|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 585652 |
| Track | FilteredModels2 |
| ProteinId | 585566 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:198189..200191 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3848 ID=mRNA_3848|Name=jgi.p|Nanoce1779_2|585566|organism=Nannochloropsis oceanica|type=mRNA|length=1046bp
AGACAGCAACACACACGTTGTATTCCTTTCCCCAAAATATGCGCTTTCTT
GGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGCCATGGGCCAGGC
CTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGCGCATGCTTCAGG
GAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTTATCAGCGACCAT
GAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAAGAGCGCCAAACG
CCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACATGAGCTTGGGCA
ATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACTTACGCGATGTTG
CAAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGC
CAAGGCCAAAGAGGACTTCACGAAAACAGATAGCATGGCCATCCTTGAGA
CCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATGAAAGACATGGCG
AACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGCGAACTCAATGCA
GCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCTTGACGACGGAGG
AACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGAATGGCGACTCTGCC
GCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTTGTGGAATGGAGC
TATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCAGC
TCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTCGACCTCATCACG
GGCGACGACCCTCTTGTGAAAAAGGTGCTCACGGATCCCAGCATGCTCTT
CGGAGTCGGGGCTTCCATGGGCGACCAGTAAAGAAGAAGGAGAACCGAGG
GAAGCGACAGGACATAAAAGGGGAGACAGGGGGAAGGGCTAAGGCGGGAT
GCGAGAAAGGTTTATTGACAATTCTGTTACCGGTGATCGAAATCCACAAG
CGTTTTGTGATAAAGAAGGAAGAAATAACGTGTGTAAAGATTGAAT back to topprotein sequence of jgi.p|Nanoce1779_2|585566 >mRNA_3848-protein ID=mRNA_3848-protein|Name=jgi.p|Nanoce1779_2|585566|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MRFLGLRLAAVLVVATAMGQASDKNGGPLNRVKRMLQGDTTTTAATAKAF
ISDHEIQDSWATDPILKSAKRLMNGDHANLVVDMSLGNEVKEIFSDPDTT
YAMLQATPLFNVLPGVKALRAKAKEDFTKTDSMAILETYRKFVATAIKGM
KDMANPVALAETMQKVANSMQPSTLQADGTHRALTTEERRMTELVARVEN
GDSAAVDELQDNVADSLWNGAIDLSELKGKVPDIVEQLRQITMDEDPAFF
DLITGDDPLVKKVLTDPSMLFGVGASMGDQ* back to topmRNA from alignment at scaffold_8:198189..200191- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3848 ID=mRNA_3848|Name=jgi.p|Nanoce1779_2|585566|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at scaffold_8:198189..200191- (Nannochloropsis oceanica)
AGACAGCAACACACACGTTGTATTCCTTTCCCCAAAATATGCGCTTTCTT
GGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGCCATGGGCCAGGC
CTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGCGCATGCTTCAGG
GAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTTATCAGCGACCAT
GAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAAGAGCGCCAAACG
CCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACATGAGCTTGGGCA
ATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACTTACGCGATGTTG
CAAGGTAAGACAGAGGGAGAGACTGTGCTCATGGAACAGACGAAAAGGCA
ACGACCTGTCGCGCGTCACTCAGCATTTTCCCCGTTTCCCTGCGCCCGCC
CGCCCTTCCTCCCTCTTCCATCCTCTTCCTGCAGCCACACCCTTGTTCAA
TGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAAAGAGGACTTCA
CGAAAACAGATGTACGTATTACAAGAGAAAGCGAATCTAAGAAAAGTATG
CATTCCTTCCCCTCCACAGACCCTCGGCGTCCTTCTCTTCAAAAAGGGAG
AGAATCAAGCAGCTCTTGTATCCTTCCCTTGGAGAAGATCAAATGCTCGC
TTTTCGTATGTGCTTCCTTTTTTCCTTTGCCTCCATCCCTGACATCACGT
CTTTCTCATTCCATCACATACGCACTTCATCGAAATTATAGAGCATGGCC
ATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATGAA
AGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGCGA
ACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCTTG
ACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGGTATG
TTTCTGTCTTTGTGTGGCGATACGTCATCCCTTCATTGCGTTCCTTATCC
