jgi.p|Nanoce1779_2|585503, mRNA_3833 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585503
Unique NamemRNA_3833
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1099
Alignment locationscaffold_8:151724..152822 -

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Properties
Property NameValue
TranscriptId585589
TrackFilteredModels2
ProteinId585503
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:151724..152822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585503gene_3833Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585503mRNA_3833-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3833CDS_3833Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3833 ID=mRNA_3833|Name=jgi.p|Nanoce1779_2|585503|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp
CGTTCATCCTCCGCCGATGTCAGTACCCGGTCCGGCCTTTCTTCGCCATG
ATCATAAACAAATCTCAGGGGCAGACCTTCCAAAAGTTGCAATCTACTTG
CCGTCCCAGGTATTTGCTCACGGTCAACTTTGTGTCACGCTCTCGAGAGT
ATGAGACCCCACCAACATCACCATGGTGGTCACCCACCCTCCTCTACGCG
GTCAGCCCCCTCCCACACATACCACACCCAATGTAGTCTATAAGCCTCGA
CTAGATATACATGGCTTCCCTGAATTTCACTTCGTGAAGCATTTCCTTGG
CAATTTCGACGCCGATCTCGATGGATCCTACCGCGTTTTGAATGACCACC
AAGTTAAGACTAAGATGCTGGTCACGGAAACGGACGGGTGGATCCGTGTT
ACCGAATCCCCAGCCTTTTCAGTTGTTGCCACGCCAGAAAATCTGCGTTT
CCCCGACGTATGTAACCGGCCTAGAAGATACACAATTTCTGGTGTATGAT
GAGAATGCTCCGATTTATACTCTTTCGAACTCCTGGGAATACACCCGGGT
GAGCGGGCACATCAATCAAGTGCTTAGCATCCTTGATCCGACCACATGGA
CAATGACCATTCAGGACGTTATCAAAGGTCCCAATCCATTGCACCACGAT
AAAAATTGGGTCTATGTGGATAGCTTCCAAAATATTGTCTATGGATGGTA
TTCCTCCATCCAGATCGGTGCAATCGATTTGGTTGCATCCGAATTGGTCG
TGCACACATCCATTGAGTCCCCGAAATCCTTTTCATCCATGCGGGGATCA
ACGAACGGTTTCATGCATGAAGACGAATGGTGGTTCGTGACACATACAGT
GCTACACCGCCCCGGGCAGCTGCCCCTCCAATATTTCCATCAACTCCGTG
TCAACTCCAACGAATACATGGGATCGTCCACCGTCACCTTGGTGTGAATA
AACCCATACACGTCACAACACCTCACACAACTGTCCATGTAACCACCACA
GTCACCACCACAGCAACCCCAAGACATGATGGAAGTATAGACTACCACAA
AAGCGCACAGCCACACCTAACAACTTTTCGAGCTCAATAAATCGCAGGG
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protein sequence of jgi.p|Nanoce1779_2|585503

