|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 585719 |
| Track | FilteredModels2 |
| ProteinId | 585633 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:235524..237204 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3858 ID=mRNA_3858|Name=jgi.p|Nanoce1779_2|585633|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
CTTCGAGGTCCGCCTCGTCAAAAACAAAGTTACTTGACCCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCATACTCCTCCGCCACCAA
GGGAGGCAACGATTGGAGCGAGACGCCTCGGCTAGGGAGGGCGGGGGGAA
GGCCAAGGGGGAAGACGGGGTGAAGGACGATACGCAATCCGTTGTTTAAT
GCCTCTTCAACCCAGTGCTTGTTGATGGTGGAATAGGAGGAGGAGAAGGG
AGGGGAGGAGGGGGACAGGAGGTAGGAAAGGAGAAAGTCGTACACGACCG
TCAGCCCTCCCCCAGTCCCTCCCTCCCTGCCTGCCTCCTGTAAGACTTCT
TCTTCTTGAGTGAAGGAGGGGAGGGAGAAGTATTCGCGCCAGAAGGAAGG
AGGGAGGATGCGAGCCCTCAGGAGGTCCAGCAGAGAGGGGAGGGGGCAGG
AAGAGGGGGAGGACGTTGCAAACGATGCCACCAGGACTTCAAGGCTGGTA
GCAGGGCGGAGGGAGGGTGAGGGGAGGGTGAGAAGTAGCACCGCTCCTCC
TCCGCTTCCTTCCCCTCCTCCTCTATTGTAGAACGACAGGGCCGAGGCAG
GGAGGGAGGGAAGGAGGGCGGCAATGTGGGTATCGAGGGAGGAAGGCGCG
TCGTTGACTGCAGCGGAGAACGAGGGGAAGGCATCAGCAGGCAAACCCCA
GGCAGCCCATAACACCGGGTCGCTTGCAAGAGGGCCGATGAAGAGCTTCA
AGTTTCGTGGGGAGGCAGGGAGGGAGGCGGGGACGGTGGTGTCATCGAGG
AAGGTGACGAACACGTAGGGGGGGAGCGAGGGAGCGAGAAAAGGGTGGGC
GCCATGTTCTTGCGTGAAAGTGGCTGCAAGCGTGTTGGTAGCCGAGGCTA
ATGCGGGCAACTGTCTGGCCGCTACTTCCTCTACCCCTTCCTCCCCCTCT
TCATCCTTTTCCTCATCACTTCCCATACGGTCAAAGGGGGAGAGAGGCAA
GAAGGACATGCAACTACTGCTCCTTGCAAACATATTTGGAGTCAGAGTCC
CTTCCCCTTTGCCTTCTTCCACTTCCGCTGACACCACCGAGCCAAGGGGG
GGGAAAGCAGTGGCTCCAGTAACAACAGTCGCAGCAGCTGCAGCAGCTGG
AGCTCCAGTAACAGCAGCAGCAGTCGCAGCAGCGCCACAATTCGGCGACA
CCAGCGACGACACCGATGACGACCGAGACCGCAAGCCCTCGTTCAGAAAA
TCAGGAAACGGGTCTTCAACGTCCCCATTCTGGCCCTCCTCCTGCTGCTC
CTGCTGGCGTCGTTGTAAGGCGGTCAAGGCATTTACCAATGCCGTCACTG
TCACTACAGGCCCCGTGGAGTCCAAAGGAGGGGTTCGTGTCTCAACCCCC
ACCAACGCTTGTGGGTCCCAGGCTGGCACCATCTCCTCCCATGTCGGAAA
TGATGGGGTAATACCTTGTCCTCCACCACCACCGCCGCCACTGCAGCTGT
GGCTGCAGCTGCTTGTGCTGGTGCCGCGGTGAGCGCCGCCGCTACTGCCG
CCGCTGACGGTCTTGAGTTTCTTCTCCATGCGACGTCGCGAGGCCGAGGA
CAGCGACGAGCTCGATGTGGCGACGAACATTGGTGCTTGAATGAAGGGGG
TCGAAACCCTCGCCCCTCCGTGTGTGACTGT back to topprotein sequence of jgi.p|Nanoce1779_2|585633 >mRNA_3858-protein ID=mRNA_3858-protein|Name=jgi.p|Nanoce1779_2|585633|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MQLLLLANIFGVRVPSPLPSSTSADTTEPRGGKAVAPVTTVAAAAAAGAP
VTAAAVAAAPQFGDTSDDTDDDRDRKPSFRKSGNGSSTSPFWPSSCCSCW
RRCKAVKAFTNAVTVTTGPVESKGGVRVSTPTNACGSQAGTISSHVGNDG
VIPCPPPPPPPLQLWLQLLVLVPR* back to topmRNA from alignment at scaffold_8:235524..237204- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3858 ID=mRNA_3858|Name=jgi.p|Nanoce1779_2|585633|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at scaffold_8:235524..237204- (Nannochloropsis oceanica)
