jgi.p|Nanoce1779_2|585612, mRNA_3854 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585612
Unique Name	mRNA_3854
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1124
Alignment location	scaffold_8:226431..227554 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585698
Track	FilteredModels2
ProteinId	585612

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:226431..227554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585612	gene_3854	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585612	mRNA_3854-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3854	CDS_3854	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:226431..227554+
coding sequence from alignment at scaffold_8:226431..227554+

mRNA sequence

>mRNA_3854 ID=mRNA_3854|Name=jgi.p|Nanoce1779_2|585612|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp
CCGCTTCTTTCATCCTTTTTGATTTCTTCGTGGTACCCCCCAAACTCAGT
ACCTCCCCTACCACAACCACCATCTCGAAGCCTCAAAGCCGATAATGGTC
GCCCTCAAAAATATCACCCAAGATCGGGCCGGGCCTATCACTGTGGATAT
TGTTCTGCTGGATAATGAGGTAGAGCTGGAGATTCAGACCCGCTCCCATC
TCCTGAAGGACGACGATGCCGGCAAGGAGAGCCTCGCCTTGTCTTGTCTC
ACCCCTGCCACCCGCGAGGACCCCGACGTGCTGCCTGAGGAACGGTGGAA
TGAGGCCTGGCAAAGTCACCTAGATCACATCAAGGTATACATTACAGGGA
AAAGCGTGACTTGATTGATGAATCCATGTGCCCTGCCATTCCCACACACA
CAAAGTTGACCAACTTAAAACCGGCTCAAACTCATCTGTACTACATAGAA
ATCCTACTCCGGCGCTGACGGCCTTCCAGACCACGAGTTGCGCAATTTTT
TGATCTACATGCAAGGAGATCCTAGCAAGGCAGGTGAACGTATCGACAGA
TGCCTTTCCTGGCGCCGCACCCACCTTCCCATTGACCGCTCAACCATTCA
GCTCGCATTGAATCAGCGCCTCTTCTTTTTTCAAGGCAAGGACAGGGCGT
GCCGTCCTGTTGGATACTTTCGCCTGCAGGGCCATGATCGCAAGAAGCGT
AATTTGGAGCAGTATGTGCGTGCGGTGGTGTATGTGTCCGAGGCACTGGT
GAAGCGTATGGGAGGGAGCGACTATCGTGTCACCCTGGTCATCGATCGCC
GCGGGGCCAATTTATTTAACCAAGACTTGGAGCTGTACAAAGCTTTTTTC
AAAACCTTTGGGGAACTATATCCGATGAAGCTCTTCCGTGTCATTCTGTA
CCCGGCCACCACCATGACGCGTGTGCTCTGGTCGATGCTCCGCCCTTTCG
TCCATAGCCATGTGCAGCGACGCTTGGCCTTGGTATCAGACCTGGCAGAT
TTTGCTCCCTACATAGATAAGGATCAACTGTTGTTGTCACTGGGTGGAGC
ATTGCCGGACATGGACGAGGATGATGCATTGGCGGTGGAGGAAGTGAAGG
AGTCTTAGGACACGGGGGAGCTGT

protein sequence of jgi.p|Nanoce1779_2|585612

>mRNA_3854-protein ID=mRNA_3854-protein|Name=jgi.p|Nanoce1779_2|585612|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MQGDPSKAGERIDRCLSWRRTHLPIDRSTIQLALNQRLFFFQGKDRACRP
VGYFRLQGHDRKKRNLEQYVRAVVYVSEALVKRMGGSDYRVTLVIDRRGA
NLFNQDLELYKAFFKTFGELYPMKLFRVILYPATTMTRVLWSMLRPFVHS
HVQRRLALVSDLADFAPYIDKDQLLLSLGGALPDMDEDDALAVEEVKES*

