jgi.p|Nanoce1779_2|585628, mRNA_3857 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585628
Unique NamemRNA_3857
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length919
Alignment locationscaffold_8:233949..234867 -

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Properties
Property NameValue
TranscriptId585714
TrackFilteredModels2
ProteinId585628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:233949..234867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585628gene_3857Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585628mRNA_3857-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3857CDS_3857Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3857 ID=mRNA_3857|Name=jgi.p|Nanoce1779_2|585628|organism=Nannochloropsis oceanica|type=mRNA|length=919bp
CAGGCGGCAACAAATGCGCCTACTCTTCACCAACCCAGTCACCTTGCTTT
CGCTCGGCCTTGTCTTGACCACCACCAGCCTCAGCATGCGTCGTGCCACC
GCATTCTCCTTTCCGCACCGCGTTTCCCAAGCTACTTCCATGTCCTCCTC
CTCCTCGCCGACTCCTCCTCCTTCCAACCAACCCACTCGCCGCGGCTTCC
TGGGAAAATGGCTCGGAGGCATAGGGCTTGGTGTGGCAGCCAGCGCCGCG
GTCGGCGCATTTGTTTTTCCCAGTCGTCCGCATGATGCAACAGCGGCAGC
AGCTGCAGCAGCAGGAGGAAGCGCCACCGCTGTTCCGAAGAGCGGGATGG
GTATTGATTTGACGCCTCTTTCGACCACCGACGCCTTGAAAGCTGCCGAT
GAGCTCAAGTTAGGGAGGATGGAAAGGAGGATACTCTTCGAGGCGGGAAC
TGAAATGCCTGGTACCGGAGTGACGGCTAATGGCTTCAAGGGCAGCACCA
AGGAGGATGGCGTATGGGTCAGCGCCGTGAGCGGCGTCCCTCTCTTTGAT
TCTCAGGCCAAGTACAACAGTGGGACAGGGTGGCCCTCCTTTTTCCAGGC
TGCGGACCCAGCCCATGTGATTGAGAGGCTGGATCCGAAAGATGGGGGAA
AGCCCCGGTTTCTGCAGCGGGTGGAGGTGTTGGACCGTAAAAGTGGCACG
CACCTTGGGCATGTCTTCGATGACGGGCCCGCTCCGACGGGGAAGCGGTA
TTGCATGAACGCGGGGGCGTTGCGGTTCATCCCACGGGGGGAGGTGGAGG
GGTGGGTAGCGAAGTTGCCCAAAAGCAAGTAGAGAGGAAGGTAGTAGGGA
AGTGAATTAAGGAGAGAAGCGGAGGGGGTTGTAGAATCAGATTCAAATAA
ATTAAGAGTTTGTTCGTGT
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protein sequence of jgi.p|Nanoce1779_2|585628

