jgi.p|Nanoce1779_2|415498, mRNA_3829 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|415498
Unique NamemRNA_3829
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1117
Alignment locationscaffold_8:139896..141012 -

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Properties
Property NameValue
TranscriptId415584
TrackFilteredModels2
ProteinId415498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:139896..141012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|415498gene_3829Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|415498mRNA_3829-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3829CDS_3829Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3829 ID=mRNA_3829|Name=jgi.p|Nanoce1779_2|415498|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
CTTGAATAGATGGTGATTTGTTTATTCATTTGTATGGGCGGCCCGCTGCA
TATGACACGAATCCTGCATAAACCACAGGGACCTTGTGCAAGTGCCACCA
AAAACACAAGTTCAAGCAAAAATCTCCATATCACATGTCTAGCTTGACGT
AGATAACAGCTTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTTCGCCATGCTTCGCTCCAATCGACCCACCCTCCCAACCCTCTTCTA
TGTGCTGGGCGGCTTGTTTGGCTTCCTCCTGCTCTTGTCCTCCCGGAGGC
TGCCAGTAGAGCTCTCTAGCCAAGGCCTTGGACCTCACTTGAGGAACTTC
CAGGAGCGGGCGGGAGAACAAGGGGGAAGGAGGGAGGATGGGGAGCTAGT
GTGGACAACGGAGAAAAGCTTACGGCCGCATGAAACTAAAGAGGAAAGGA
AGGACGGGGACCTTGAAAAGGAGAAGGGATCAGTAGAAGCGGGCAGTCAT
GTGAGCCATGGTGCGGCAGGGGCTCTTTCTGAGCAGGGTGGTAGCGCGAA
GACGGACCACGAAAAGGCACCCAGGGAGGACGAGGACGAGGAGTCGGCAG
CAGCAGCAGCAACAGCAATACCTCGAGAAGAAAATGAGGGAGGGGAGGAG
AAGCGGATCAAGGTCTTCATGGACTTTCAGCAATCCCGAGCGAGTTGGGG
CGTGGCGCATAATCGAGCCTTGGAGAGCGTACTCACGCAGCACCCTGAGG
CAGAGATCGTGGTTCTGGTGTCGGCACCAGGTGGGACGAAAAATAGGGAT
AGGGCTAGGGGGAGGGAAAGCATGTCTTGCATGCGGCTCCATTCCCTTCC
TATGCGCTGACCTTTCCTCCCTCCCTCCCTCCTCCCTTCCTCCCTTCCTC
CCTTCCTTTCTCCCTCACTCCCTCCCTCTTTCCCTCCTTTAGACTTATAC
AAGAAGTACCATTACGCGGATGCATTGGGCAGACCATTCTTCCAGAAATA
TTTCAAGAGGGGCTATAACGTTACCATCCAGCCCGTGAATGAAAACACTT
TCCTCGCCGAGGGGATGGACGAAGGTAGGTAGGTAGGTAGGGAGGGAGGA
AGGGAAGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|415498

