jgi.p|Nanoce1779_2|585553, mRNA_3845 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585553
Unique Name	mRNA_3845
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2448
Alignment location	scaffold_8:186270..188717 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585639
Track	FilteredModels2
ProteinId	585553

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:186270..188717 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585553	gene_3845	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585553	mRNA_3845-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3845	CDS_3845	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:186270..188717-
coding sequence from alignment at scaffold_8:186270..188717-

mRNA sequence

>mRNA_3845 ID=mRNA_3845|Name=jgi.p|Nanoce1779_2|585553|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp
GACAGACCTTTTTACTTACGACAACGCTTCCGTCTCCTCTTTCGCGGGGA
TCCACAAGCATAGTCGTCGCACTCTTCACCCTGCATCCACTGCATCCACC
ACCGGCACCAGTACGGAAACAACACAACAAACACGAAGAGACTGCTGTAT
TTTTTATCATTGCTGCCCATGTCTGATCCACAAGCAACCACCGCCGCCCT
CTCTTCGCTCAATTTCGATGAGGAAGCCGCTGCCCTCGAGCCCGCCATGG
CGGCTGTTCTCCCCTCCTCCTCCGAGATTTTTGTCTCCGGCCAGACCGCC
TTTGAAGACATGACTGACAAAATGAGAGACGTTTTATTGCAGCAGCAGCA
AAAGTTGCTTGACCGTGAAAACATAGGCGTCACCCTTGATCCTTCTTCAT
GGCCCATTGTGCATGGCACTCGTGACTCCGCTGACCACACCATCCTCAAG
CAGCCCCACGGCGACCCGACTCAGGGCTTCTATCTTTTCAATACACAACT
CATCCAAGAAGAAGAGGAGACCAACAGCTTGTGGATGGGTCAGCTGCTTA
TGCAAAATGTGGGCGGACCCTTGGGCAGCCGGGCAGAGGGGGGGGCAGGG
CCAAGTTTTTTTGATGAGGCAGGGGCAATGGTTGGCTTTAAGAAGGACGA
TGCCAACGCTGTCTCGGTAATAACCGAGCGTGTGTCGGACACGGAGACGC
GCCTTTGGACGTCAACGATTGGGAACGTGGTGGTCTATAGGCAGCTGCGG
GGGGCAAGGGGGCTGCAGCGACTGGCGACGCTGAATCATGGACGGAACAC
