jgi.p|Nanoce1779_2|414637, mRNA_3816 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|414637
Unique Name	mRNA_3816
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1832
Alignment location	scaffold_8:95308..97272 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	414723
Track	FilteredModels2
ProteinId	414637

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:95308..97272 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|414637	gene_3816	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|414637	mRNA_3816-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3816	CDS_3816	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:95308..97272+
coding sequence from alignment at scaffold_8:95308..97272+

mRNA sequence

>mRNA_3816 ID=mRNA_3816|Name=jgi.p|Nanoce1779_2|414637|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
GTTCTGATTGTCCTTGTGCTGAGGACTCCTGGATACATGACTAAATCCTA
TCCCTTGTGCAAGGAGGGTAAATTAATATACGAGGTAACATGAAGATGCC
TCCGATCATCTGTCAGGGCGTGCTTGGGCGCGGCATCTTTGCTCCCCACA
ACGAGGGACCTCTAGTTTGACACGCATGCCTTTCTCTCACATCTCCTCCA
CGTGCACAGTGTACGAGGCAGCTTGTTGTCTGAAGGGGCAATGTGGATAT
TGGCTTATCGCCATAGGATGGTATCTTCTTCCTGTTGCTTGCTTCCTCTG
CTTCTCCTCCCTCGCCAGCACGTCGAAGGATTCCATCTTTCCCGCTTTCT
TGCGCGTTGCCCACATCGGCAAGTGTCAATGACCACCATTCCAAGGCCCG
TCGTCGATCGGCCCATCCTTCTCCATGGATCAATCTTTCCAAAGTCCACC
AATATTCTCCCTTCCCCTTCAAAGACTCCGAGCCATGCCCACTCTCATTC
CTTTTCTTCGTCTTCGTCCACAAGCATCAATGTAAAACCTTCCAGGGCTG
CTTCTACTGGTCAAGCGCACGCTCATCACCCTTACATTGAGCTTCTGCGA
CCACATAATGTGCTGCCATCGATGTGTCTTGTCTTGGTGGGCGCTTGGAT
AACCGCGCGTGATCTCCGTCGTGTTATCGACCCGGTGGTGGTCATGATGG
CCATTACCTCCGCTCTTGTCGCCGTAGGCTCTTGCGTGCTCAACGACTAT
TTCGACTTGAAGACCGACCGCATCAATAATCTGGAACGATCCCTTGTCCA
AGGCAGAGTCCGACCTCTCCATGCCCTTCTTCTGGCACTCGCATGCCTGA
GCATGGCCCTTTTCGTTGGCAACAGCGTTGTTCCGACCGGTACCAAGATA
AATGGTTTATTCTTTCTCTGTCGTCAAACTAGCGCAGTCCCCATGCTGGA
CCTTGCATCAGCAGGAGGAAAATATCCAGGAGCAGAAAATGTACAGCTTC
TCTTGCGTCTGCTGCGGCGTATCGTCTACATGGCTGTCCTTGCTGTATCA
CTTTACACGCCCCTTTTTAAGCCAATTCCCTTTCTTAAGAATGGCGTCGT
CTCCTTGGTGACGGCCGCCTCCGTGGTGCTTGGGGGCCTTGCGGCTCTCG
CCGTCTCAACCTGTTCATCTATTCCATCTTCCCTCCCTCCTTCCCTTCTC
GCCTCCGCTTCGGTCGTATTCTGTCATATGTATCATCGGGAAATTTTGAT
GGATATTGACGATACGGAGAGGGACAAGGCAGGCCAGATCCTTACCCTCC
CCCGGCTCTTCGGGAAGTCTCTCGCCCTCTCGCTGGGTGGGGCGCTCGTT
GCTCTAAGCACAGCGGTAAGCGGTTGGATTGTGTGGACCCAACACGGCCT
GAGGTTACCGTCGTTACCAATCTTTCAAGCAGGAGGGTTCAGGGGAGGAA
CAGGCGGAATTGCAGCTAGACTGGCAGGAGAGATGGGAATGGGGGTGATA
AGAGCATCAGCAGCGTGGTTTGCGCCCGTAGCAGTGTGTGTTGCAGGCTT
GAGTATTTGTGTGTACGATTGGCGGGTGGTGTGGATGAGGGGATTCCGTC
ATGAAGATGTCGATAAGGGCATTGCATGGTGCCCTCTGGCGATGGTCGTG
ATGCTGCTGTTGATGGGCACGGGGTGTAGTACATGATCTGATAGCTGAGC
ATGGCTGGAGGGAAAGACATTTGAGGATTTAAGTCAAAGGATACGCATAA
TAGACGCAGGCAGTCACGAATTTAAAACCAGAGGTTGTGCATATGGGAGG
GCAATGACAGAAGGGAAAAGGGGCAAGTCTTA