>mRNA_3833-protein ID=mRNA_3833-protein|Name=jgi.p|Nanoce1779_2|585503|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MTTKLRLRCWSRKRTGGSVLPNPQPFQLLPRQKICVSPTYVTGLEDTQFL
VYDENAPIYTLSNSWEYTRVSGHINQVLSILDPTTWTMTIQDVIKGPNPL
HHDKNWVYVDSFQNIVYGWYSSIQIGAIDLVASELVVHTSIESPKSFSSM
RGSTNGFMHEDEWWFVTHTVLHRPGQLPLQYFHQLRVNSNEYMGSSTVTL
V*
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mRNA from alignment at scaffold_8:151724..152822-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3833 ID=mRNA_3833|Name=jgi.p|Nanoce1779_2|585503|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp|location=Sequence derived from alignment at scaffold_8:151724..152822- (Nannochloropsis oceanica)
CGTTCATCCTCCGCCGATGTCAGTACCCGGTCCGGCCTTTCTTCGCCATG
ATCATAAACAAATCTCAGGGGCAGACCTTCCAAAAGTTGCAATCTACTTG
CCGTCCCAGGTATTTGCTCACGGTCAACTTTGTGTCACGCTCTCGAGAGT
ATGAGACCCCACCAACATCACCATGGTGGTCACCCACCCTCCTCTACGCG
GTCAGCCCCCTCCCACACATACCACACCCAATGTAGTCTATAAGCCTCGA
CTAGATATACATGGCTTCCCTGAATTTCACTTCGTGAAGCATTTCCTTGG
CAATTTCGACGCCGATCTCGATGGATCCTACCGCGTTTTGAATGACCACC
AAGTTAAGACTAAGATGCTGGTCACGGAAACGGACGGGTGGATCCGTGTT
ACCGAATCCCCAGCCTTTTCAGTTGTTGCCACGCCAGAAAATCTGCGTTT
CCCCGACGTATGTAACCGGCCTAGAAGATACACAATTTCTGGTGTATGAT
GAGAATGCTCCGATTTATACTCTTTCGAACTCCTGGGAATACACCCGGGT
GAGCGGGCACATCAATCAAGTGCTTAGCATCCTTGATCCGACCACATGGA
CAATGACCATTCAGGACGTTATCAAAGGTCCCAATCCATTGCACCACGAT
AAAAATTGGGTCTATGTGGATAGCTTCCAAAATATTGTCTATGGATGGTA
TTCCTCCATCCAGATCGGTGCAATCGATTTGGTTGCATCCGAATTGGTCG
TGCACACATCCATTGAGTCCCCGAAATCCTTTTCATCCATGCGGGGATCA
ACGAACGGTTTCATGCATGAAGACGAATGGTGGTTCGTGACACATACAGT
GCTACACCGCCCCGGGCAGCTGCCCCTCCAATATTTCCATCAACTCCGTG
TCAACTCCAACGAATACATGGGATCGTCCACCGTCACCTTGGTGTGAATA
AACCCATACACGTCACAACACCTCACACAACTGTCCATGTAACCACCACA
GTCACCACCACAGCAACCCCAAGACATGATGGAAGTATAGACTACCACAA
AAGCGCACAGCCACACCTAACAACTTTTCGAGCTCAATAAATCGCAGGG
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Coding sequence (CDS) from alignment at scaffold_8:151724..152822-

>mRNA_3833 ID=mRNA_3833|Name=jgi.p|Nanoce1779_2|585503|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_8:151724..152822- (Nannochloropsis oceanica)
ATGACCACCAAGTTAAGACTAAGATGCTGGTCACGGAAACGGACGGGTGG
ATCCGTGTTACCGAATCCCCAGCCTTTTCAGTTGTTGCCACGCCAGAAAA
TCTGCGTTTCCCCGACGTATGTAACCGGCCTAGAAGATACACAATTTCTG
GTGTATGATGAGAATGCTCCGATTTATACTCTTTCGAACTCCTGGGAATA
CACCCGGGTGAGCGGGCACATCAATCAAGTGCTTAGCATCCTTGATCCGA
CCACATGGACAATGACCATTCAGGACGTTATCAAAGGTCCCAATCCATTG
CACCACGATAAAAATTGGGTCTATGTGGATAGCTTCCAAAATATTGTCTA
TGGATGGTATTCCTCCATCCAGATCGGTGCAATCGATTTGGTTGCATCCG
AATTGGTCGTGCACACATCCATTGAGTCCCCGAAATCCTTTTCATCCATG
CGGGGATCAACGAACGGTTTCATGCATGAAGACGAATGGTGGTTCGTGAC
ACATACAGTGCTACACCGCCCCGGGCAGCTGCCCCTCCAATATTTCCATC
AACTCCGTGTCAACTCCAACGAATACATGGGATCGTCCACCGTCACCTTG
GTGTGA
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Synonyms
Publications