jgi.p|Nanoce1779_2|577157, mRNA_382 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577157
Unique Name	mRNA_382
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1351
Alignment location	scaffold_3:948358..950144 +

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Properties


Property Name	Value
TranscriptId	577243
Track	FilteredModels2
ProteinId	577157

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:948358..950144 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577157	gene_382	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577157	mRNA_382-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_382	CDS_382	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:948358..950144+
coding sequence from alignment at scaffold_3:948358..950144+

mRNA sequence

>mRNA_382 ID=mRNA_382|Name=jgi.p|Nanoce1779_2|577157|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp
CCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATCAAT
AGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCCTGC
TCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCACAG
TACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAAAGA
GCCCGGCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCG
CCAGCTGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTC
AAGAAGGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACA
ACGGAAAGGAGCGATTGTTGCCCACTTTGGCGAGGCGTACCAAGCACTGG
AAGTAAATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATT
TTGCAGCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAA
ATTACCCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATG
CGTATCTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAG
TATCCTAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTT
TGCAGAGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAG
AGGAAGGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTC
TAGGTTTGTGGGATAGGATGTGGATGGGAGGAAGGGGTGGGTTGGTTTAG
AGAGTCTGCGTGTCTAGCAGGGATATTGGCGGAGGGAATGGAAGAAAGAA
ACGACAGGGGGAGAGGAGACTCACGTGACACGACAAGCCGGTATTTTTAT
AGCAGTAGCGAAAGCTAATCAAAGCGATGGAAAGACTTGGTTTGGTGCAC
CTATTTGACGTTTCCATAGATGTCCAATCTTCCTTTTGAAGTTCGCCCAA
AAAACAGCCGCCTGAGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGACAG
GACAAGTGCATACGTGTTAAGAGGGAGGCGGGAGTATATATGGTAAGAGG
ACAGGCCCTTTGCTAAGCTTTCATACAGGAATGAAAACTTGTCGGCCTGT
AAAAGGCTGCGCGATGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTCCCT
CCGGAAGTTGCCTTAGAACTCATACCCCACCCCAGCGCCCCTCCCTCCCC
TCCTTTTTTTCTTCCCTCCCCCCCTTGGAAGAGCACGCCCATGGCCTGGA
GGGGGATTGATGAGAAGCAAAATAAGGAAAAAAGAAAACACGACATTAAA
C

protein sequence of jgi.p|Nanoce1779_2|577157

>mRNA_382-protein ID=mRNA_382-protein|Name=jgi.p|Nanoce1779_2|577157|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MRGCWGLASFSPILLLLCLAKSAEAQAYGQPQYQQQRPRAEFRDIGRKEP
GKFWGMMKTGAVGAVASWSFGQLYYRWQAKRLKKAHQKKSDKLIASYQQR
KGAIVAHFGEAYQALEVNADYVDSLIAQLEGILQHPETDPNKRKIAEFKL
PDANNDNKISRAEFDAYLRSYFAAHPELAEVEYPSFDDFDLDGSGLVSFA
EWKKFIEDLEKSQQAEEGLLSAGGGGGRGGRL*

