jgi.p|Nanoce1779_2|577170, mRNA_385 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577170
Unique NamemRNA_385
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1251
Alignment locationscaffold_3:955669..956919 -

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Properties
Property NameValue
TranscriptId577256
TrackFilteredModels2
ProteinId577170
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:955669..956919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577170gene_385Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577170mRNA_385-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_385CDS_385Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_385 ID=mRNA_385|Name=jgi.p|Nanoce1779_2|577170|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp
CAGCCTTTTTATCTTTCAATTCATAGGCCCTTATCCGGGCATATTTTTGT
GCGGCTACAACGCGAGCTCCCAAAGTATTCTCATCGTCATGCTTAGACCA
AGACCAGGGGAGTTTGTCTCCCTCCTCCGCCTTTGCCTAATTCTTGTGCT
GCTACTCCTCCTCCAAGGCTACGGCGGTGCGCAATTTTACATCGTGGTAC
AGCCGGTACGTGTATGGGATAGGGCTGTGTGTGAGCGAATGATGAAACAA
GGCGCTGGAAGCAGACATTTTCGCGCTATTCCACCTTGTATTCATCAAAC
ACTATCAGTCACCTCCATCCTCGCAAAATTCAGGCTATCGGAGTGTTAAT
AACTGGCCCAGCAAGGATCGAACGGCATGCACTCCCGTGCCCTTTCCCAC
TTAACACACTCATTCATCCAAATAACCCCACACCAACCCCTACCAGCACG
CCGGCGAGCAATGCTTCCTAATCGAGCAACCCCAAGGCACCCTCGTCACC
GTCGAATACGAAAATCCCGCCTATGCCACCCAAAATCTTAACCTCGTCAT
TAGCCTTCGCTCGGGACCGGGCACCACCGGCAGTAACAGCAAGATGATCC
AACAATTGCAAATGGACGAAGAAAAGGGCCATATTAAATTCGCCACGGTC
AAGGATGGCTTCCACTCGTTGTGTATTGTCCCATCCAAGGTGACAAAACC
CACCAAGATTGGCTTAGACGTGACGTATGGCAAGCCAAAAGCCTTCTATA
GTGACCTTGCTAAAGAAGCACACATCGATTTACTCGAAGCAAGCATCATG
CGTCTCAATGCTCAAATGGGCCAAATTTTGAATGAAGCCGATTATATGAA
GGATAAGGAGGTGTTGTTCCACCAGCAGTGCGAGAGGACAAACAGTGCTG
CGAGATGGTGGCCGATACTTCAGGTGGCCATCTTGTTGGTCACGGGCGTG
TTGCAAGTGAATAATTTGAAGCAGTTTTTCAAGGCACGGAAGCTTGTCTA
GAGGGAGGGAGGAAGGAAGTGATGTATGTTTATGCGGATTGCGAGGATGA
AGGGAAAGAAACAAAATGGGGGAGCCTGAAGAGGGGGAAAGCGTGGAGGG
AAGACTGTGATAGGAGAGGGAGGCGAGGAAAGAGACACCGAGAGATAACA
AATCGAAAATCACACACAAAGAACGACCTAAGGGAAAACGACGGCACGCA
AACGTATAGATGCGATTATCAATATATATGCATATACGTGCTAGACACAG
C
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protein sequence of jgi.p|Nanoce1779_2|577170