GCGCTTCCACGGATCATACGCTTTTGTGGCATCGAACGGAACAGAAAATG
CCTTTTACACGACGATGGAAGATCAGGTCCTTCGATTTGTTTTGCGAGGC
AACGACATGGAGGGGTGGCATATCGTGCAGGCGGGTGAGGTGGCCTTGCC
AGCGCCCATGCCGTCCCTCACCGGAGGCAAAAACGAGGTTGGGGACGACC
ACCTGGTAGGTTTGACCTTGTTGGACGATGGCACTATCATCTCCAGCTCT
AAAAAGGGAGAAGTTATGGCAGTGCGCCTGGATTCGCAGGGGAAGCTGAT
TCACAAAGACCATCTGGCCCTGAACCCATTTGCGCGAGGCGGGCCCTCCT
GGGTCTCCAACTCCATCTCCTCTACGGGGCAATCCATATTTGTCGTCACT
CACCGCGAGCTCATACGCGTCGACTACGACCCGACGACGCACAAGCTATC
CTTCAAGTGGACGGCGCTTTATCAGCCTGACGCTGCCGCCACAGCCAGCT
GGTTCGTTGGTCGACTCGGAGCCGGCTCAGGCTCCACGCCCTCGATCACA
ACATGCGATGGCCGGAAACTTGTGGTTATTACGGATGGAGTTTTACCCAT
GCATTTGCTTTGGTATGATGCGGCTACAGGGGAGCTGGTTGCCAAACGCA
AGGTCCAGTTTGGATCTGACGCGGACGGTGACGTCCCCACCACAAGCGAG
CAGTCCGTGGCCGTGGCTGGATGCAAGGCTTTCGTGGTGCAGAACTATAT
GGGTACGGATCGTCTTAACGATGACATAATGTGTGCATCAGCCCCGCGGC
CTGAGAGTAGCCTTCGACGTCGGCTGGCAGACTATTGTTTATCGCGCAGG
GATGCGAAGAATCCCCAAGACCTTTTCCCCACCAAGACCTGCCCGGTCAT
CTTTGGCTGCTCTGCGTTTGGCGCTGCCGTATACGAGGTTATAGGACCGG
ACCAAAAGGATGTGGCGCGTGTGTGGGCCCGCGATGACATCAGCTGCGGG
ACTTCGATTCCCCTCATCTCCACGCATAACAATAGCCGAATGACGTATTG
TGTGGGCTTGAAGAAAGGCAGCACTCAATGGGCGTTGTTGGGCATGGATC
TGGAAACGGGAGAGGATCGCACCAATCTCCAATTTTACGATCGAAATTTA
GCATTGAATGCGTTGGCAAATCCTTTTTATGCGGGCGTAGAGGCTACAGG
GGACAACATTGTTACCGTTGGCGCGATTGGTGGCGTGCTGCATCTCTCGC
CCGAAGGTGATAGTCATGTTGCAGGACTCTCTATTCTCTCCGCTGATAAG
CAAGGACAAGAAACGGCAGAGTTTATCGAAGACATCGGAGTGGGGGTGCT
GCGTTTGATTAAAAATAGGGAGGGAACGACTGTGGCCGCGGAGGGCACGA
TGACATCCAAGCTGCAGCGGGCAATTAAAGGCACCTCGGTAGAGGCAAAA
ATCATTTCCGCTGTGCTCTTCGGTGTGGTAGTACTTGCTGTCGCATTCAG
GTTGCATAAGAAGCGTACACTGCCATCCCCGCGCATACCCCGGTAAAAAA
AAAAGTGTACTAAGTAAGAGGGTGAGCAATAAAAATATTATGCATGTGGT
TGATATTTGAAATGGTTAAAAAATACGTGTGGAATTATGCCTCCTGCA