CTCGGCTGACATTTCTCATATGAATTTAACGTGTACCCCACCCACAGAAT
GGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTT
GTGGAATGGAGGTAAGCACACGATACTTTTCGCAATATGTGGGTGTGTGA
ATGGGGCGTTTATCCTCACCTACGTGACCTCTTTCATTCTGTATAGCTAT
TCCTGGGGGCTTTCGTATGCGATGAAATGAGTTGTGGGAAGGCTACATGC
TTGCGGATGAATGTCCTTTGCTATTCTTTCTCTGAAATGTCTGGTCTCAG
TCAACTTTCTACGTGATACTCCACTCCAACAACCACTCCCCGCCTCGTCT
AGTTTTTCCCCCCATCACACCTTCCTTGCGATAGCCACGGCTTTGTTCTA
ATCAATATCAAGCGTCATTTCTGCTGGGTGACTAAATTTCGTCACTCTGG
ATGACAAAGTTTCTCTCTCAATGATTCACCCTTTTCTTCCCCACTCTCTA
ACCCCCGCCCAGCTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGAC
ATCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTT
CGACCTCATCACGGGCGACGACCCTCTTGTGAAAAAGTACGTTCAAAGAG
AGAAAAGCAGAGAAGGGGAAGGGAGAAAAAGGCAAGCAGCACAGGCACTT
ACTTTGTATTTCTACACAACCATTACATAGGGTGCTCACGGATCCCAGCA
TGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAAAGAAGAAGGAGA
ACCGAGGGAAGCGACAGGACATAAAAGGGGAGACAGGGGGAAGGGCTAAG
GCGGGATGCGAGAAAGGTTTATTGACAATTCTGTTACCGGTGATCGAAAT
CCACAAGCGTTTTGTGATAAAGAAGGAAGAAATAACGTGTGTAAAGATTG
AAT back to topCoding sequence (CDS) from alignment at scaffold_8:198189..200191- >mRNA_3848 ID=mRNA_3848|Name=jgi.p|Nanoce1779_2|585566|organism=Nannochloropsis oceanica|type=CDS|length=5058bp|location=Sequence derived from alignment at scaffold_8:198189..200191- (Nannochloropsis oceanica)
GGTGCTCACGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCG
ACCAGTAACTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACATCG
TCGAGCAGCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTCGAC
CTCATCACGGGCGACGACCCTCTTGTGAAAAAAATGGCGACTCTGCCGCC
GTCGATGAACTTCAAGACAACGTGGCCGACAGCTTGTGGAATGGAGAGCA
TGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGC
ATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGT
CGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGG
CCTTGACGACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAG
CCACACCCTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAG
GCCAAAGAGGACTTCACGAAAACAGATATGCGCTTTCTTGGTCTTCGCCT
CGCCGCCGTGCTCGTGGTCGCCACTGCCATGGGCCAGGCCTCGGACAAGA
ACGGTGGCCCCTTGAATCGTGTCAAGCGCATGCTTCAGGGAGACACCACG
ACCACGGCGGCGACAGCAAAGGCCTTTATCAGCGACCATGAAATACAAGA
CTCGTGGGCCACTGATCCCATCCTCAAGAGCGCCAAACGCCTTATGAATG
GCGATCACGCCAACCTAGTCGTTGACATGAGCTTGGGCAATGAGGTGAAA
GAGATTTTCAGTGATCCGGACACCACTTACGCGATGTTGCAAGGGTGCTC
ACGGATCCCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTA
ACTATCGATCTCTCGGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCA
GCTCCGCCAAATCACCATGGACGAGGATCCGGCGTTCTTCGACCTCATCA
CGGGCGACGACCCTCTTGTGAAAAAAATGGCGACTCTGCCGCCGTCGATG
AACTTCAAGACAACGTGGCCGACAGCTTGTGGAATGGAGAGCATGGCCAT
CCTTGAGACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATGAAAG
ACATGGCGAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGCGAAC
TCAATGCAGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCTTGAC
GACGGAGGAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGCCACACC
CTTGTTCAATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAAAG
AGGACTTCACGAAAACAGATATGCGCTTTCTTGGTCTTCGCCTCGCCGCC
GTGCTCGTGGTCGCCACTGCCATGGGCCAGGCCTCGGACAAGAACGGTGG
CCCCTTGAATCGTGTCAAGCGCATGCTTCAGGGAGACACCACGACCACGG
CGGCGACAGCAAAGGCCTTTATCAGCGACCATGAAATACAAGACTCGTGG
GCCACTGATCCCATCCTCAAGAGCGCCAAACGCCTTATGAATGGCGATCA
CGCCAACCTAGTCGTTGACATGAGCTTGGGCAATGAGGTGAAAGAGATTT
TCAGTGATCCGGACACCACTTACGCGATGTTGCAAGGGTGCTCACGGATC
CCAGCATGCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAACTATCG
ATCTCTCGGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCAGCTCCGC
CAAATCACCATGGACGAGGATCCGGCGTTCTTCGACCTCATCACGGGCGA
CGACCCTCTTGTGAAAAAAATGGCGACTCTGCCGCCGTCGATGAACTTCA
AGACAACGTGGCCGACAGCTTGTGGAATGGAGAGCATGGCCATCCTTGAG
