jgi.p|Nanoce1779_2|577164, mRNA_384 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577164
Unique NamemRNA_384
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1227
Alignment locationscaffold_3:952568..953971 +

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Properties
Property NameValue
TranscriptId577250
TrackFilteredModels2
ProteinId577164
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:952568..953971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577164gene_384Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577164mRNA_384-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_384CDS_384Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_384 ID=mRNA_384|Name=jgi.p|Nanoce1779_2|577164|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ACAGGCCATGGTATTAACACCAAGGTATTAAAACTAACAATAGGGCAAGC
ACACCTGCACCCGCACCCATTACCACCGCAAGGGGCCATGGTCTTGATAT
CAAGGAGAAAAGGGCGCAGCGAAGGCTCCCTCCCGTTGCTGCTGCTGGTG
CTGTTGCTCATAGTTCACAACCTCGGTCAAGTCCTAGGATCGGCGGTGGT
CACCACCAGTGCCACTCTCACCACCACCTTCCCTGATCACATCGACCTGG
CCTATGACATTGATCAACGCCTTCTCGAAAACCGTGCTTGCGAAGATCTG
AGTGACTGCAGAAGCTGCTTTCGGACACCCGGCTGTGGATTCTGCGGTGG
CACCGGACAATGCATGCCTGAAGCCCATGCAAGCACCTGTGGAAAAGGGT
GGAGCAACGCTGGGGTGTGCTATACGACCTGCCCAGTGGAATCTGTCCCT
TTTCACGACGCTGCTGGTGTGATTCAGCTGGGTGCCCAAGCGCCACGGCC
GGTTAAGTACATTCCGGGGGATGCGTGCACGTATACAATTTGGCCATTAC
TGGACACTGGGACAACAGGCGGTAATGGTCCCACGGGGGGGAACCGACGA
ACGTTGATGATTCGTTTGCAGTAAGTTTGAAGCCATAAGGGTTTGGGCAC
AGGGTGAAGAGGGACGAAGAGAGACATGCCTCAAGCTTTCTTCTTCTTTC
ATTCTTTTCAATAGGTTCGAGTACATGGATCTGGGGCCTGGTGATAGCCT
CAGCATATTTTCCAATGGGCTCGACGGACCGAAGATCCTGTCGATTGGCG
GGAATGGGGAGGGGGTTGTGAATAGGATTATAACGAGTCGCTCGAGCTCA
GTGGTGCTGCGGCTGAACGCGAATGGCCATGAAGGAGGGACTGGCTTTCG
GGTTTATTGGCGGGTAATTGAAAATTCGCCCTTGGACATTTATTTGATCT
CTGCGATCATAGTTACCTCCATCCTAACCTGCATCCTCTGCTCGTGCTGT
TGCAACAACTGCGTGGCGATGATGGTGGGGCAGCACCACGACGATGGCGT
TGGGGGAGGGGGCATGGGCCGCTTCGGATTGTCTTTTGGAGTAGGCGCTC
GTGCTGCTGGTGCTGCTGGTGCAACAGGTCGTGGGATGGCACGCGCCCTC
TCCGCGCAGGAAAAAGCACGCTTGCCCATAGCGCCATATGACCCGGGGCC
GGGGGCCGGGGGGGAGGAAGGGAAGGA
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protein sequence of jgi.p|Nanoce1779_2|577164