protein sequence of jgi.p|Nanoce1779_2|414637

>mRNA_3816-protein ID=mRNA_3816-protein|Name=jgi.p|Nanoce1779_2|414637|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MWILAYRHRMVSSSCCLLPLLLLPRQHVEGFHLSRFLARCPHRQVSMTTI
PRPVVDRPILLHGSIFPKSTNILPSPSKTPSHAHSHSFSSSSSTSINVKP
SRAASTGQAHAHHPYIELLRPHNVLPSMCLVLVGAWITARDLRRVIDPVV
VMMAITSALVAVGSCVLNDYFDLKTDRINNLERSLVQGRVRPLHALLLAL
ACLSMALFVGNSVVPTGTKINGLFFLCRQTSAVPMLDLASAGGKYPGAEN
VQLLLRLLRRIVYMAVLAVSLYTPLFKPIPFLKNGVVSLVTAASVVLGGL
AALAVSTCSSIPSSLPPSLLASASVVFCHMYHREILMDIDDTERDKAGQI
LTLPRLFGKSLALSLGGALVALSTAVSGWIVWTQHGLRLPSLPIFQAGGF
RGGTGGIAARLAGEMGMGVIRASAAWFAPVAVCVAGLSICVYDWRVVWMR
GFRHEDVDKGIAWCPLAMVVMLLLMGTGCST*

mRNA from alignment at scaffold_8:95308..97272+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3816 ID=mRNA_3816|Name=jgi.p|Nanoce1779_2|414637|organism=Nannochloropsis oceanica|type=mRNA|length=1965bp|location=Sequence derived from alignment at scaffold_8:95308..97272+ (Nannochloropsis oceanica)
GTTCTGATTGTCCTTGTGCTGAGGACTCCTGGATACATGACTAAATCCTA
TCCCTTGTGCAAGGAGGGTAAATTAATATACGAGGTAACATGAAGATGCC
TCCGATCATCTGTCAGGGCGTGCTTGGGCGCGGCATCTTTGCTCCCCACA
ACGAGGGACCTCTAGTTTGACACGCATGCCTTTCTCTCACATCTCCTCCA
CGTGCACAGTGTACGAGGCAGCTTGTTGTCTGAAGGGGCAATGTGGATAT
TGGCTTATCGCCATAGGATGGTATCTTCTTCCTGTTGCTTGCTTCCTCTG
CTTCTCCTCCCTCGCCAGCACGTCGAAGGATTCCATCTTTCCCGCTTTCT
TGCGCGTTGCCCACATCGGCAAGTGTCAATGACCACCATTCCAAGGCCCG
TCGTCGATCGGCCCATCCTTCTCCATGGATCAATCTTTCCAAAGTCCACC
AATATTCTCCCTTCCCCTTCAAAGACTCCGAGCCATGCCCACTCTCATTC
CTTTTCTTCGTCTTCGTCCACAAGCATCAATGTAAAACCTTCCAGGGCTG
CTTCTACTGGTCAAGCGCACGCTCATCACCCTTACATTGAGCTTCTGCGA
CCACATAATGTGCTGCCATCGATGTGTCTTGTCTTGGTGGGCGCTTGGAT
AACCGCGCGTGATCTCCGTCGTGTTATCGACCCGGTGGTGGTCATGATGG
GTAAGTGCCGGGCGTAGATCCACGGGAGTGCCGTCATTCATTGATTTTGT
CTCACGCGGGCATGTAGACAGCAGACAGTTCGTATCCTGTCCGTCTCTCC
CTCACTCCTATTACTACCCATACATATCCCCAGCCATTACCTCCGCTCTT
GTCGCCGTAGGCTCTTGCGTGCTCAACGACTATTTCGACTTGAAGACCGA
CCGCATCAATAATCTGGAACGATCCCTTGTCCAAGGCAGAGTCCGACCTC
TCCATGCCCTTCTTCTGGCACTCGCATGCCTGAGCATGGCCCTTTTCGTT
GGCAACAGCGTTGTTCCGACCGGTACCAAGATAAATGGTTTATTCTTTCT
CTGTCGTCAAACTAGCGCAGTCCCCATGCTGGACCTTGCATCAGCAGGAG
GAAAATATCCAGGAGCAGAAAATGTACAGCTTCTCTTGCGTCTGCTGCGG
CGTATCGTCTACATGGCTGTCCTTGCTGTATCACTTTACACGCCCCTTTT
TAAGCCAATTCCCTTTCTTAAGAATGGCGTCGTCTCCTTGGTGACGGCCG
CCTCCGTGGTGCTTGGGGGCCTTGCGGCTCTCGCCGTCTCAACCTGTTCA
TCTATTCCATCTTCCCTCCCTCCTTCCCTTCTCGCCTCCGCTTCGGTCGT
ATTCTGTCATATGTATCATCGGGAAATTTTGATGGATATTGACGATACGG
AGAGGGACAAGGCAGGCCAGATCCTTACCCTCCCCCGGCTCTTCGGGAAG
TCTCTCGCCCTCTCGCTGGGTGGGGCGCTCGTTGCTCTAAGCACAGCGGT
AAGCGGTTGGATTGTGTGGACCCAACACGGCCTGAGGTTACCGTCGTTAC
CAATCTTTCAAGCAGGAGGGTTCAGGGGAGGAACAGGCGGAATTGCAGCT
AGACTGGCAGGAGAGATGGGAATGGGGGTGATAAGAGCATCAGCAGCGTG
GTTTGCGCCCGTAGCAGTGTGTGTTGCAGGCTTGAGTATTTGTGTGTACG
ATTGGCGGGTGGTGTGGATGAGGGGATTCCGTCATGAAGATGTCGATAAG
GGCATTGCATGGTGCCCTCTGGCGATGGTCGTGATGCTGCTGTTGATGGG
CACGGGGTGTAGTACATGATCTGATAGCTGAGCATGGCTGGAGGGAAAGA
CATTTGAGGATTTAAGTCAAAGGATACGCATAATAGACGCAGGCAGTCAC
GAATTTAAAACCAGAGGTTGTGCATATGGGAGGGCAATGACAGAAGGGAA
AAGGGGCAAGTCTTA

