jgi.p|Nanoce1779_2|414935, mRNA_3819 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|414935
Unique NamemRNA_3819
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length634
Alignment locationscaffold_8:109877..110510 +

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Properties
Property NameValue
TranscriptId415021
TrackFilteredModels2
ProteinId414935
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:109877..110510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|414935gene_3819Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|414935mRNA_3819-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3819CDS_3819Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3819 ID=mRNA_3819|Name=jgi.p|Nanoce1779_2|414935|organism=Nannochloropsis oceanica|type=mRNA|length=634bp
AAAGACAGGAGAGGAGAAGAAGGATAATCAATAGCACGAGAACGAAGGAG
GGGAAGAAGGAGGAGGAAGAGAGGGAAGGATGGAAGGAGGCAGGGAAAGA
AGGAGAGGAATCCTCTCAGACCTAGGGCCCCAGGCCAGCACCGACTTCAT
GCTATTGACCCCCACTTCTTTTTCTTCTTTTATTTGTATTTTATTTTTAT
ATGCTGTGTGTGTGAGCACGGAGGGCAAAGTGTGTAGATATGGGCCGAGG
AGATGCAAGCAAGTGGATTCGGAGCGAACTCTTCCTTTCCCTCGTCGTTA
CCCCCCCTTGCCAAATTCCAGCCCGACACTTACACACATCATGCACACAC
ACACACAAACAACAACAACGATGATAGGCCACCTTATCATGAAGCTCTCC
GTGGCCTTGGCCCTTTTTGCCCCGTCCCTCTCCTCGGCCTTTCTGTTGCC
TGCCGGCCTCCCCTCCCACCAGTCGACGCACCAGCAACACCAGCATCGAT
GTGCCGCATCGGGTGCGTCTGCCAGAATAAAAATTGGGGGATACATGATC
TAAATCCATGCAATATCACATGTCCTAGTGTGTTCACATGCACCGGCCAG
CGTGCATAAATCGTGCCATCTTTTCCCCTCGATC
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protein sequence of jgi.p|Nanoce1779_2|414935

>mRNA_3819-protein ID=mRNA_3819-protein|Name=jgi.p|Nanoce1779_2|414935|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MEGGRERRRGILSDLGPQASTDFMLLTPTSFSSFICILFLYAVCVSTEGK
VCRYGPRRCKQVDSERTLPFPRRYPPLPNSSPTLTHIMHTHTQTTTTMIG
HLIMKLSVALALFAPSLSSAFLLPAGLPSHQSTHQQHQHRCAASGASARI
KIGGYMI*
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mRNA from alignment at scaffold_8:109877..110510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3819 ID=mRNA_3819|Name=jgi.p|Nanoce1779_2|414935|organism=Nannochloropsis oceanica|type=mRNA|length=634bp|location=Sequence derived from alignment at scaffold_8:109877..110510+ (Nannochloropsis oceanica)
AAAGACAGGAGAGGAGAAGAAGGATAATCAATAGCACGAGAACGAAGGAG
GGGAAGAAGGAGGAGGAAGAGAGGGAAGGATGGAAGGAGGCAGGGAAAGA
AGGAGAGGAATCCTCTCAGACCTAGGGCCCCAGGCCAGCACCGACTTCAT
GCTATTGACCCCCACTTCTTTTTCTTCTTTTATTTGTATTTTATTTTTAT
ATGCTGTGTGTGTGAGCACGGAGGGCAAAGTGTGTAGATATGGGCCGAGG
AGATGCAAGCAAGTGGATTCGGAGCGAACTCTTCCTTTCCCTCGTCGTTA
CCCCCCCTTGCCAAATTCCAGCCCGACACTTACACACATCATGCACACAC
ACACACAAACAACAACAACGATGATAGGCCACCTTATCATGAAGCTCTCC
GTGGCCTTGGCCCTTTTTGCCCCGTCCCTCTCCTCGGCCTTTCTGTTGCC
TGCCGGCCTCCCCTCCCACCAGTCGACGCACCAGCAACACCAGCATCGAT
GTGCCGCATCGGGTGCGTCTGCCAGAATAAAAATTGGGGGATACATGATC
TAAATCCATGCAATATCACATGTCCTAGTGTGTTCACATGCACCGGCCAG
CGTGCATAAATCGTGCCATCTTTTCCCCTCGATC
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Coding sequence (CDS) from alignment at scaffold_8:109877..110510+

>mRNA_3819 ID=mRNA_3819|Name=jgi.p|Nanoce1779_2|414935|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_8:109877..110510+ (Nannochloropsis oceanica)
ATGGAAGGAGGCAGGGAAAGAAGGAGAGGAATCCTCTCAGACCTAGGGCC
CCAGGCCAGCACCGACTTCATGCTATTGACCCCCACTTCTTTTTCTTCTT
TTATTTGTATTTTATTTTTATATGCTGTGTGTGTGAGCACGGAGGGCAAA
GTGTGTAGATATGGGCCGAGGAGATGCAAGCAAGTGGATTCGGAGCGAAC
TCTTCCTTTCCCTCGTCGTTACCCCCCCTTGCCAAATTCCAGCCCGACAC
TTACACACATCATGCACACACACACACAAACAACAACAACGATGATAGGC
CACCTTATCATGAAGCTCTCCGTGGCCTTGGCCCTTTTTGCCCCGTCCCT
CTCCTCGGCCTTTCTGTTGCCTGCCGGCCTCCCCTCCCACCAGTCGACGC
ACCAGCAACACCAGCATCGATGTGCCGCATCGGGTGCGTCTGCCAGAATA
AAAATTGGGGGATACATGATCTAA
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Synonyms
Publications