>mRNA_3857-protein ID=mRNA_3857-protein|Name=jgi.p|Nanoce1779_2|585628|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MRLLFTNPVTLLSLGLVLTTTSLSMRRATAFSFPHRVSQATSMSSSSSPT
PPPSNQPTRRGFLGKWLGGIGLGVAASAAVGAFVFPSRPHDATAAAAAAA
GGSATAVPKSGMGIDLTPLSTTDALKAADELKLGRMERRILFEAGTEMPG
TGVTANGFKGSTKEDGVWVSAVSGVPLFDSQAKYNSGTGWPSFFQAADPA
HVIERLDPKDGGKPRFLQRVEVLDRKSGTHLGHVFDDGPAPTGKRYCMNA
GALRFIPRGEVEGWVAKLPKSK*
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mRNA from alignment at scaffold_8:233949..234867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3857 ID=mRNA_3857|Name=jgi.p|Nanoce1779_2|585628|organism=Nannochloropsis oceanica|type=mRNA|length=919bp|location=Sequence derived from alignment at scaffold_8:233949..234867- (Nannochloropsis oceanica)
CAGGCGGCAACAAATGCGCCTACTCTTCACCAACCCAGTCACCTTGCTTT
CGCTCGGCCTTGTCTTGACCACCACCAGCCTCAGCATGCGTCGTGCCACC
GCATTCTCCTTTCCGCACCGCGTTTCCCAAGCTACTTCCATGTCCTCCTC
CTCCTCGCCGACTCCTCCTCCTTCCAACCAACCCACTCGCCGCGGCTTCC
TGGGAAAATGGCTCGGAGGCATAGGGCTTGGTGTGGCAGCCAGCGCCGCG
GTCGGCGCATTTGTTTTTCCCAGTCGTCCGCATGATGCAACAGCGGCAGC
AGCTGCAGCAGCAGGAGGAAGCGCCACCGCTGTTCCGAAGAGCGGGATGG
GTATTGATTTGACGCCTCTTTCGACCACCGACGCCTTGAAAGCTGCCGAT
GAGCTCAAGTTAGGGAGGATGGAAAGGAGGATACTCTTCGAGGCGGGAAC
TGAAATGCCTGGTACCGGAGTGACGGCTAATGGCTTCAAGGGCAGCACCA
AGGAGGATGGCGTATGGGTCAGCGCCGTGAGCGGCGTCCCTCTCTTTGAT
TCTCAGGCCAAGTACAACAGTGGGACAGGGTGGCCCTCCTTTTTCCAGGC
TGCGGACCCAGCCCATGTGATTGAGAGGCTGGATCCGAAAGATGGGGGAA
AGCCCCGGTTTCTGCAGCGGGTGGAGGTGTTGGACCGTAAAAGTGGCACG
CACCTTGGGCATGTCTTCGATGACGGGCCCGCTCCGACGGGGAAGCGGTA
TTGCATGAACGCGGGGGCGTTGCGGTTCATCCCACGGGGGGAGGTGGAGG
GGTGGGTAGCGAAGTTGCCCAAAAGCAAGTAGAGAGGAAGGTAGTAGGGA
AGTGAATTAAGGAGAGAAGCGGAGGGGGTTGTAGAATCAGATTCAAATAA
ATTAAGAGTTTGTTCGTGT
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Coding sequence (CDS) from alignment at scaffold_8:233949..234867-

>mRNA_3857 ID=mRNA_3857|Name=jgi.p|Nanoce1779_2|585628|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_8:233949..234867- (Nannochloropsis oceanica)
ATGCGCCTACTCTTCACCAACCCAGTCACCTTGCTTTCGCTCGGCCTTGT
CTTGACCACCACCAGCCTCAGCATGCGTCGTGCCACCGCATTCTCCTTTC
CGCACCGCGTTTCCCAAGCTACTTCCATGTCCTCCTCCTCCTCGCCGACT
CCTCCTCCTTCCAACCAACCCACTCGCCGCGGCTTCCTGGGAAAATGGCT
CGGAGGCATAGGGCTTGGTGTGGCAGCCAGCGCCGCGGTCGGCGCATTTG
TTTTTCCCAGTCGTCCGCATGATGCAACAGCGGCAGCAGCTGCAGCAGCA
GGAGGAAGCGCCACCGCTGTTCCGAAGAGCGGGATGGGTATTGATTTGAC
GCCTCTTTCGACCACCGACGCCTTGAAAGCTGCCGATGAGCTCAAGTTAG
GGAGGATGGAAAGGAGGATACTCTTCGAGGCGGGAACTGAAATGCCTGGT
ACCGGAGTGACGGCTAATGGCTTCAAGGGCAGCACCAAGGAGGATGGCGT
ATGGGTCAGCGCCGTGAGCGGCGTCCCTCTCTTTGATTCTCAGGCCAAGT
ACAACAGTGGGACAGGGTGGCCCTCCTTTTTCCAGGCTGCGGACCCAGCC
CATGTGATTGAGAGGCTGGATCCGAAAGATGGGGGAAAGCCCCGGTTTCT
GCAGCGGGTGGAGGTGTTGGACCGTAAAAGTGGCACGCACCTTGGGCATG
TCTTCGATGACGGGCCCGCTCCGACGGGGAAGCGGTATTGCATGAACGCG
GGGGCGTTGCGGTTCATCCCACGGGGGGAGGTGGAGGGGTGGGTAGCGAA
GTTGCCCAAAAGCAAGTAG
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Synonyms
Publications