Coding sequence (CDS) from alignment at scaffold_8:95308..97272+

>mRNA_3816 ID=mRNA_3816|Name=jgi.p|Nanoce1779_2|414637|organism=Nannochloropsis oceanica|type=CDS|length=2892bp|location=Sequence derived from alignment at scaffold_8:95308..97272+ (Nannochloropsis oceanica)
ATGTGGATATTGGCTTATCGCCATAGGATGGTATCTTCTTCCTGTTGCTT
GCTTCCTCTGCTTCTCCTCCCTCGCCAGCACGTCGAAGGATTCCATCTTT
CCCGCTTTCTTGCGCGTTGCCCACATCGGCAAGTGTCAATGACCACCATT
CCAAGGCCCGTCGTCGATCGGCCCATCCTTCTCCATGGATCAATCTTTCC
AAAGTCCACCAATATTCTCCCTTCCCCTTCAAAGACTCCGAGCCATGCCC
ACTCTCATTCCTTTTCTTCGTCTTCGTCCACAAGCATCAATGTAAAACCT
TCCAGGGCTGCTTCTACTGGTCAAGCGCACGCTCATCACCCTTACATTGA
GCTTCTGCGACCACATAATGTGCTGCCATCGATGTGTCTTGTCTTGGTGG
GCGCTTGGATAACCGCGCGTGATCTCCGTCGTGTTATCGACCCGGTGGTG
GTCATGATGGCCATTACCTCCGCTCTTGTCGCCGTAGGCTCTTGCGTGCT
CAACGACTATTTCGACTTGAAGACCGACCGCATCAATAATCTGGAACGAT
CCCTTGTCCAAGGCAGAGTCCGACCTCTCCATGCCCTTCTTCTGGCACTC
GCATGCCTGAGCATGGCCCTTTTCGTTGGCAACAGCGTTGTTCCGACCGG
TACCAAGATAAATGGTTTATTCTTTCTCTGTCGTCAAACTAGCGCAGTCC
CCATGCTGGACCTTGCATCAGCAGGAGGAAAATATCCAGGAGCAGAAAAT
GTACAGCTTCTCTTGCGTCTGCTGCGGCGTATCGTCTACATGGCTGTCCT
TGCTGTATCACTTTACACGCCCCTTTTTAAGCCAATTCCCTTTCTTAAGA
ATGGCGTCGTCTCCTTGGTGACGGCCGCCTCCGTGGTGCTTGGGGGCCTT
GCGGCTCTCGCCGTCTCAACCTGTTCATCTATTCCATCTTCCCTCCCTCC
TTCCCTTCTCGCCTCCGCTTCGGTCGTATTCTGTCATATGTATCATCGGG
AAATTTTGATGGATATTGACGATACGGAGAGGGACAAGGCAGGCCAGATC
CTTACCCTCCCCCGGCTCTTCGGGAAGTCTCTCGCCCTCTCGCTGGGTGG
GGCGCTCGTTGCTCTAAGCACAGCGGTAAGCGGTTGGATTGTGTGGACCC
AACACGGCCTGAGGTTACCGTCGTTACCAATCTTTCAAGCAGGAGGGTTC
AGGGGAGGAACAGGCGGAATTGCAGCTAGACTGGCAGGAGAGATGGGAAT
GGGGGTGATAAGAGCATCAGCAGCGTGGTTTGCGCCCGTAGCAGTGTGTG
