|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 238757 |
| Track | FilteredModels2 |
| ProteinId | 238671 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:950166..951884 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_383 ID=mRNA_383|Name=jgi.p|Nanoce1779_2|238671|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp
TAAGACAATTAAAAGAGAACACGGACAACCGTCGCAGGGCACAAGTGGTA
GTCATCTCCGGCGGGGTCTACAAGGCCTGTTCTAGTCAAAGTAATGATGC
CGCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCCTTGCTGC
AGCAGTAGCCTCATGCCCCTCCCGCAGCAACAACTCCCGTTTCACAACCC
GCCATCTCCATACTCTTCCTCTTCTCCCGCTCACTTTTTCTCTCCCCGTC
ATCGCCGAGCCACCAGCTCTCCTCTCGCCTTTGGACTTGCCCCCTCCCTC
CCGTGCAACGGGCACAGCGCCACCCTCCACCTGCGCAATCGCCATTTCCA
CGGTCGTACATGTGGCGCCATCACTTGCGGGTTGACCGTCCTCCGGGACC
GCACCCTCCGTCGTCTCCTCCCCTCACAATTCACGGGCGACCAATGGAAG
TACTACTGGGGTATCACGGAAAGCGATAAATTCGGAAAGATTTATGAAGC
GGCCTCGTCCACCTTCTTCGGGTTGTGGATCAGCTGGTTCTTGACCTTCC
TGATAGGGCTACCAGCAGCCACGATTTTGGGAACGGTATTTTTGTTTTAT
TGGATCCTGGCGCCGGGCCTGGCAGCATATCGCCGGAATCTAAGTTTTAG
GGGGGGTTATTTTGCACGGCATCCGCGGGATGAGGGAGTGTTCGGGGCGC
TGTTTAGTGGGAAGGTGGTGAGGGTAGGCAGGATAACCCAGGCAGAGGAA
TATAATAGACCGGAGGCAATGGTCATGTGTGTGGAGGACGAAGAAGGGCG
TAAATTGAGGGTGTATGCTCCTGTGTTGCCTAGTTATAAGAGGGTGAGGC
CGGGGATGCGATGCGAGGGTTTGGTGTTGAGTGAGACGCCGGAGTTTGAG
GAATTGCTGGGGGTGTCGGATTTGTTTGTGCCGGCCGCGGGGGCGTGGGT
GGGAGAGTATCCCTACATAGATAAGGTTCCCTTTAAGGCTTTTTTGGGAA
ACAAGCTGAAAGAGGAAGAGGAGGAGGAGGCGATGTCGATGGACTTTTTG
GAAGAGGAAGACGAGCTAGAGGGATTGGATAAAATTTTCGAAGGCGGGAG
TGATGGGTACAGTCGTGGAGACGAGGACATGTTTGCGATGAAGGAGGACG
AAGACGAAGAGCGACGACGGCGGGGAAGAAGACGGCGGTTGATAAATTAA
AAGAGGAGGGAGGAGTGGGGGGGGGATTCAAAAAAAGACTCCGATTTGTT
CGCAACGCGTTGTTCGAAGCGTGAAATAATGAAGTAACAATAGACACAGA
GCAGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|238671 >mRNA_383-protein ID=mRNA_383-protein|Name=jgi.p|Nanoce1779_2|238671|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MMPPSALSSSIMPLATPCCSSSLMPLPQQQLPFHNPPSPYSSSSPAHFFS
PRHRRATSSPLAFGLAPSLPCNGHSATLHLRNRHFHGRTCGAITCGLTVL
RDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASSTFFGLWISWFL
TFLIGLPAATILGTVFLFYWILAPGLAAYRRNLSFRGGYFARHPRDEGVF
GALFSGKVVRVGRITQAEEYNRPEAMVMCVEDEEGRKLRVYAPVLPSYKR
VRPGMRCEGLVLSETPEFEELLGVSDLFVPAAGAWVGEYPYIDKVPFKAF
LGNKLKEEEEEEAMSMDFLEEEDELEGLDKIFEGGSDGYSRGDEDMFAMK