protein sequence of jgi.p|Nanoce1779_2|585553

>mRNA_3845-protein ID=mRNA_3845-protein|Name=jgi.p|Nanoce1779_2|585553|organism=Nannochloropsis oceanica|type=polypeptide|length=726bp
MSDPQATTAALSSLNFDEEAAALEPAMAAVLPSSSEIFVSGQTAFEDMTD
KMRDVLLQQQQKLLDRENIGVTLDPSSWPIVHGTRDSADHTILKQPHGDP
TQGFYLFNTQLIQEEEETNSLWMGQLLMQNVGGPLGSRAEGGAGPSFFDE
AGAMVGFKKDDANAVSVITERVSDTETRLWTSTIGNVVVYRQLRGARGLQ
RLATLNHGRNTRFHGSYAFVASNGTENAFYTTMEDQVLRFVLRGNDMEGW
HIVQAGEVALPAPMPSLTGGKNEVGDDHLVGLTLLDDGTIISSSKKGEVM
AVRLDSQGKLIHKDHLALNPFARGGPSWVSNSISSTGQSIFVVTHRELIR
VDYDPTTHKLSFKWTALYQPDAAATASWFVGRLGAGSGSTPSITTCDGRK
LVVITDGVLPMHLLWYDAATGELVAKRKVQFGSDADGDVPTTSEQSVAVA
GCKAFVVQNYMGTDRLNDDIMCASAPRPESSLRRRLADYCLSRRDAKNPQ
DLFPTKTCPVIFGCSAFGAAVYEVIGPDQKDVARVWARDDISCGTSIPLI
STHNNSRMTYCVGLKKGSTQWALLGMDLETGEDRTNLQFYDRNLALNALA
NPFYAGVEATGDNIVTVGAIGGVLHLSPEGDSHVAGLSILSADKQGQETA
EFIEDIGVGVLRLIKNREGTTVAAEGTMTSKLQRAIKGTSVEAKIISAVL
FGVVVLAVAFRLHKKRTLPSPRIPR*