CTTCGAGGTCCGCCTCGTCAAAAACAAAGTTACTTGACCCCCTCCCTCCC
TCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCATACTCCTCCGCCACCAA
GGGAGGCAACGATTGGAGCGAGACGCCTCGGCTAGGGAGGGCGGGGGGAA
GGCCAAGGGGGAAGACGGGGTGAAGGACGATACGCAATCCGTTGTTTAAT
GCCTCTTCAACCCAGTGCTTGTTGATGGTGGAATAGGAGGAGGAGAAGGG
AGGGGAGGAGGGGGACAGGAGGTAGGAAAGGAGAAAGTCGTACACGACCG
TCAGCCCTCCCCCAGTCCCTCCCTCCCTGCCTGCCTCCTGTAAGACTTCT
TCTTCTTGAGTGAAGGAGGGGAGGGAGAAGTATTCGCGCCAGAAGGAAGG
AGGGAGGATGCGAGCCCTCAGGAGGTCCAGCAGAGAGGGGAGGGGGCAGG
AAGAGGGGGAGGACGTTGCAAACGATGCCACCAGGACTTCAAGGCTGGTA
GCAGGGCGGAGGGAGGGTGAGGGGAGGGTGAGAAGTAGCACCGCTCCTCC
TCCGCTTCCTTCCCCTCCTCCTCTATTGTAGAACGACAGGGCCGAGGCAG
GGAGGGAGGGAAGGAGGGCGGCAATGTGGGTATCGAGGGAGGAAGGCGCG
TCGTTGACTGCAGCGGAGAACGAGGGGAAGGCATCAGCAGGCAAACCCCA
GGCAGCCCATAACACCGGGTCGCTTGCAAGAGGGCCGATGAAGAGCTTCA
AGTTTCGTGGGGAGGCAGGGAGGGAGGCGGGGACGGTGGTGTCATCGAGG
AAGGTGACGAACACGTAGGGGGGGAGCGAGGGAGCGAGAAAAGGGTGGGC
GCCATGTTCTTGCGTGAAAGTGGCTGCAAGCGTGTTGGTAGCCGAGGCTA
ATGCGGGCAACTGTCTGGCCGCTACTTCCTCTACCCCTTCCTCCCCCTCT
TCATCCTTTTCCTCATCACTTCCCATACGGTCAAAGGGGGAGAGAGGCAA
GAAGGACATGCAACTACTGCTCCTTGCAAACATATTTGGAGTCAGAGTCC
CTTCCCCTTTGCCTTCTTCCACTTCCGCTGACACCACCGAGCCAAGGGGG
GGGAAAGCAGTGGCTCCAGTAACAACAGTCGCAGCAGCTGCAGCAGCTGG
AGCTCCAGTAACAGCAGCAGCAGTCGCAGCAGCGCCACAATTCGGCGACA
CCAGCGACGACACCGATGACGACCGAGACCGCAAGCCCTCGTTCAGAAAA
TCAGGAAACGGGTCTTCAACGTCCCCATTCTGGCCCTCCTCCTGCTGCTC
CTGCTGGCGTCGTTGTAAGGCGGTCAAGGCATTTACCAATGCCGTCACTG
TCACTACAGGCCCCGTGGAGTCCAAAGGAGGGGTTCGTGTCTCAACCCCC
ACCAACGCTTGTGGGTCCCAGGCTGGCACCATCTCCTCCCATGTCGGAAA
TGATGGGGTAATACCTTGTCCTCCACCACCACCGCCGCCACTGCAGCTGT
GGCTGCAGCTGCTTGTGCTGGTGCCGCGGTGAGCGCCGCCGCTACTGCCG
CCGCTGACGGTCTTGAGTTTCTTCTCCATGCGACGTCGCGAGGCCGAGGA
CAGCGACGAGCTCGATGTGGCGACGAACATTGGTGCTTGAATGAAGGGGG
TCGAAACCCTCGCCCCTCCGTGTGTGACTGT back to topCoding sequence (CDS) from alignment at scaffold_8:235524..237204- >mRNA_3858 ID=mRNA_3858|Name=jgi.p|Nanoce1779_2|585633|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_8:235524..237204- (Nannochloropsis oceanica)
ATGCAACTACTGCTCCTTGCAAACATATTTGGAGTCAGAGTCCCTTCCCC
TTTGCCTTCTTCCACTTCCGCTGACACCACCGAGCCAAGGGGGGGGAAAG
CAGTGGCTCCAGTAACAACAGTCGCAGCAGCTGCAGCAGCTGGAGCTCCA
GTAACAGCAGCAGCAGTCGCAGCAGCGCCACAATTCGGCGACACCAGCGA
CGACACCGATGACGACCGAGACCGCAAGCCCTCGTTCAGAAAATCAGGAA
ACGGGTCTTCAACGTCCCCATTCTGGCCCTCCTCCTGCTGCTCCTGCTGG
CGTCGTTGTAAGGCGGTCAAGGCATTTACCAATGCCGTCACTGTCACTAC
AGGCCCCGTGGAGTCCAAAGGAGGGGTTCGTGTCTCAACCCCCACCAACG
CTTGTGGGTCCCAGGCTGGCACCATCTCCTCCCATGTCGGAAATGATGGG
GTAATACCTTGTCCTCCACCACCACCGCCGCCACTGCAGCTGTGGCTGCA
GCTGCTTGTGCTGGTGCCGCGGTGA back to top
|