jgi.p|Nanoce1779_2|585463, mRNA_3820 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585463
Unique Name	mRNA_3820
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	877
Alignment location	scaffold_8:110927..112356 +

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Properties


Property Name	Value
TranscriptId	585549
Track	FilteredModels2
ProteinId	585463

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:110927..112356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585463	gene_3820	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585463	mRNA_3820-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3820	CDS_3820	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:110927..112356+
coding sequence from alignment at scaffold_8:110927..112356+

mRNA sequence

>mRNA_3820 ID=mRNA_3820|Name=jgi.p|Nanoce1779_2|585463|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
AGGGAGGGAGGGAGGGAGGGAGGAGAGTGTATTCGACAGGAGTGGTAGGC
ATATCTTACAGTCAATGCAAAATGCACTTCTCTCGTAGCTGCAATCCAAA
TCGATCCTTTGGTCTCATCATCCCCTTTCTACAACCTGGCATCTCTCCTT
CCATTTTTCCCAGCTCGTGACCCGCGGCGGCAAGGAGTACATGATCGGCC
TGCCCATTGACACCCCTGTGGTAGTAGTGGACGACAAGATGAATGCCTTG
GAGATGGGCTTTGACAAGCGCCTCCCCAGTATGCTCTCCACGGTGGAAGC
TACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCGGGCACCTTGA
CCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGAGAGGGAGGAC
GAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGCCCTTTGAACA
GAAGATCGACCCTGACTTTGCCGACCGCCCTGCGCCCCCGCCCGGGTCCA
CAAACGACCCTCCATTCTACGAGTTTGACGCGCGCGACGAGAGCTACCAG
GAGGACGAGGAGGAGGACATGGAGGATATGGCCGAGCCCATCTGTGATTT
TGCCCATGAGGGCAAGACCTTCACGCTCATGAAGTTCGTCCAACCGTACT
TTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATGGGAACTACTG
ATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGGAGAGCGACCT
GGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAAAGAACCCTCA
GAGGGAGATAAGGGAGGGAGGGAGGGAGGGAATGAGGGAGGGCTGGGCCT
CGTTATAGACAAAATGCAAGCGTAGAT

protein sequence of jgi.p|Nanoce1779_2|585463

>mRNA_3820-protein ID=mRNA_3820-protein|Name=jgi.p|Nanoce1779_2|585463|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MIGLPIDTPVVVVDDKMNALEMGFDKRLPSMLSTVEATLKEMGATLVRSA
GTLTIEGDVEIYDEEGEREDEDEDEEGDGPDSLPFEQKIDPDFADRPAPP
PGSTNDPPFYEFDARDESYQEDEEEDMEDMAEPICDFAHEGKTFTLMKFV
QPYFVVAQRAAGAEGSWELLMGNQAEQVFDWVLESDLDYEFQLLEDENQ*

mRNA from alignment at scaffold_8:110927..112356+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3820 ID=mRNA_3820|Name=jgi.p|Nanoce1779_2|585463|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp|location=Sequence derived from alignment at scaffold_8:110927..112356+ (Nannochloropsis oceanica)
AGGGAGGGAGGGAGGGAGGGAGGAGAGTGTATTCGACAGGAGTGGTAGGC
ATATCTTACAGTCAATGCAAAATGCACTTCTCTCGTAGCTGCAATCCAAA
TCGATCCTTTGGTCTCATCATCCCCTTTCTACAACCTGGCATCTCTCATC
TCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCATTTTTCCCAGCTCGTG
ACCCGCGGCGGCAAGGAGTACATGATCGGCCTGCCCATTGACACCCCTGT
GGTAGTAGTGGACGACAAGATGAATGCCTTGGAGATGGGCTTTGACAAGC
GCCTCCCCAGTATGCTCTCCACGGTACGTCTTCCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTTTTTGTACCCCACGATCGCATGAGAG
CAAGGGTCACACTCACCCCTCCCTCCCTCCCTCCCTCCCTCCCCGCCTGC
CTCTTGCAGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCG
GTCGGCGGGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGG
AGGGCGAGAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGAT
TCCTTGCCCTTTGAACAGAAGGTGCGGAGGGAGGGAGGGGAAGGCGGGAA
GAGGGAGGGAGGGAAGGAGGGTGAGTCAAAGGAGGCCCAAAACCGGAAGG
GAAAACACGTATCCACCTCCCTCCCTCCCTCCCTCTCAGATCGACCCTGA
CTTTGCCGACCGCCCTGCGCCCCCGCCCGGGTCCACAAACGACCCTCCAT
TCTACGAGTTTGACGCGCGCGACGAGAGCTACCAGGAGGACGAGGAGGAG
GACATGGAGGATATGGCCGAGCCCATCTGTGATTTTGCCCATGAGGTACG
CCCTCCCTCCCTCCCTCCCTCCCTCACAAGCTTTTGTCCGAGCCGACGCC
TACTCCTTCTTGCTGATCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCCCCTTGCCAGGGCAAGACCTTCACGCTCATGAAGTTCGTCCAACCGT
ACTTTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATGGGAACTA
CTGATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGGAGAGCGG
TGAGTCCCCCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTTCTTCCTTGAGATGGAAAGAGCCCCGTTTCTGCCTTTTCACTGATG
TCGCCTCTGATATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGA
CCTGGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAAAGAACCC
TCAGAGGGAGATAAGGGAGGGAGGGAGGGAGGGAATGAGGGAGGGCTGGG
CCTCGTTATAGACAAAATGCAAGCGTAGAT