mRNA from alignment at scaffold_8:226431..227554+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3854 ID=mRNA_3854|Name=jgi.p|Nanoce1779_2|585612|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_8:226431..227554+ (Nannochloropsis oceanica)
CCGCTTCTTTCATCCTTTTTGATTTCTTCGTGGTACCCCCCAAACTCAGT
ACCTCCCCTACCACAACCACCATCTCGAAGCCTCAAAGCCGATAATGGTC
GCCCTCAAAAATATCACCCAAGATCGGGCCGGGCCTATCACTGTGGATAT
TGTTCTGCTGGATAATGAGGTAGAGCTGGAGATTCAGACCCGCTCCCATC
TCCTGAAGGACGACGATGCCGGCAAGGAGAGCCTCGCCTTGTCTTGTCTC
ACCCCTGCCACCCGCGAGGACCCCGACGTGCTGCCTGAGGAACGGTGGAA
TGAGGCCTGGCAAAGTCACCTAGATCACATCAAGGTATACATTACAGGGA
AAAGCGTGACTTGATTGATGAATCCATGTGCCCTGCCATTCCCACACACA
CAAAGTTGACCAACTTAAAACCGGCTCAAACTCATCTGTACTACATAGAA
ATCCTACTCCGGCGCTGACGGCCTTCCAGACCACGAGTTGCGCAATTTTT
TGATCTACATGCAAGGAGATCCTAGCAAGGCAGGTGAACGTATCGACAGA
TGCCTTTCCTGGCGCCGCACCCACCTTCCCATTGACCGCTCAACCATTCA
GCTCGCATTGAATCAGCGCCTCTTCTTTTTTCAAGGCAAGGACAGGGCGT
GCCGTCCTGTTGGATACTTTCGCCTGCAGGGCCATGATCGCAAGAAGCGT
AATTTGGAGCAGTATGTGCGTGCGGTGGTGTATGTGTCCGAGGCACTGGT
GAAGCGTATGGGAGGGAGCGACTATCGTGTCACCCTGGTCATCGATCGCC
GCGGGGCCAATTTATTTAACCAAGACTTGGAGCTGTACAAAGCTTTTTTC
AAAACCTTTGGGGAACTATATCCGATGAAGCTCTTCCGTGTCATTCTGTA
CCCGGCCACCACCATGACGCGTGTGCTCTGGTCGATGCTCCGCCCTTTCG
TCCATAGCCATGTGCAGCGACGCTTGGCCTTGGTATCAGACCTGGCAGAT
TTTGCTCCCTACATAGATAAGGATCAACTGTTGTTGTCACTGGGTGGAGC
ATTGCCGGACATGGACGAGGATGATGCATTGGCGGTGGAGGAAGTGAAGG
AGTCTTAGGACACGGGGGAGCTGT

Coding sequence (CDS) from alignment at scaffold_8:226431..227554+

>mRNA_3854 ID=mRNA_3854|Name=jgi.p|Nanoce1779_2|585612|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_8:226431..227554+ (Nannochloropsis oceanica)
ATGCAAGGAGATCCTAGCAAGGCAGGTGAACGTATCGACAGATGCCTTTC
CTGGCGCCGCACCCACCTTCCCATTGACCGCTCAACCATTCAGCTCGCAT
TGAATCAGCGCCTCTTCTTTTTTCAAGGCAAGGACAGGGCGTGCCGTCCT
GTTGGATACTTTCGCCTGCAGGGCCATGATCGCAAGAAGCGTAATTTGGA
GCAGTATGTGCGTGCGGTGGTGTATGTGTCCGAGGCACTGGTGAAGCGTA
TGGGAGGGAGCGACTATCGTGTCACCCTGGTCATCGATCGCCGCGGGGCC
AATTTATTTAACCAAGACTTGGAGCTGTACAAAGCTTTTTTCAAAACCTT
TGGGGAACTATATCCGATGAAGCTCTTCCGTGTCATTCTGTACCCGGCCA
CCACCATGACGCGTGTGCTCTGGTCGATGCTCCGCCCTTTCGTCCATAGC
CATGTGCAGCGACGCTTGGCCTTGGTATCAGACCTGGCAGATTTTGCTCC
CTACATAGATAAGGATCAACTGTTGTTGTCACTGGGTGGAGCATTGCCGG
ACATGGACGAGGATGATGCATTGGCGGTGGAGGAAGTGAAGGAGTCTTAG

Synonyms

Publications