mRNA from alignment at scaffold_8:186270..188717-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3845 ID=mRNA_3845|Name=jgi.p|Nanoce1779_2|585553|organism=Nannochloropsis oceanica|type=mRNA|length=2448bp|location=Sequence derived from alignment at scaffold_8:186270..188717- (Nannochloropsis oceanica)
GACAGACCTTTTTACTTACGACAACGCTTCCGTCTCCTCTTTCGCGGGGA
TCCACAAGCATAGTCGTCGCACTCTTCACCCTGCATCCACTGCATCCACC
ACCGGCACCAGTACGGAAACAACACAACAAACACGAAGAGACTGCTGTAT
TTTTTATCATTGCTGCCCATGTCTGATCCACAAGCAACCACCGCCGCCCT
CTCTTCGCTCAATTTCGATGAGGAAGCCGCTGCCCTCGAGCCCGCCATGG
CGGCTGTTCTCCCCTCCTCCTCCGAGATTTTTGTCTCCGGCCAGACCGCC
TTTGAAGACATGACTGACAAAATGAGAGACGTTTTATTGCAGCAGCAGCA
AAAGTTGCTTGACCGTGAAAACATAGGCGTCACCCTTGATCCTTCTTCAT
GGCCCATTGTGCATGGCACTCGTGACTCCGCTGACCACACCATCCTCAAG
CAGCCCCACGGCGACCCGACTCAGGGCTTCTATCTTTTCAATACACAACT
CATCCAAGAAGAAGAGGAGACCAACAGCTTGTGGATGGGTCAGCTGCTTA
TGCAAAATGTGGGCGGACCCTTGGGCAGCCGGGCAGAGGGGGGGGCAGGG
CCAAGTTTTTTTGATGAGGCAGGGGCAATGGTTGGCTTTAAGAAGGACGA
TGCCAACGCTGTCTCGGTAATAACCGAGCGTGTGTCGGACACGGAGACGC
GCCTTTGGACGTCAACGATTGGGAACGTGGTGGTCTATAGGCAGCTGCGG
GGGGCAAGGGGGCTGCAGCGACTGGCGACGCTGAATCATGGACGGAACAC
GCGCTTCCACGGATCATACGCTTTTGTGGCATCGAACGGAACAGAAAATG
CCTTTTACACGACGATGGAAGATCAGGTCCTTCGATTTGTTTTGCGAGGC
AACGACATGGAGGGGTGGCATATCGTGCAGGCGGGTGAGGTGGCCTTGCC
AGCGCCCATGCCGTCCCTCACCGGAGGCAAAAACGAGGTTGGGGACGACC
ACCTGGTAGGTTTGACCTTGTTGGACGATGGCACTATCATCTCCAGCTCT
AAAAAGGGAGAAGTTATGGCAGTGCGCCTGGATTCGCAGGGGAAGCTGAT
TCACAAAGACCATCTGGCCCTGAACCCATTTGCGCGAGGCGGGCCCTCCT
GGGTCTCCAACTCCATCTCCTCTACGGGGCAATCCATATTTGTCGTCACT
CACCGCGAGCTCATACGCGTCGACTACGACCCGACGACGCACAAGCTATC
CTTCAAGTGGACGGCGCTTTATCAGCCTGACGCTGCCGCCACAGCCAGCT
GGTTCGTTGGTCGACTCGGAGCCGGCTCAGGCTCCACGCCCTCGATCACA
ACATGCGATGGCCGGAAACTTGTGGTTATTACGGATGGAGTTTTACCCAT
GCATTTGCTTTGGTATGATGCGGCTACAGGGGAGCTGGTTGCCAAACGCA
AGGTCCAGTTTGGATCTGACGCGGACGGTGACGTCCCCACCACAAGCGAG
CAGTCCGTGGCCGTGGCTGGATGCAAGGCTTTCGTGGTGCAGAACTATAT
GGGTACGGATCGTCTTAACGATGACATAATGTGTGCATCAGCCCCGCGGC
CTGAGAGTAGCCTTCGACGTCGGCTGGCAGACTATTGTTTATCGCGCAGG
GATGCGAAGAATCCCCAAGACCTTTTCCCCACCAAGACCTGCCCGGTCAT
CTTTGGCTGCTCTGCGTTTGGCGCTGCCGTATACGAGGTTATAGGACCGG
ACCAAAAGGATGTGGCGCGTGTGTGGGCCCGCGATGACATCAGCTGCGGG
ACTTCGATTCCCCTCATCTCCACGCATAACAATAGCCGAATGACGTATTG
TGTGGGCTTGAAGAAAGGCAGCACTCAATGGGCGTTGTTGGGCATGGATC
TGGAAACGGGAGAGGATCGCACCAATCTCCAATTTTACGATCGAAATTTA
GCATTGAATGCGTTGGCAAATCCTTTTTATGCGGGCGTAGAGGCTACAGG
GGACAACATTGTTACCGTTGGCGCGATTGGTGGCGTGCTGCATCTCTCGC
CCGAAGGTGATAGTCATGTTGCAGGACTCTCTATTCTCTCCGCTGATAAG
CAAGGACAAGAAACGGCAGAGTTTATCGAAGACATCGGAGTGGGGGTGCT
GCGTTTGATTAAAAATAGGGAGGGAACGACTGTGGCCGCGGAGGGCACGA
TGACATCCAAGCTGCAGCGGGCAATTAAAGGCACCTCGGTAGAGGCAAAA
ATCATTTCCGCTGTGCTCTTCGGTGTGGTAGTACTTGCTGTCGCATTCAG
GTTGCATAAGAAGCGTACACTGCCATCCCCGCGCATACCCCGGTAAAAAA
AAAAGTGTACTAAGTAAGAGGGTGAGCAATAAAAATATTATGCATGTGGT
TGATATTTGAAATGGTTAAAAAATACGTGTGGAATTATGCCTCCTGCA

