jgi.p|Nanoce1779_2|585634, mRNA_3859 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585634
Unique NamemRNA_3859
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1291
Alignment locationscaffold_8:237049..238339 +

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Properties
Property NameValue
TranscriptId585720
TrackFilteredModels2
ProteinId585634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:237049..238339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585634gene_3859Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585634mRNA_3859-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3859CDS_3859Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3859 ID=mRNA_3859|Name=jgi.p|Nanoce1779_2|585634|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp
TTGGCCTTCCCCCCGCCCTCCCTAGCCGAGGCGTCTCGCTCCAATCGTTG
CCTCCCTTGGTGGCGGAGGAGTATGGGAGGGAGGAAGGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGGGTCAAGTAACTTTGTTTTTGACGAGGCGGACC
TCGAAGGATTGTTTGAGGAAGGGTCACTTAAGGAAGAGTTTCATTCCTTC
CCTCCCTGGTCCCTTCCTTTCGCCCATGTGGGAGGAAAGCAACTGGCTCT
TATGCAGCTGGCGCGGCATAGAGGAGGAGGAGGGGGGGAGGAGGAGATGG
AGGAAGGGGAGAAGGGCACGGGACAGAGCGGCCGTGCCCTTCGTATGCGC
CGCGTGAAATACTACGATTGCGAAGATGACAAAGGCGAGGAAGAGGAAGA
GGAAGAGGGAGGGGTGGAGGAAGGGCTCACCAAGACGAGCCATTCTAGCA
CCACCACTTCCACCTTCCCATCCTTCTCGTCTTCTTCCTCCTCTTCCCCC
TCCTCCTTCTTCTCCTGCGCTTCCTCCTCCACTGCTAACACCACTCTCTT
CCCTTACCACTACCCCGGCCGTCCGGCGCCCGTTGGAAAGGAGCTTCCCG
ATCGAGGGAGGCACAAGTGCCGTGTTCCAGGGTGCTCAGATGATTACCGG
TGGCCCGACTACAAGTGCAAGGCGCACGGTGGAGGCCGCTGTCAATTTAT
GTGGTGGAGGAGGGAAGGAGTGGGAGAGGGAGGGATGGAGGCGTGCCCGA
AGTTCCATCAATCCAAGAATTCGCGTGGGGAATTACTGTGTGGTGAACAT
TGTCGTCTGACGGGAGCCGTCTATGGCGAGGTGTCAAGGAGAGGGGGGAA
GGCGGCAAAAGGGGCGGGGGGATTAAAAAAAGGGAAGAGAACGGCGAAAA
AAAAAGTCTGGGGTTGAGATGAGTAGGCACATACATACAAACAGGGCGAA
ACGGAAAGAGTCGGAGGACGGGAAGGAGGAAGAGGGGAATAGCGAAAGGC
GTAGAGCAAGCTTGACGAGGAAAACTACCTAGTGTAAGAAAGTAATAGAC
ATAATTGTTGTGGATGTAAGTGGTAACGACCTAGTTCAAGATCGAGTCAA
AACGAGAAAGAAGAAGAAGGAAGAAAAGGGAAGGAAAAGAAAAGACTGGA
AATTGAAGCCTATATTTACAACTTAAAATTGAGGAAGACGACGAGTCGAA
GGCAAGACACTCACAATGTAAGAGAAACGAAGAAATAAGAAATGGGAGAG
CAGCTTAAAATGAAGAATGAAGAGTAAAGCAGGCGTGTTGA
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protein sequence of jgi.p|Nanoce1779_2|585634

