jgi.p|Nanoce1779_2|585639, mRNA_3860 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585639
Unique Name	mRNA_3860
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1236
Alignment location	scaffold_8:241923..243158 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585725
Track	FilteredModels2
ProteinId	585639

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:241923..243158 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585639	gene_3860	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585639	mRNA_3860-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3860	CDS_3860	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:241923..243158+
coding sequence from alignment at scaffold_8:241923..243158+

mRNA sequence

>mRNA_3860 ID=mRNA_3860|Name=jgi.p|Nanoce1779_2|585639|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
TCCCACTCAAACCTCCCTCCCTCTCCCGCTTCGCCTGCTCTTTCCTCTCC
GACGCCTCCCTCCGTTCCTCCTCCTCCTCCTCCACTGTCAGCCTCGGCGC
ATGAGGGTAACACACTACCTTCTCCCCTCCCCACCTTTCATACCTCTTCT
TCGTCTGCCTGTCCCTCTTCACCCACTCCTCCCTCTTCACCCCTCCCTCC
TTCCAGCCCTCCACCACCATGGCCACAACTACGTCCATATTCGACGATCG
GTAAGGAGGCAAGCTGGCTGGGACAATCTCCCGACATACAGGACAACACC
GATGCTGCTGCGGCTGCTGCTGAAAATGGGCACGTATACACGAGAAGCAG
AAGGCATGGGAGCAGGGCAAGACCCCCGCGTCCACCATCAGCTCCGAGCA
CAACGCACACCCCAGCTCTCCCTCCAATTCCGCTAACACCTCCGCCTTTC
CCCTCCCCTCCCTTCCTTCCTCCATCGTCTTTGTCGTCCTAACCGCCTTG
AGCTTGTCCAATTGCGTCTGCAAACTAGTCCTTGCTCTCCTCAACTCGAT
TATCTCGCCCTCCATCTCCTTCCTACGTTCCTCTCCCGCCTTCTCCTTCT
CTACGACTGCGGTCGCTGCCGCCGCCGCTGCCACAGCCTGATTCTTCAGC
TCCTCATTTTTAATCCGCGATTCTGCAACAGCAGCATCTGCTCTTGCTTC
TGCTGCCATGAGCTCTGCATCCTTTGCTCGCAAGGCCTCTCTCCATCCTT
CCCCCCTCTTCCGTTCCTCCTTCACTTCCTCCTCCACCTCTCGAGCCTTT
TTTTCTGTTGCCACAGCTGCTGCCACTGCTGCTGCTGCTTGCCGAAGACC
GAGGGAGGGAGCCATGTTGAGGGCCGCAAAGACCCACCCTTCCTCCTGTC
GGGCTGTGGCGAGGGCCTCGCGCAAAGAGGCGATTTCCGCTTGCTGTTGT
TCGATCTGCTCCAGCTGCAGCTGTTGCTGCTGCTCTTCCCGTAGGTTGGA
AGAAATGGCTCTCATTGCCCCCGCCTTTTGCTTCATCGTCTTGATGGTGG
TGGTACCGATGCTACTGCTACCTCTGCCACTGGCGGTGACAGCAGTAGCA
GCAATGCCATTTGAGACCCGTCGTCGCTTACTCTCTGTGCCGCACCCTTG
TCTTTCCTCTCCTTTTCCTCCTCCTCCTCCCCCTCCTCTTTCCGCACCTC
TGCTCTTAAAACTCCCCGCGCCACTGCTAGTCTGAC

protein sequence of jgi.p|Nanoce1779_2|585639

>mRNA_3860-protein ID=mRNA_3860-protein|Name=jgi.p|Nanoce1779_2|585639|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MSSASFARKASLHPSPLFRSSFTSSSTSRAFFSVATAAATAAAACRRPRE
GAMLRAAKTHPSSCRAVARASRKEAISACCCSICSSCSCCCCSSRRLEEM
ALIAPAFCFIVLMVVVPMLLLPLPLAVTAVAAMPFETRRRLLSVPHPCLS
SPFPPPPPPPLSAPLLLKLPAPLLV*