>mRNA_385-protein ID=mRNA_385-protein|Name=jgi.p|Nanoce1779_2|577170|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MIQQLQMDEEKGHIKFATVKDGFHSLCIVPSKVTKPTKIGLDVTYGKPKA
FYSDLAKEAHIDLLEASIMRLNAQMGQILNEADYMKDKEVLFHQQCERTN
SAARWWPILQVAILLVTGVLQVNNLKQFFKARKLV*
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mRNA from alignment at scaffold_3:955669..956919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_385 ID=mRNA_385|Name=jgi.p|Nanoce1779_2|577170|organism=Nannochloropsis oceanica|type=mRNA|length=1251bp|location=Sequence derived from alignment at scaffold_3:955669..956919- (Nannochloropsis oceanica)
CAGCCTTTTTATCTTTCAATTCATAGGCCCTTATCCGGGCATATTTTTGT
GCGGCTACAACGCGAGCTCCCAAAGTATTCTCATCGTCATGCTTAGACCA
AGACCAGGGGAGTTTGTCTCCCTCCTCCGCCTTTGCCTAATTCTTGTGCT
GCTACTCCTCCTCCAAGGCTACGGCGGTGCGCAATTTTACATCGTGGTAC
AGCCGGTACGTGTATGGGATAGGGCTGTGTGTGAGCGAATGATGAAACAA
GGCGCTGGAAGCAGACATTTTCGCGCTATTCCACCTTGTATTCATCAAAC
ACTATCAGTCACCTCCATCCTCGCAAAATTCAGGCTATCGGAGTGTTAAT
AACTGGCCCAGCAAGGATCGAACGGCATGCACTCCCGTGCCCTTTCCCAC
TTAACACACTCATTCATCCAAATAACCCCACACCAACCCCTACCAGCACG
CCGGCGAGCAATGCTTCCTAATCGAGCAACCCCAAGGCACCCTCGTCACC
GTCGAATACGAAAATCCCGCCTATGCCACCCAAAATCTTAACCTCGTCAT
TAGCCTTCGCTCGGGACCGGGCACCACCGGCAGTAACAGCAAGATGATCC
AACAATTGCAAATGGACGAAGAAAAGGGCCATATTAAATTCGCCACGGTC
AAGGATGGCTTCCACTCGTTGTGTATTGTCCCATCCAAGGTGACAAAACC
CACCAAGATTGGCTTAGACGTGACGTATGGCAAGCCAAAAGCCTTCTATA
GTGACCTTGCTAAAGAAGCACACATCGATTTACTCGAAGCAAGCATCATG
CGTCTCAATGCTCAAATGGGCCAAATTTTGAATGAAGCCGATTATATGAA
GGATAAGGAGGTGTTGTTCCACCAGCAGTGCGAGAGGACAAACAGTGCTG
CGAGATGGTGGCCGATACTTCAGGTGGCCATCTTGTTGGTCACGGGCGTG
TTGCAAGTGAATAATTTGAAGCAGTTTTTCAAGGCACGGAAGCTTGTCTA
GAGGGAGGGAGGAAGGAAGTGATGTATGTTTATGCGGATTGCGAGGATGA
AGGGAAAGAAACAAAATGGGGGAGCCTGAAGAGGGGGAAAGCGTGGAGGG
AAGACTGTGATAGGAGAGGGAGGCGAGGAAAGAGACACCGAGAGATAACA
AATCGAAAATCACACACAAAGAACGACCTAAGGGAAAACGACGGCACGCA
AACGTATAGATGCGATTATCAATATATATGCATATACGTGCTAGACACAG
C
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Coding sequence (CDS) from alignment at scaffold_3:955669..956919-

>mRNA_385 ID=mRNA_385|Name=jgi.p|Nanoce1779_2|577170|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_3:955669..956919- (Nannochloropsis oceanica)
ATGATCCAACAATTGCAAATGGACGAAGAAAAGGGCCATATTAAATTCGC
CACGGTCAAGGATGGCTTCCACTCGTTGTGTATTGTCCCATCCAAGGTGA
CAAAACCCACCAAGATTGGCTTAGACGTGACGTATGGCAAGCCAAAAGCC
TTCTATAGTGACCTTGCTAAAGAAGCACACATCGATTTACTCGAAGCAAG
CATCATGCGTCTCAATGCTCAAATGGGCCAAATTTTGAATGAAGCCGATT
ATATGAAGGATAAGGAGGTGTTGTTCCACCAGCAGTGCGAGAGGACAAAC
AGTGCTGCGAGATGGTGGCCGATACTTCAGGTGGCCATCTTGTTGGTCAC
GGGCGTGTTGCAAGTGAATAATTTGAAGCAGTTTTTCAAGGCACGGAAGC
TTGTCTAG
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Synonyms
Publications