>mRNA_3829-protein ID=mRNA_3829-protein|Name=jgi.p|Nanoce1779_2|415498|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MLRSNRPTLPTLFYVLGGLFGFLLLLSSRRLPVELSSQGLGPHLRNFQER
AGEQGGRREDGELVWTTEKSLRPHETKEERKDGDLEKEKGSVEAGSHVSH
GAAGALSEQGGSAKTDHEKAPREDEDEESAAAAATAIPREENEGGEEKRI
KVFMDFQQSRASWGVAHNRALESVLTQHPEAEIVVLVSAPGGTKNRDRAR
GRESMSCMRLHSLPMR*
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mRNA from alignment at scaffold_8:139896..141012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3829 ID=mRNA_3829|Name=jgi.p|Nanoce1779_2|415498|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_8:139896..141012- (Nannochloropsis oceanica)
CTTGAATAGATGGTGATTTGTTTATTCATTTGTATGGGCGGCCCGCTGCA
TATGACACGAATCCTGCATAAACCACAGGGACCTTGTGCAAGTGCCACCA
AAAACACAAGTTCAAGCAAAAATCTCCATATCACATGTCTAGCTTGACGT
AGATAACAGCTTCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTTCGCCATGCTTCGCTCCAATCGACCCACCCTCCCAACCCTCTTCTA
TGTGCTGGGCGGCTTGTTTGGCTTCCTCCTGCTCTTGTCCTCCCGGAGGC
TGCCAGTAGAGCTCTCTAGCCAAGGCCTTGGACCTCACTTGAGGAACTTC
CAGGAGCGGGCGGGAGAACAAGGGGGAAGGAGGGAGGATGGGGAGCTAGT
GTGGACAACGGAGAAAAGCTTACGGCCGCATGAAACTAAAGAGGAAAGGA
AGGACGGGGACCTTGAAAAGGAGAAGGGATCAGTAGAAGCGGGCAGTCAT
GTGAGCCATGGTGCGGCAGGGGCTCTTTCTGAGCAGGGTGGTAGCGCGAA
GACGGACCACGAAAAGGCACCCAGGGAGGACGAGGACGAGGAGTCGGCAG
CAGCAGCAGCAACAGCAATACCTCGAGAAGAAAATGAGGGAGGGGAGGAG
AAGCGGATCAAGGTCTTCATGGACTTTCAGCAATCCCGAGCGAGTTGGGG
CGTGGCGCATAATCGAGCCTTGGAGAGCGTACTCACGCAGCACCCTGAGG
CAGAGATCGTGGTTCTGGTGTCGGCACCAGGTGGGACGAAAAATAGGGAT
AGGGCTAGGGGGAGGGAAAGCATGTCTTGCATGCGGCTCCATTCCCTTCC
TATGCGCTGACCTTTCCTCCCTCCCTCCCTCCTCCCTTCCTCCCTTCCTC
CCTTCCTTTCTCCCTCACTCCCTCCCTCTTTCCCTCCTTTAGACTTATAC
AAGAAGTACCATTACGCGGATGCATTGGGCAGACCATTCTTCCAGAAATA
TTTCAAGAGGGGCTATAACGTTACCATCCAGCCCGTGAATGAAAACACTT
TCCTCGCCGAGGGGATGGACGAAGGTAGGTAGGTAGGTAGGGAGGGAGGA
AGGGAAGGAGGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_8:139896..141012-

>mRNA_3829 ID=mRNA_3829|Name=jgi.p|Nanoce1779_2|415498|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_8:139896..141012- (Nannochloropsis oceanica)
ATGCTTCGCTCCAATCGACCCACCCTCCCAACCCTCTTCTATGTGCTGGG
CGGCTTGTTTGGCTTCCTCCTGCTCTTGTCCTCCCGGAGGCTGCCAGTAG
AGCTCTCTAGCCAAGGCCTTGGACCTCACTTGAGGAACTTCCAGGAGCGG
GCGGGAGAACAAGGGGGAAGGAGGGAGGATGGGGAGCTAGTGTGGACAAC
GGAGAAAAGCTTACGGCCGCATGAAACTAAAGAGGAAAGGAAGGACGGGG
ACCTTGAAAAGGAGAAGGGATCAGTAGAAGCGGGCAGTCATGTGAGCCAT
GGTGCGGCAGGGGCTCTTTCTGAGCAGGGTGGTAGCGCGAAGACGGACCA
CGAAAAGGCACCCAGGGAGGACGAGGACGAGGAGTCGGCAGCAGCAGCAG
CAACAGCAATACCTCGAGAAGAAAATGAGGGAGGGGAGGAGAAGCGGATC
AAGGTCTTCATGGACTTTCAGCAATCCCGAGCGAGTTGGGGCGTGGCGCA
TAATCGAGCCTTGGAGAGCGTACTCACGCAGCACCCTGAGGCAGAGATCG
TGGTTCTGGTGTCGGCACCAGGTGGGACGAAAAATAGGGATAGGGCTAGG
GGGAGGGAAAGCATGTCTTGCATGCGGCTCCATTCCCTTCCTATGCGCTG
A
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Synonyms
Publications