EDEDEERRRRGRRRRLIN* back to topmRNA from alignment at scaffold_3:950166..951884- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_383 ID=mRNA_383|Name=jgi.p|Nanoce1779_2|238671|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at scaffold_3:950166..951884- (Nannochloropsis oceanica)
TAAGACAATTAAAAGAGAACACGGACAACCGTCGCAGGGCACAAGTGGTA
GTCATCTCCGGCGGGGTCTACAAGGCCTGTTCTAGTCAAAGTAATGATGC
CGCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCCTTGCTGC
AGCAGTAGCCTCATGGTAAGTCCAAATTAGCCTCACTTTGATGCAGCAAC
CCTTTGCAGGTTTCCTGTTTGCTGTGGTCGCTTGTGGCTGTGATCTTGCC
TGTCCTCCCGCCTCACTCCATCATGCCCTGGTCGTCCTGAGGAATCAGTT
CGGCAGACCCCATCTTGATGAATCTGGTATCTCATTCTTATGTCCACCCC
TTTCCTTTTTAGCCCACAGCTCACACTCACCATCTCTTTCCCTTTCCCTA
TCCTTTTTCACCCCCCAGCCCCTCCCGCAGCAACAACTCCCGTTTCACAA
CCCGCCATCTCCATACTCTTCCTCTTCTCCCGCTCACTTTTTCTCTCCCC
GTCATCGCCGAGCCACCAGCTCTCCTCTCGCCTTTGGACTTGCCCCCTCC
CTCCCGTGCAACGGGCACAGCGCCACCCTCCACCTGCGCAATCGCCATTT
CCACGGTCGTACATGTGGCGCCATCACTTGCGGGTTGACCGTCCTCCGGG
ACCGCACCCTCCGTCGTCTCCTCCCCTCACAATTCACGGGCGACCAATGG
AAGTACTACTGGGGTATCACGGAAAGCGATAAATTCGGAAAGATTTATGA
AGCGGCCTCGTCCACCTTCTTCGGGTTGTGGATCAGCTGGTTCTTGACCT
TCCTGATAGGGCTACCAGCAGCCACGATTTTGGGAACGGTATTTTTGTTT
TATTGGATCCTGGCGCCGGGCCTGGCAGCATATCGCCGGAATCTAAGTTT
TAGGGGGGGTTATTTTGCACGGCATCCGCGGGATGAGGGAGTGTTCGGGG
CGCTGTTTAGTGGGAAGGTGGTGAGGGTAGGCAGGATAACCCAGGCAGAG
GAATATAATAGACCGGAGGCAATGGTCATGTGTGTGGAGGACGAAGAAGG
GCGTAAATTGAGGGTGTATGCTCCTGTGTTGCCTAGTTATAAGAGGGTGA
GGCCGGGGATGCGATGCGAGGGTTTGGTGTTGAGTGAGACGCCGGAGTTT
GAGGAATTGCTGGGGGTGTCGGATTTGTTTGTGCCGGCCGCGGGGGCGTG
GGTGGGAGAGTATCCCTACATAGATAAGGTTCCCTTTAAGGCTTTTTTGG
GAAACAAGCTGAAAAAGGAGGAGGAGAATAGGAAGAGGCGGCGGAAGGAG
GGTTTGGGGTTGAAGTTGGGCATGGGGGAGGAGGGGGAGGAGGAAGAGGA
GGAGGAGGCGATGTCGATGGACTTTTTGGAAGAGGAAGACGAGCTAGAGG
GATTGGATAAAATTTTCGAAGGCGGGAGTGATGGGTACAGTCGTGGAGAC
GAGGACATGTTTGCGAGTATTTGGGAGGGGAGTATGAAGAGGGGAGGGAG
GGTGAGAAGGGGGTGGGAAGAGGAGGAGGAAGAGGAGGGGTTGTTGCGAG
TGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGGGAAGAAGACGGCGG
TTGATAAATTAAAAGAGGAGGGAGGAGTGGGGGGGGGATTCAAAAAAAGA
CTCCGATTTGTTCGCAACGCGTTGTTCGAAGCGTGAAATAATGAAGTAAC
AATAGACACAGAGCAGGGG back to topCoding sequence (CDS) from alignment at scaffold_3:950166..951884- >mRNA_383 ID=mRNA_383|Name=jgi.p|Nanoce1779_2|238671|organism=Nannochloropsis oceanica|type=CDS|length=4428bp|location=Sequence derived from alignment at scaffold_3:950166..951884- (Nannochloropsis oceanica)
TGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGGGAAGAAGACGGCGG
TTGATAAATTAAGAGGAAGAGGAGGAGGAGGCGATGTCGATGGACTTTTT
GGAAGAGGAAGACGAGCTAGAGGGATTGGATAAAATTTTCGAAGGCGGGA
GTGATGGGTACAGTCGTGGAGACGAGGACATGTTTGCGACCCCTCCCGCA
GCAACAACTCCCGTTTCACAACCCGCCATCTCCATACTCTTCCTCTTCTC
CCGCTCACTTTTTCTCTCCCCGTCATCGCCGAGCCACCAGCTCTCCTCTC
GCCTTTGGACTTGCCCCCTCCCTCCCGTGCAACGGGCACAGCGCCACCCT
CCACCTGCGCAATCGCCATTTCCACGGTCGTACATGTGGCGCCATCACTT
GCGGGTTGACCGTCCTCCGGGACCGCACCCTCCGTCGTCTCCTCCCCTCA
CAATTCACGGGCGACCAATGGAAGTACTACTGGGGTATCACGGAAAGCGA
TAAATTCGGAAAGATTTATGAAGCGGCCTCGTCCACCTTCTTCGGGTTGT
GGATCAGCTGGTTCTTGACCTTCCTGATAGGGCTACCAGCAGCCACGATT
TTGGGAACGGTATTTTTGTTTTATTGGATCCTGGCGCCGGGCCTGGCAGC
ATATCGCCGGAATCTAAGTTTTAGGGGGGGTTATTTTGCACGGCATCCGC
GGGATGAGGGAGTGTTCGGGGCGCTGTTTAGTGGGAAGGTGGTGAGGGTA
GGCAGGATAACCCAGGCAGAGGAATATAATAGACCGGAGGCAATGGTCAT
GTGTGTGGAGGACGAAGAAGGGCGTAAATTGAGGGTGTATGCTCCTGTGT
TGCCTAGTTATAAGAGGGTGAGGCCGGGGATGCGATGCGAGGGTTTGGTG
TTGAGTGAGACGCCGGAGTTTGAGGAATTGCTGGGGGTGTCGGATTTGTT
TGTGCCGGCCGCGGGGGCGTGGGTGGGAGAGTATCCCTACATAGATAAGG
TTCCCTTTAAGGCTTTTTTGGGAAACAAGCTGAAAATGATGCCGCCCTCA
GCATTATCATCATCCATTATGCCGCTTGCGACTCCTTGCTGCAGCAGTAG
CCTCATGTGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGGGAAGAAG
ACGGCGGTTGATAAATTAAGAGGAAGAGGAGGAGGAGGCGATGTCGATGG
ACTTTTTGGAAGAGGAAGACGAGCTAGAGGGATTGGATAAAATTTTCGAA
GGCGGGAGTGATGGGTACAGTCGTGGAGACGAGGACATGTTTGCGACCCC
TCCCGCAGCAACAACTCCCGTTTCACAACCCGCCATCTCCATACTCTTCC
TCTTCTCCCGCTCACTTTTTCTCTCCCCGTCATCGCCGAGCCACCAGCTC
TCCTCTCGCCTTTGGACTTGCCCCCTCCCTCCCGTGCAACGGGCACAGCG
CCACCCTCCACCTGCGCAATCGCCATTTCCACGGTCGTACATGTGGCGCC
ATCACTTGCGGGTTGACCGTCCTCCGGGACCGCACCCTCCGTCGTCTCCT
CCCCTCACAATTCACGGGCGACCAATGGAAGTACTACTGGGGTATCACGG
AAAGCGATAAATTCGGAAAGATTTATGAAGCGGCCTCGTCCACCTTCTTC
GGGTTGTGGATCAGCTGGTTCTTGACCTTCCTGATAGGGCTACCAGCAGC
CACGATTTTGGGAACGGTATTTTTGTTTTATTGGATCCTGGCGCCGGGCC
TGGCAGCATATCGCCGGAATCTAAGTTTTAGGGGGGGTTATTTTGCACGG
CATCCGCGGGATGAGGGAGTGTTCGGGGCGCTGTTTAGTGGGAAGGTGGT
GAGGGTAGGCAGGATAACCCAGGCAGAGGAATATAATAGACCGGAGGCAA
TGGTCATGTGTGTGGAGGACGAAGAAGGGCGTAAATTGAGGGTGTATGCT
CCTGTGTTGCCTAGTTATAAGAGGGTGAGGCCGGGGATGCGATGCGAGGG
TTTGGTGTTGAGTGAGACGCCGGAGTTTGAGGAATTGCTGGGGGTGTCGG
ATTTGTTTGTGCCGGCCGCGGGGGCGTGGGTGGGAGAGTATCCCTACATA
GATAAGGTTCCCTTTAAGGCTTTTTTGGGAAACAAGCTGAAAATGATGCC
GCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCCTTGCTGCA
GCAGTAGCCTCATGTGAAGGAGGACGAAGACGAAGAGCGACGACGGCGGG
GAAGAAGACGGCGGTTGATAAATTAAGAGGAAGAGGAGGAGGAGGCGATG
TCGATGGACTTTTTGGAAGAGGAAGACGAGCTAGAGGGATTGGATAAAAT
TTTCGAAGGCGGGAGTGATGGGTACAGTCGTGGAGACGAGGACATGTTTG
CGACCCCTCCCGCAGCAACAACTCCCGTTTCACAACCCGCCATCTCCATA
CTCTTCCTCTTCTCCCGCTCACTTTTTCTCTCCCCGTCATCGCCGAGCCA
CCAGCTCTCCTCTCGCCTTTGGACTTGCCCCCTCCCTCCCGTGCAACGGG
CACAGCGCCACCCTCCACCTGCGCAATCGCCATTTCCACGGTCGTACATG
TGGCGCCATCACTTGCGGGTTGACCGTCCTCCGGGACCGCACCCTCCGTC
GTCTCCTCCCCTCACAATTCACGGGCGACCAATGGAAGTACTACTGGGGT
ATCACGGAAAGCGATAAATTCGGAAAGATTTATGAAGCGGCCTCGTCCAC
CTTCTTCGGGTTGTGGATCAGCTGGTTCTTGACCTTCCTGATAGGGCTAC
CAGCAGCCACGATTTTGGGAACGGTATTTTTGTTTTATTGGATCCTGGCG
CCGGGCCTGGCAGCATATCGCCGGAATCTAAGTTTTAGGGGGGGTTATTT
TGCACGGCATCCGCGGGATGAGGGAGTGTTCGGGGCGCTGTTTAGTGGGA
AGGTGGTGAGGGTAGGCAGGATAACCCAGGCAGAGGAATATAATAGACCG
GAGGCAATGGTCATGTGTGTGGAGGACGAAGAAGGGCGTAAATTGAGGGT
GTATGCTCCTGTGTTGCCTAGTTATAAGAGGGTGAGGCCGGGGATGCGAT
GCGAGGGTTTGGTGTTGAGTGAGACGCCGGAGTTTGAGGAATTGCTGGGG
GTGTCGGATTTGTTTGTGCCGGCCGCGGGGGCGTGGGTGGGAGAGTATCC
CTACATAGATAAGGTTCCCTTTAAGGCTTTTTTGGGAAACAAGCTGAAAA
TGATGCCGCCCTCAGCATTATCATCATCCATTATGCCGCTTGCGACTCCT
TGCTGCAGCAGTAGCCTCATGTGAAGGAGGACGAAGACGAAGAGCGACGA
CGGCGGGGAAGAAGACGGCGGTTGATAAATTAAGAGGAAGAGGAGGAGGA
GGCGATGTCGATGGACTTTTTGGAAGAGGAAGACGAGCTAGAGGGATTGG
ATAAAATTTTCGAAGGCGGGAGTGATGGGTACAGTCGTGGAGACGAGGAC
ATGTTTGCGACCCCTCCCGCAGCAACAACTCCCGTTTCACAACCCGCCAT
CTCCATACTCTTCCTCTTCTCCCGCTCACTTTTTCTCTCCCCGTCATCGC
CGAGCCACCAGCTCTCCTCTCGCCTTTGGACTTGCCCCCTCCCTCCCGTG
CAACGGGCACAGCGCCACCCTCCACCTGCGCAATCGCCATTTCCACGGTC
GTACATGTGGCGCCATCACTTGCGGGTTGACCGTCCTCCGGGACCGCACC
CTCCGTCGTCTCCTCCCCTCACAATTCACGGGCGACCAATGGAAGTACTA
CTGGGGTATCACGGAAAGCGATAAATTCGGAAAGATTTATGAAGCGGCCT
CGTCCACCTTCTTCGGGTTGTGGATCAGCTGGTTCTTGACCTTCCTGATA
GGGCTACCAGCAGCCACGATTTTGGGAACGGTATTTTTGTTTTATTGGAT
CCTGGCGCCGGGCCTGGCAGCATATCGCCGGAATCTAAGTTTTAGGGGGG
GTTATTTTGCACGGCATCCGCGGGATGAGGGAGTGTTCGGGGCGCTGTTT
AGTGGGAAGGTGGTGAGGGTAGGCAGGATAACCCAGGCAGAGGAATATAA
TAGACCGGAGGCAATGGTCATGTGTGTGGAGGACGAAGAAGGGCGTAAAT
TGAGGGTGTATGCTCCTGTGTTGCCTAGTTATAAGAGGGTGAGGCCGGGG
ATGCGATGCGAGGGTTTGGTGTTGAGTGAGACGCCGGAGTTTGAGGAATT
GCTGGGGGTGTCGGATTTGTTTGTGCCGGCCGCGGGGGCGTGGGTGGGAG
AGTATCCCTACATAGATAAGGTTCCCTTTAAGGCTTTTTTGGGAAACAAG
CTGAAAATGATGCCGCCCTCAGCATTATCATCATCCATTATGCCGCTTGC
GACTCCTTGCTGCAGCAGTAGCCTCATG back to top
|