Coding sequence (CDS) from alignment at scaffold_8:110927..112356+

>mRNA_3820 ID=mRNA_3820|Name=jgi.p|Nanoce1779_2|585463|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_8:110927..112356+ (Nannochloropsis oceanica)
ATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTAGTGGACGACAAGAT
GAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCCCAGTATGCTCTCCA
CGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGATCGACCCTGACTTTGCCGACCGCCCTGCGCCCCCG
CCCGGGTCCACAAACGACCCTCCATTCTACGAGTTTGACGCGCGCGACGA
GAGCTACCAGGAGGACGAGGAGGAGGACATGGAGGATATGGCCGAGCCCA
TCTGTGATTTTGCCCATGAGGGCAAGACCTTCACGCTCATGAAGTTCGTC
CAACCGTACTTTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATG
GGAACTACTGATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGG
AGAGCGACCTGGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAA
ATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTAGTGGACGACAAGAT
GAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCCCAGTATGCTCTCCA
CGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGATCGACCCTGACTTTGCCGACCGCCCTGCGCCCCCG
CCCGGGTCCACAAACGACCCTCCATTCTACGAGTTTGACGCGCGCGACGA
GAGCTACCAGGAGGACGAGGAGGAGGACATGGAGGATATGGCCGAGCCCA
TCTGTGATTTTGCCCATGAGGGCAAGACCTTCACGCTCATGAAGTTCGTC
CAACCGTACTTTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATG
GGAACTACTGATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGG
AGAGCGACCTGGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAA
ATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTAGTGGACGACAAGAT
GAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCCCAGTATGCTCTCCA
CGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGATCGACCCTGACTTTGCCGACCGCCCTGCGCCCCCG
CCCGGGTCCACAAACGACCCTCCATTCTACGAGTTTGACGCGCGCGACGA
GAGCTACCAGGAGGACGAGGAGGAGGACATGGAGGATATGGCCGAGCCCA
TCTGTGATTTTGCCCATGAGGGCAAGACCTTCACGCTCATGAAGTTCGTC
CAACCGTACTTTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATG
GGAACTACTGATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGG
AGAGCGACCTGGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAA
ATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTAGTGGACGACAAGAT
GAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCCCAGTATGCTCTCCA
CGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGATCGACCCTGACTTTGCCGACCGCCCTGCGCCCCCG
CCCGGGTCCACAAACGACCCTCCATTCTACGAGTTTGACGCGCGCGACGA
GAGCTACCAGGAGGACGAGGAGGAGGACATGGAGGATATGGCCGAGCCCA
TCTGTGATTTTGCCCATGAGGGCAAGACCTTCACGCTCATGAAGTTCGTC
CAACCGTACTTTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATG
GGAACTACTGATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGG
AGAGCGACCTGGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAA
ATGATCGGCCTGCCCATTGACACCCCTGTGGTAGTAGTGGACGACAAGAT
GAATGCCTTGGAGATGGGCTTTGACAAGCGCCTCCCCAGTATGCTCTCCA
CGGTGGAAGCTACCTTGAAGGAAATGGGTGCGACGCTCGTGCGGTCGGCG
GGCACCTTGACCATCGAGGGGGACGTGGAGATCTACGACGAGGAGGGCGA
GAGGGAGGACGAGGACGAGGACGAGGAGGGCGATGGGCCAGATTCCTTGC
CCTTTGAACAGAAGATCGACCCTGACTTTGCCGACCGCCCTGCGCCCCCG
CCCGGGTCCACAAACGACCCTCCATTCTACGAGTTTGACGCGCGCGACGA
GAGCTACCAGGAGGACGAGGAGGAGGACATGGAGGATATGGCCGAGCCCA
TCTGTGATTTTGCCCATGAGGGCAAGACCTTCACGCTCATGAAGTTCGTC
CAACCGTACTTTGTGGTGGCCCAGCGGGCGGCAGGAGCCGAGGGGTCATG
GGAACTACTGATGGGCAACCAAGCCGAGCAAGTCTTCGACTGGGTGCTGG
AGAGCGACCTGGACTACGAGTTCCAGCTACTGGAGGACGAGAATCAGTAA

Synonyms

Publications