mRNA from alignment at scaffold_8:241923..243158+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3860 ID=mRNA_3860|Name=jgi.p|Nanoce1779_2|585639|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp|location=Sequence derived from alignment at scaffold_8:241923..243158+ (Nannochloropsis oceanica)
TCCCACTCAAACCTCCCTCCCTCTCCCGCTTCGCCTGCTCTTTCCTCTCC
GACGCCTCCCTCCGTTCCTCCTCCTCCTCCTCCACTGTCAGCCTCGGCGC
ATGAGGGTAACACACTACCTTCTCCCCTCCCCACCTTTCATACCTCTTCT
TCGTCTGCCTGTCCCTCTTCACCCACTCCTCCCTCTTCACCCCTCCCTCC
TTCCAGCCCTCCACCACCATGGCCACAACTACGTCCATATTCGACGATCG
GTAAGGAGGCAAGCTGGCTGGGACAATCTCCCGACATACAGGACAACACC
GATGCTGCTGCGGCTGCTGCTGAAAATGGGCACGTATACACGAGAAGCAG
AAGGCATGGGAGCAGGGCAAGACCCCCGCGTCCACCATCAGCTCCGAGCA
CAACGCACACCCCAGCTCTCCCTCCAATTCCGCTAACACCTCCGCCTTTC
CCCTCCCCTCCCTTCCTTCCTCCATCGTCTTTGTCGTCCTAACCGCCTTG
AGCTTGTCCAATTGCGTCTGCAAACTAGTCCTTGCTCTCCTCAACTCGAT
TATCTCGCCCTCCATCTCCTTCCTACGTTCCTCTCCCGCCTTCTCCTTCT
CTACGACTGCGGTCGCTGCCGCCGCCGCTGCCACAGCCTGATTCTTCAGC
TCCTCATTTTTAATCCGCGATTCTGCAACAGCAGCATCTGCTCTTGCTTC
TGCTGCCATGAGCTCTGCATCCTTTGCTCGCAAGGCCTCTCTCCATCCTT
CCCCCCTCTTCCGTTCCTCCTTCACTTCCTCCTCCACCTCTCGAGCCTTT
TTTTCTGTTGCCACAGCTGCTGCCACTGCTGCTGCTGCTTGCCGAAGACC
GAGGGAGGGAGCCATGTTGAGGGCCGCAAAGACCCACCCTTCCTCCTGTC
GGGCTGTGGCGAGGGCCTCGCGCAAAGAGGCGATTTCCGCTTGCTGTTGT
TCGATCTGCTCCAGCTGCAGCTGTTGCTGCTGCTCTTCCCGTAGGTTGGA
AGAAATGGCTCTCATTGCCCCCGCCTTTTGCTTCATCGTCTTGATGGTGG
TGGTACCGATGCTACTGCTACCTCTGCCACTGGCGGTGACAGCAGTAGCA
GCAATGCCATTTGAGACCCGTCGTCGCTTACTCTCTGTGCCGCACCCTTG
TCTTTCCTCTCCTTTTCCTCCTCCTCCTCCCCCTCCTCTTTCCGCACCTC
TGCTCTTAAAACTCCCCGCGCCACTGCTAGTCTGAC

Coding sequence (CDS) from alignment at scaffold_8:241923..243158+

>mRNA_3860 ID=mRNA_3860|Name=jgi.p|Nanoce1779_2|585639|organism=Nannochloropsis oceanica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_8:241923..243158+ (Nannochloropsis oceanica)
ATGAGCTCTGCATCCTTTGCTCGCAAGGCCTCTCTCCATCCTTCCCCCCT
CTTCCGTTCCTCCTTCACTTCCTCCTCCACCTCTCGAGCCTTTTTTTCTG
TTGCCACAGCTGCTGCCACTGCTGCTGCTGCTTGCCGAAGACCGAGGGAG
GGAGCCATGTTGAGGGCCGCAAAGACCCACCCTTCCTCCTGTCGGGCTGT
GGCGAGGGCCTCGCGCAAAGAGGCGATTTCCGCTTGCTGTTGTTCGATCT
GCTCCAGCTGCAGCTGTTGCTGCTGCTCTTCCCGTAGGTTGGAAGAAATG
GCTCTCATTGCCCCCGCCTTTTGCTTCATCGTCTTGATGGTGGTGGTACC
GATGCTACTGCTACCTCTGCCACTGGCGGTGACAGCAGTAGCAGCAATGC
CATTTGAGACCCGTCGTCGCTTACTCTCTGTGCCGCACCCTTGTCTTTCC
TCTCCTTTTCCTCCTCCTCCTCCCCCTCCTCTTTCCGCACCTCTGCTCTT
AAAACTCCCCGCGCCACTGCTAGTCTGA

Synonyms

Publications