mRNA from alignment at scaffold_3:948358..950144+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_382 ID=mRNA_382|Name=jgi.p|Nanoce1779_2|577157|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp|location=Sequence derived from alignment at scaffold_3:948358..950144+ (Nannochloropsis oceanica)
CCCGTCTCACAATAGATTTGGAGAGCAAGCCCGGGGGCACCTTCATCAAT
AGGAATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCCTGC
TCCTCTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCACAG
TACCAGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAAAGA
GCCCGGCAAGTACGTGTTGGACGGGAAGGGATGTTGAAGGCGCTGGGAGC
GTGGGGGAATGGGTGAAATTTGGTGTTCTAATGCGTCTCTTGTACTTGAA
AAAAAGCTCTTCAAATAGCCCTCTGGGATTGTTTTGCAATCCTCCTCATC
TTTTGAATCTTGTGTCCTTTCAGCCTCGAACCGGCAGTCTCGTGACGCGG
AGGGCATGTATGTGTGCGGGACATGGCCCCTTTTCCTTTCCTTTTCCCCT
TTACCTTTGCGTCAGTATCTCCTGTGTATAAAGCGGGGTCGGTTTCTTAA
ACTTCTAGTAGTCAGGGCATTTTTGGTCTGGAGAGATTTGATCACTACAG
TACCCTGTTCCTGTGGAGTCATGCACACACACGCAGACGTCCCAATCCTT
CCTCCCTCTCTCCCGCCCTCTTTTCCTTCTTTCCCCTCTCCATAGATTTT
GGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAGCTGGAGCTTC
GGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGAAGGCCCACCA
AAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGGAAAGGAGCGA
TTGTTGCCCACTTTGGCGAGGCGTACCAAGCACTGGAAGTAAATGCTGAC
TATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGCAGCACCCCGA
GACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTACCCGATGCGA
ATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTATCTGAGGTCG
TATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATCCTAGTTTTGA
TGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCAGAGTGGAAGA
AGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGAAGGCCTGCTT
TCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAGGTTTGTGGGAT
AGGATGTGGATGGGAGGAAGGGGTGGGTTGGTTTAGAGAGTCTGCGTGTC
TAGCAGGGATATTGGCGGAGGGAATGGAAGAAAGAAACGACAGGGGGAGA
GGAGACTCACGTGACACGACAAGCCGGTATTTTTATAGCAGTAGCGAAAG
CTAATCAAAGCGATGGAAAGACTTGGTTTGGTGCACCTATTTGACGTTTC
CATAGATGTCCAATCTTCCTTTTGAAGTTCGCCCAAAAAACAGCCGCCTG
AGGAGGAAAGGAGGGAGGAAGGGCCGGAGAGGACAGGACAAGTGCATACG
TGTTAAGAGGGAGGCGGGAGTATATATGGTAAGAGGACAGGCCCTTTGCT
AAGCTTTCATACAGGAATGAAAACTTGTCGGCCTGTAAAAGGCTGCGCGA
TGATCAGGCGAGCGCTTTCTTTTTCTCCTTCTCCCTCCGGAAGTTGCCTT
AGAACTCATACCCCACCCCAGCGCCCCTCCCTCCCCTCCTTTTTTTCTTC
CCTCCCCCCCTTGGAAGAGCACGCCCATGGCCTGGAGGGGGATTGATGAG
AAGCAAAATAAGGAAAAAAGAAAACACGACATTAAAC

Coding sequence (CDS) from alignment at scaffold_3:948358..950144+

>mRNA_382 ID=mRNA_382|Name=jgi.p|Nanoce1779_2|577157|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_3:948358..950144+ (Nannochloropsis oceanica)
ATGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCCTGCTCCT
CTGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCACAGTACC
AGCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAAAGAGCCC
GGCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAG
CTGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGA
AGGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGG
AAAGGAGCGATTGTTGCCCACTTTGGCGAGGCGTACCAAGCACTGGAAGT
AAATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGC
AGCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTA
CCCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTA
TCTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATC
CTAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCA
GAGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGA
AGGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAGA
TGAGGGGCTGCTGGGGCCTTGCATCCTTCTCCCCCATCCTCCTGCTCCTC
TGCTTGGCTAAGAGTGCCGAAGCGCAAGCCTATGGGCAACCACAGTACCA
GCAGCAGCGACCACGGGCTGAATTTCGGGACATTGGGCGGAAAGAGCCCG
GCAAATTTTGGGGCATGATGAAAACAGGCGCGGTCGGGGCAGTCGCCAGC
TGGAGCTTCGGCCAGCTCTACTACCGGTGGCAAGCCAAACGCCTCAAGAA
GGCCCACCAAAAAAAAAGCGACAAGCTAATTGCCTCCTACCAACAACGGA
AAGGAGCGATTGTTGCCCACTTTGGCGAGGCGTACCAAGCACTGGAAGTA
AATGCTGACTATGTTGATTCCTTAATTGCGCAACTAGAAGGAATTTTGCA
GCACCCCGAGACGGACCCCAATAAGAGGAAAATCGCCGAGTTTAAATTAC
CCGATGCGAATAACGACAATAAAATCTCACGAGCAGAGTTTGATGCGTAT
CTGAGGTCGTATTTTGCCGCCCACCCGGAGCTTGCTGAGGTGGAGTATCC
TAGTTTTGATGATTTTGATTTGGATGGGTCGGGGTTGGTGTCGTTTGCAG
AGTGGAAGAAGTTTATTGAGGATTTGGAAAAGAGTCAGCAGGCAGAGGAA
GGCCTGCTTTCGGCGGGGGGGGGAGGGGGAAGAGGGGGACGGCTCTAG

Synonyms

Publications