>mRNA_3859-protein ID=mRNA_3859-protein|Name=jgi.p|Nanoce1779_2|585634|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MQLARHRGGGGGEEEMEEGEKGTGQSGRALRMRRVKYYDCEDDKGEEEEE
EEGGVEEGLTKTSHSSTTTSTFPSFSSSSSSSPSSFFSCASSSTANTTLF
PYHYPGRPAPVGKELPDRGRHKCRVPGCSDDYRWPDYKCKAHGGGRCQFM
WWRREGVGEGGMEACPKFHQSKNSRGELLCGEHCRLTGAVYGEVSRRGGK
AAKGAGGLKKGKRTAKKKVWG*
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mRNA from alignment at scaffold_8:237049..238339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3859 ID=mRNA_3859|Name=jgi.p|Nanoce1779_2|585634|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp|location=Sequence derived from alignment at scaffold_8:237049..238339+ (Nannochloropsis oceanica)
TTGGCCTTCCCCCCGCCCTCCCTAGCCGAGGCGTCTCGCTCCAATCGTTG
CCTCCCTTGGTGGCGGAGGAGTATGGGAGGGAGGAAGGGAGGAAGGGAGG
GAGGGAGGGAGGGAGGGGGTCAAGTAACTTTGTTTTTGACGAGGCGGACC
TCGAAGGATTGTTTGAGGAAGGGTCACTTAAGGAAGAGTTTCATTCCTTC
CCTCCCTGGTCCCTTCCTTTCGCCCATGTGGGAGGAAAGCAACTGGCTCT
TATGCAGCTGGCGCGGCATAGAGGAGGAGGAGGGGGGGAGGAGGAGATGG
AGGAAGGGGAGAAGGGCACGGGACAGAGCGGCCGTGCCCTTCGTATGCGC
CGCGTGAAATACTACGATTGCGAAGATGACAAAGGCGAGGAAGAGGAAGA
GGAAGAGGGAGGGGTGGAGGAAGGGCTCACCAAGACGAGCCATTCTAGCA
CCACCACTTCCACCTTCCCATCCTTCTCGTCTTCTTCCTCCTCTTCCCCC
TCCTCCTTCTTCTCCTGCGCTTCCTCCTCCACTGCTAACACCACTCTCTT
CCCTTACCACTACCCCGGCCGTCCGGCGCCCGTTGGAAAGGAGCTTCCCG
ATCGAGGGAGGCACAAGTGCCGTGTTCCAGGGTGCTCAGATGATTACCGG
TGGCCCGACTACAAGTGCAAGGCGCACGGTGGAGGCCGCTGTCAATTTAT
GTGGTGGAGGAGGGAAGGAGTGGGAGAGGGAGGGATGGAGGCGTGCCCGA
AGTTCCATCAATCCAAGAATTCGCGTGGGGAATTACTGTGTGGTGAACAT
TGTCGTCTGACGGGAGCCGTCTATGGCGAGGTGTCAAGGAGAGGGGGGAA
GGCGGCAAAAGGGGCGGGGGGATTAAAAAAAGGGAAGAGAACGGCGAAAA
AAAAAGTCTGGGGTTGAGATGAGTAGGCACATACATACAAACAGGGCGAA
ACGGAAAGAGTCGGAGGACGGGAAGGAGGAAGAGGGGAATAGCGAAAGGC
GTAGAGCAAGCTTGACGAGGAAAACTACCTAGTGTAAGAAAGTAATAGAC
ATAATTGTTGTGGATGTAAGTGGTAACGACCTAGTTCAAGATCGAGTCAA
AACGAGAAAGAAGAAGAAGGAAGAAAAGGGAAGGAAAAGAAAAGACTGGA
AATTGAAGCCTATATTTACAACTTAAAATTGAGGAAGACGACGAGTCGAA
GGCAAGACACTCACAATGTAAGAGAAACGAAGAAATAAGAAATGGGAGAG
CAGCTTAAAATGAAGAATGAAGAGTAAAGCAGGCGTGTTGA
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Coding sequence (CDS) from alignment at scaffold_8:237049..238339+

>mRNA_3859 ID=mRNA_3859|Name=jgi.p|Nanoce1779_2|585634|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_8:237049..238339+ (Nannochloropsis oceanica)
ATGCAGCTGGCGCGGCATAGAGGAGGAGGAGGGGGGGAGGAGGAGATGGA
GGAAGGGGAGAAGGGCACGGGACAGAGCGGCCGTGCCCTTCGTATGCGCC
GCGTGAAATACTACGATTGCGAAGATGACAAAGGCGAGGAAGAGGAAGAG
GAAGAGGGAGGGGTGGAGGAAGGGCTCACCAAGACGAGCCATTCTAGCAC
CACCACTTCCACCTTCCCATCCTTCTCGTCTTCTTCCTCCTCTTCCCCCT
CCTCCTTCTTCTCCTGCGCTTCCTCCTCCACTGCTAACACCACTCTCTTC
CCTTACCACTACCCCGGCCGTCCGGCGCCCGTTGGAAAGGAGCTTCCCGA
TCGAGGGAGGCACAAGTGCCGTGTTCCAGGGTGCTCAGATGATTACCGGT
GGCCCGACTACAAGTGCAAGGCGCACGGTGGAGGCCGCTGTCAATTTATG
TGGTGGAGGAGGGAAGGAGTGGGAGAGGGAGGGATGGAGGCGTGCCCGAA
GTTCCATCAATCCAAGAATTCGCGTGGGGAATTACTGTGTGGTGAACATT
GTCGTCTGACGGGAGCCGTCTATGGCGAGGTGTCAAGGAGAGGGGGGAAG
GCGGCAAAAGGGGCGGGGGGATTAAAAAAAGGGAAGAGAACGGCGAAAAA
AAAAGTCTGGGGTTGA
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Synonyms
Publications