Coding sequence (CDS) from alignment at scaffold_8:186270..188717-

>mRNA_3845 ID=mRNA_3845|Name=jgi.p|Nanoce1779_2|585553|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_8:186270..188717- (Nannochloropsis oceanica)
ATGTCTGATCCACAAGCAACCACCGCCGCCCTCTCTTCGCTCAATTTCGA
TGAGGAAGCCGCTGCCCTCGAGCCCGCCATGGCGGCTGTTCTCCCCTCCT
CCTCCGAGATTTTTGTCTCCGGCCAGACCGCCTTTGAAGACATGACTGAC
AAAATGAGAGACGTTTTATTGCAGCAGCAGCAAAAGTTGCTTGACCGTGA
AAACATAGGCGTCACCCTTGATCCTTCTTCATGGCCCATTGTGCATGGCA
CTCGTGACTCCGCTGACCACACCATCCTCAAGCAGCCCCACGGCGACCCG
ACTCAGGGCTTCTATCTTTTCAATACACAACTCATCCAAGAAGAAGAGGA
GACCAACAGCTTGTGGATGGGTCAGCTGCTTATGCAAAATGTGGGCGGAC
CCTTGGGCAGCCGGGCAGAGGGGGGGGCAGGGCCAAGTTTTTTTGATGAG
GCAGGGGCAATGGTTGGCTTTAAGAAGGACGATGCCAACGCTGTCTCGGT
AATAACCGAGCGTGTGTCGGACACGGAGACGCGCCTTTGGACGTCAACGA
TTGGGAACGTGGTGGTCTATAGGCAGCTGCGGGGGGCAAGGGGGCTGCAG
CGACTGGCGACGCTGAATCATGGACGGAACACGCGCTTCCACGGATCATA
CGCTTTTGTGGCATCGAACGGAACAGAAAATGCCTTTTACACGACGATGG
AAGATCAGGTCCTTCGATTTGTTTTGCGAGGCAACGACATGGAGGGGTGG
CATATCGTGCAGGCGGGTGAGGTGGCCTTGCCAGCGCCCATGCCGTCCCT
CACCGGAGGCAAAAACGAGGTTGGGGACGACCACCTGGTAGGTTTGACCT
TGTTGGACGATGGCACTATCATCTCCAGCTCTAAAAAGGGAGAAGTTATG
GCAGTGCGCCTGGATTCGCAGGGGAAGCTGATTCACAAAGACCATCTGGC
CCTGAACCCATTTGCGCGAGGCGGGCCCTCCTGGGTCTCCAACTCCATCT
CCTCTACGGGGCAATCCATATTTGTCGTCACTCACCGCGAGCTCATACGC
GTCGACTACGACCCGACGACGCACAAGCTATCCTTCAAGTGGACGGCGCT
TTATCAGCCTGACGCTGCCGCCACAGCCAGCTGGTTCGTTGGTCGACTCG
GAGCCGGCTCAGGCTCCACGCCCTCGATCACAACATGCGATGGCCGGAAA
CTTGTGGTTATTACGGATGGAGTTTTACCCATGCATTTGCTTTGGTATGA
TGCGGCTACAGGGGAGCTGGTTGCCAAACGCAAGGTCCAGTTTGGATCTG
ACGCGGACGGTGACGTCCCCACCACAAGCGAGCAGTCCGTGGCCGTGGCT
GGATGCAAGGCTTTCGTGGTGCAGAACTATATGGGTACGGATCGTCTTAA
CGATGACATAATGTGTGCATCAGCCCCGCGGCCTGAGAGTAGCCTTCGAC
GTCGGCTGGCAGACTATTGTTTATCGCGCAGGGATGCGAAGAATCCCCAA
GACCTTTTCCCCACCAAGACCTGCCCGGTCATCTTTGGCTGCTCTGCGTT
TGGCGCTGCCGTATACGAGGTTATAGGACCGGACCAAAAGGATGTGGCGC
GTGTGTGGGCCCGCGATGACATCAGCTGCGGGACTTCGATTCCCCTCATC
TCCACGCATAACAATAGCCGAATGACGTATTGTGTGGGCTTGAAGAAAGG
CAGCACTCAATGGGCGTTGTTGGGCATGGATCTGGAAACGGGAGAGGATC
GCACCAATCTCCAATTTTACGATCGAAATTTAGCATTGAATGCGTTGGCA
AATCCTTTTTATGCGGGCGTAGAGGCTACAGGGGACAACATTGTTACCGT
TGGCGCGATTGGTGGCGTGCTGCATCTCTCGCCCGAAGGTGATAGTCATG
TTGCAGGACTCTCTATTCTCTCCGCTGATAAGCAAGGACAAGAAACGGCA
GAGTTTATCGAAGACATCGGAGTGGGGGTGCTGCGTTTGATTAAAAATAG
GGAGGGAACGACTGTGGCCGCGGAGGGCACGATGACATCCAAGCTGCAGC
GGGCAATTAAAGGCACCTCGGTAGAGGCAAAAATCATTTCCGCTGTGCTC
TTCGGTGTGGTAGTACTTGCTGTCGCATTCAGGTTGCATAAGAAGCGTAC
ACTGCCATCCCCGCGCATACCCCGGTAA

Synonyms

Publications