>mRNA_384-protein ID=mRNA_384-protein|Name=jgi.p|Nanoce1779_2|577164|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MVLISRRKGRSEGSLPLLLLVLLLIVHNLGQVLGSAVVTTSATLTTTFPD
HIDLAYDIDQRLLENRACEDLSDCRSCFRTPGCGFCGGTGQCMPEAHAST
CGKGWSNAGVCYTTCPVESVPFHDAAGVIQLGAQAPRPVKYIPGDACTYT
IWPLLDTGTTGGNGPTGGNRRTLMIRLQ*
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mRNA from alignment at scaffold_3:952568..953971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_384 ID=mRNA_384|Name=jgi.p|Nanoce1779_2|577164|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at scaffold_3:952568..953971+ (Nannochloropsis oceanica)
ACAGGCCATGGTATTAACACCAAGGTATTAAAACTAACAATAGGGCAAGC
ACACCTGCACCCGCACCCATTACCACCGCAAGGGGCCATGGTCTTGATAT
CAAGGAGAAAAGGGCGCAGCGAAGGCTCCCTCCCGTTGCTGCTGCTGGTG
CTGTTGCTCATAGTTCACAACCTCGGTCAAGTCCTAGGATCGGCGGTGGT
CACCACCAGTGCCACTCTCACCACCACCTTCCCTGATCACATCGACCTGG
CCTATGACATTGATCAACGCCTTCTCGAAAACCGTGCTTGCGAAGATCTG
AGTGACTGCAGAAGCTGCTTTCGGACACCCGGCTGTGGATTCTGCGGTGG
CACCGGACAATGCATGCCTGAAGCCCATGCAAGCACCTGTGGAAAAGGGT
GGAGCAACGCTGGGGTGTGCTATACGACCTGCCCAGTGGAATCTGTCCCT
TTTCACGACGCTGCTGGTGTGATTCAGCTGGGTGCCCAAGCGCCACGGCC
GGTTAAGTACATTCCGGGGGATGCGTGCACGTATACAATTTGGCCATTAC
TGGACACTGGGACAACAGGCGGTAATGGTCCCACGGGGGGGAACCGACGA
ACGTTGATGATTCGTTTGCAGTAAGTTTGAAGCCATAAGGGTTTGGGCAC
AGGGTGAAGAGGGACGAAGAGAGACATGCCTCAAGCTTTCTTCTTCTTTC
ATTCTTTTCAATAGGTTCGAGTACATGGATCTGGGGCCTGGTGATAGCCT
CAGCATATTTTCCAATGGGCTCGACGGACCGAAGATCCTGTCGATTGGCG
GGAATGGGGAGGGGGTTGTGAATAGGATTATAACGAGTCGCTCGAGCTCA
GTGGTGCTGCGGCTGAACGCGAATGGCCATGAAGGAGGGACTGGCTTTCG
GGTTTATTGGCGGGTAATTGAAAATTCGCCCTTGGACATTTATTTGATCT
CTGCGATCATAGGTGAGCTGGGTTGCAGGGGTGGATGGGAGGGTGGGAGG
GAGGGAGGGTGAGAGGGAGGGAGGGAGGGAGTGTGAGAAGGAAGGAGGGA
GGCTTTGCATTGGTTCTTTCTTTTTCTACGTCGTGGAATCACGCTCTCAG
ATTCGTACCCTCCCTTCCTTTCTCTCATTTTCTTTCCAGTTACCTCCATC
CTAACCTGCATCCTCTGCTCGTGCTGTTGCAACAACTGCGTGGCGATGAT
GGTGGGGCAGCACCACGACGATGGCGTTGGGGGAGGGGGCATGGGCCGCT
TCGGATTGTCTTTTGGAGTAGGCGCTCGTGCTGCTGGTGCTGCTGGTGCA
ACAGGTCGTGGGATGGCACGCGCCCTCTCCGCGCAGGAAAAAGCACGCTT
GCCCATAGCGCCATATGACCCGGGGCCGGGGGCCGGGGGGGAGGAAGGGA
AGGA
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Coding sequence (CDS) from alignment at scaffold_3:952568..953971+

>mRNA_384 ID=mRNA_384|Name=jgi.p|Nanoce1779_2|577164|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_3:952568..953971+ (Nannochloropsis oceanica)
ATGGTCTTGATATCAAGGAGAAAAGGGCGCAGCGAAGGCTCCCTCCCGTT
GCTGCTGCTGGTGCTGTTGCTCATAGTTCACAACCTCGGTCAAGTCCTAG
GATCGGCGGTGGTCACCACCAGTGCCACTCTCACCACCACCTTCCCTGAT
CACATCGACCTGGCCTATGACATTGATCAACGCCTTCTCGAAAACCGTGC
TTGCGAAGATCTGAGTGACTGCAGAAGCTGCTTTCGGACACCCGGCTGTG
GATTCTGCGGTGGCACCGGACAATGCATGCCTGAAGCCCATGCAAGCACC
TGTGGAAAAGGGTGGAGCAACGCTGGGGTGTGCTATACGACCTGCCCAGT
GGAATCTGTCCCTTTTCACGACGCTGCTGGTGTGATTCAGCTGGGTGCCC
AAGCGCCACGGCCGGTTAAGTACATTCCGGGGGATGCGTGCACGTATACA
ATTTGGCCATTACTGGACACTGGGACAACAGGCGGTAATGGTCCCACGGG
GGGGAACCGACGAACGTTGATGATTCGTTTGCAGTAA
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Synonyms
Publications