ACCTATCGCAAGTTTGTGGCGACGGCCATCAAGGGCATGAAAGACATGGC
GAACCCCGTCGCTCTAGCCGAAACCATGCAGAAGGTCGCGAACTCAATGC
AGCCCAGCACTCTGCAGGCTGATGGCACCCACCGGGCCTTGACGACGGAG
GAACGGCGCATGACTGAGCTTGTCGCCCGCGTCGAGCCACACCCTTGTTC
AATGTGTTACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAAAGAGGACTT
CACGAAAACAGATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCG
TGGTCGCCACTGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTG
AATCGTGTCAAGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGAC
AGCAAAGGCCTTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTG
ATCCCATCCTCAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAAC
CTAGTCGTTGACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGA
TCCGGACACCACTTACGCGATGTTGCAAGGGTGCTCACGGATCCCAGCAT
GCTCTTCGGAGTCGGGGCTTCCATGGGCGACCAGTAACTATCGATCTCTC
GGAGCTCAAGGGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCA
CCATGGACGAGGATCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCT
CTTGTGAAAAAAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAAC
GTGGCCGACAGCTTGTGGAATGGAGAGCATGGCCATCCTTGAGACCTATC
GCAAGTTTGTGGCGACGGCCATCAAGGGCATGAAAGACATGGCGAACCCC
GTCGCTCTAGCCGAAACCATGCAGAAGGTCGCGAACTCAATGCAGCCCAG
CACTCTGCAGGCTGATGGCACCCACCGGGCCTTGACGACGGAGGAACGGC
GCATGACTGAGCTTGTCGCCCGCGTCGAGCCACACCCTTGTTCAATGTGT
TACCCGGCGTGAAGGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAA
ACAGATATGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGC
CACTGCCATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTG
TCAAGCGCATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAG
GCCTTTATCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCAT
CCTCAAGAGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCG
TTGACATGAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGAC
ACCACTTACGCGATGTTGCAAGGGTGCTCACGGATCCCAGCATGCTCTTC
GGAGTCGGGGCTTCCATGGGCGACCAGTAACTATCGATCTCTCGGAGCTC
AAGGGCAAAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGA
CGAGGATCCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGA
AAAAAATGGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCG
ACAGCTTGTGGAATGGAGAGCATGGCCATCCTTGAGACCTATCGCAAGTT
TGTGGCGACGGCCATCAAGGGCATGAAAGACATGGCGAACCCCGTCGCTC
TAGCCGAAACCATGCAGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTG
CAGGCTGATGGCACCCACCGGGCCTTGACGACGGAGGAACGGCGCATGAC
TGAGCTTGTCGCCCGCGTCGAGCCACACCCTTGTTCAATGTGTTACCCGG
CGTGAAGGCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATA
TGCGCTTTCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGCC
ATGGGCCAGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGCG
CATGCTTCAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTTA
TCAGCGACCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAAG
AGCGCCAAACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACAT
GAGCTTGGGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACTT
ACGCGATGTTGCAAGGGTGCTCACGGATCCCAGCATGCTCTTCGGAGTCG
GGGCTTCCATGGGCGACCAGTAACTATCGATCTCTCGGAGCTCAAGGGCA
AAGTACCGGACATCGTCGAGCAGCTCCGCCAAATCACCATGGACGAGGAT
CCGGCGTTCTTCGACCTCATCACGGGCGACGACCCTCTTGTGAAAAAAAT
GGCGACTCTGCCGCCGTCGATGAACTTCAAGACAACGTGGCCGACAGCTT
GTGGAATGGAGAGCATGGCCATCCTTGAGACCTATCGCAAGTTTGTGGCG
ACGGCCATCAAGGGCATGAAAGACATGGCGAACCCCGTCGCTCTAGCCGA
AACCATGCAGAAGGTCGCGAACTCAATGCAGCCCAGCACTCTGCAGGCTG
ATGGCACCCACCGGGCCTTGACGACGGAGGAACGGCGCATGACTGAGCTT
GTCGCCCGCGTCGAGCCACACCCTTGTTCAATGTGTTACCCGGCGTGAAG
GCCTTGAGAGCCAAGGCCAAAGAGGACTTCACGAAAACAGATATGCGCTT
TCTTGGTCTTCGCCTCGCCGCCGTGCTCGTGGTCGCCACTGCCATGGGCC
AGGCCTCGGACAAGAACGGTGGCCCCTTGAATCGTGTCAAGCGCATGCTT
CAGGGAGACACCACGACCACGGCGGCGACAGCAAAGGCCTTTATCAGCGA
CCATGAAATACAAGACTCGTGGGCCACTGATCCCATCCTCAAGAGCGCCA
AACGCCTTATGAATGGCGATCACGCCAACCTAGTCGTTGACATGAGCTTG
GGCAATGAGGTGAAAGAGATTTTCAGTGATCCGGACACCACTTACGCGAT
GTTGCAAG back to top
|