAGAAGAGAATGATTGCGTTGGGCACGGAGGGA
AGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGAAGTATGGGACACC
CAAGAATGCCATGGCTACGTACGCGGCAGCTTTTAACTCTTACCCGCCTC
CGCTGTAAATGGACTTGCTCTTGAATCAGGACGGGAAAGGAGGTGGGTCG
GGTGGTGGTGGAAGGAAAGTATGCAAGAGCGATGCATGTGACCTGCCCAC
GGCCAAGCGGTCTCCCTATTGCCCTCAGCACACGGGCGCGAGGCACTGCC
AACACCCAGGCTGCACGAAATGCGCGCAAGGAAACACCAAATTCTGTATT
GCCCATGGCGGTGGTCGGCGGTGTACTTATCCAGGCTGCACCAAGGGCGC
CCGAGACAAAAACTTTTGTGCGGCGCACGGTGGAGGCAAGCGTTGCTGCA
TCGATGGCTGCACTAAGTCGGCAGTCGGAGGCTCCTTTATGTGCACTGCG
CACGGCGGCGGCCGCCGGTGCCAGTATCAGGAATGCACACGCTCGGCGCA
ATCCAGCACAAATTTCTGCGTGCGACACGGGGGGGGAAGGAAATGTCAGG
TGGAGGGGTGTCAGAAGGTGGCTCGAGGAAGGACGAGCTTCTGTGCGGCC
CATGGGGGGGGGATCAGGTGCAAAGTGTCGGGATGTAACAAGGCGGCGGT
GGGTAAATTTCAAATGTGTCGAACGCACAGCGGGTATCCTAAAAAGAGGG
CAAGCGAGCAGCAGGAGGGCGAGGGCGGGGGGGAGGAAGTGGGGGAGGAT
GGGGGGTTCTTGCCGAGTTCGTTAATGTCGTCGTCGCCGTCGTCCTCCTC
GTCTTCGGTGGGAACGATTGGAGACCTGCATAACGTCAACCCAGCCAAGA
AGAGAATGATTGCGTTGGGCACGGAGGGAAGGAAGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGAGAAGTATGGGACACCCAAGAATGCCATGGCTACGTA
CGCGGCAGCTTTTAACTCTTACCCGCCTCCGCTGTAA
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Synonyms
Publications