TTGCAGGCTTGAGTATTTGTGTGTACGATTGGCGGGTGGTGTGGATGAGG
GGATTCCGTCATGAAGATGTCGATAAGGGCATTGCATGGTGCCCTCTGGC
GATGGTCGTGATGCTGCTGTTGATGGGCACGGGGTGTAGTACATGAATGT
GGATATTGGCTTATCGCCATAGGATGGTATCTTCTTCCTGTTGCTTGCTT
CCTCTGCTTCTCCTCCCTCGCCAGCACGTCGAAGGATTCCATCTTTCCCG
CTTTCTTGCGCGTTGCCCACATCGGCAAGTGTCAATGACCACCATTCCAA
GGCCCGTCGTCGATCGGCCCATCCTTCTCCATGGATCAATCTTTCCAAAG
TCCACCAATATTCTCCCTTCCCCTTCAAAGACTCCGAGCCATGCCCACTC
TCATTCCTTTTCTTCGTCTTCGTCCACAAGCATCAATGTAAAACCTTCCA
GGGCTGCTTCTACTGGTCAAGCGCACGCTCATCACCCTTACATTGAGCTT
CTGCGACCACATAATGTGCTGCCATCGATGTGTCTTGTCTTGGTGGGCGC
TTGGATAACCGCGCGTGATCTCCGTCGTGTTATCGACCCGGTGGTGGTCA
TGATGGCCATTACCTCCGCTCTTGTCGCCGTAGGCTCTTGCGTGCTCAAC
GACTATTTCGACTTGAAGACCGACCGCATCAATAATCTGGAACGATCCCT
TGTCCAAGGCAGAGTCCGACCTCTCCATGCCCTTCTTCTGGCACTCGCAT
GCCTGAGCATGGCCCTTTTCGTTGGCAACAGCGTTGTTCCGACCGGTACC
AAGATAAATGGTTTATTCTTTCTCTGTCGTCAAACTAGCGCAGTCCCCAT
GCTGGACCTTGCATCAGCAGGAGGAAAATATCCAGGAGCAGAAAATGTAC
AGCTTCTCTTGCGTCTGCTGCGGCGTATCGTCTACATGGCTGTCCTTGCT
GTATCACTTTACACGCCCCTTTTTAAGCCAATTCCCTTTCTTAAGAATGG
CGTCGTCTCCTTGGTGACGGCCGCCTCCGTGGTGCTTGGGGGCCTTGCGG
CTCTCGCCGTCTCAACCTGTTCATCTATTCCATCTTCCCTCCCTCCTTCC
CTTCTCGCCTCCGCTTCGGTCGTATTCTGTCATATGTATCATCGGGAAAT
TTTGATGGATATTGACGATACGGAGAGGGACAAGGCAGGCCAGATCCTTA
CCCTCCCCCGGCTCTTCGGGAAGTCTCTCGCCCTCTCGCTGGGTGGGGCG
CTCGTTGCTCTAAGCACAGCGGTAAGCGGTTGGATTGTGTGGACCCAACA
CGGCCTGAGGTTACCGTCGTTACCAATCTTTCAAGCAGGAGGGTTCAGGG
GAGGAACAGGCGGAATTGCAGCTAGACTGGCAGGAGAGATGGGAATGGGG
GTGATAAGAGCATCAGCAGCGTGGTTTGCGCCCGTAGCAGTGTGTGTTGC
AGGCTTGAGTATTTGTGTGTACGATTGGCGGGTGGTGTGGATGAGGGGAT
TCCGTCATGAAGATGTCGATAAGGGCATTGCATGGTGCCCTCTGGCGATG
GTCGTGATGCTGCTGTTGATGGGCACGGGGTGTAGTACATGA

Synonyms

Publications