jgi.p|Nanoce1779_2|585438, mRNA_3814 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585438
Unique Name	mRNA_3814
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	939
Alignment location	scaffold_8:76509..78040 -

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Properties


Property Name	Value
TranscriptId	585524
Track	FilteredModels2
ProteinId	585438

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:76509..78040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585438	gene_3814	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585438	mRNA_3814-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3814	CDS_3814	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:76509..78040-
coding sequence from alignment at scaffold_8:76509..78040-

mRNA sequence

>mRNA_3814 ID=mRNA_3814|Name=jgi.p|Nanoce1779_2|585438|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
CCTCCTCCTCCTCCTCCTCCCTTCACCTCCTCCCCCTCGACCACCCCACC
CTCCGCATGGGCATGCTCCTCGCTGCCGGCCACATCACACGAGCTGTCAA
GTGGGCGCAGGGCGTGGACCCTTCCCTCCACGATGACGTGGCCTTGCAAC
TCTTCGAGCCCCGTGGACCTGCTGCAGTGGATGTGGCTGTCAGATCCCTT
CCAGGCCTGTCGTTGGCATTGGCCATCGATCTCTGCATCCGATATAGCCT
CGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTCTTCTTCCTCCTCCT
TCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCCGGATGGATAGGACA
TTGACCATTCTGGCCATGCTCAACCATCCCCAGCACACCGACCCCCTCGG
CCTCCCCTCCTTGACCCCTGTAACTGCAACGGCAGCAACAGGATCAACAG
CAGAGTACTACCCTCCTCCTCCTTCCCACCCTTGCTCGGTCTTGCGGAGG
ATTGGGCTCTTTTTCTCGGGCCACGGCCGTCTGGATCTCGTCCGTCGTCT
CCTCGATGGATGCCGCCGACGCCTTTCCCCCTCTGCTCCTTCTTCCCTTT
CTCCCTCGCTGCCTGATGAGATAGGGAGTGATGCTCTCTTCCTTGCCGTC
CTTCTTCATGATCCATCTCTGGTGATTGACGTGGCTCTGGCCTCGGGACG
GCGAGAGGCTGCGGCGGCTGTGTTAAGTGGGGGCAATGCAGGAAAGGAGG
GAGGGTCGGAGGATGAAGAAAAATTAATGCAGGCCTGGAAGGAGCTGTAT
GGGGAGAGAGTAGGCACATTATGATGGGACGCAAATGATTGAAAGACGCT
TGTGGATGAAAATTTAAAAAATGCAATGGATGAAGGCCCATGCAGTGCGT
AGGGGGATCTATTGCTTTGTGGGTGTGTTGATCAAGGCC

protein sequence of jgi.p|Nanoce1779_2|585438

>mRNA_3814-protein ID=mRNA_3814-protein|Name=jgi.p|Nanoce1779_2|585438|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MGMLLAAGHITRAVKWAQGVDPSLHDDVALQLFEPRGPAAVDVAVRSLPG
LSLALAIDLCIRYSLVSRLEAMLFSASSSSSFSSSSSAEEATARMDRTLT
ILAMLNHPQHTDPLGLPSLTPVTATAATGSTAEYYPPPPSHPCSVLRRIG
LFFSGHGRLDLVRRLLDGCRRRLSPSAPSSLSPSLPDEIGSDALFLAVLL
HDPSLVIDVALASGRREAAAAVLSGGNAGKEGGSEDEEKLMQAWKELYGE
RVGTL*

mRNA from alignment at scaffold_8:76509..78040-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3814 ID=mRNA_3814|Name=jgi.p|Nanoce1779_2|585438|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at scaffold_8:76509..78040- (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCCTTCACCTCCTCCCCCTCGACCACCCCACC
CTCCGCATGGGCATGCTCCTCGCTGCCGGCCACATCACACGAGCTGTCAA
GTGGGCGCAGGTAGGGAGGGAGAGAGGGAGGGAGGAAGGGAGGGAGGTAA
TGCTGGTATTGCTTTTGGCGCACTTTCAGGCATTGAAAAGAATAACCTGC
CGTTCCTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCAGGGC
GTGGACCCTTCCCTCCACGATGACGTGGCCTTGCAACTCTTCGAGCCCCG
TGGACCTGCTGCAGTGGATGTGGCTGTCAGATCCCTTCCAGGTAGGGAAG
AAGGGAGGGAGGGAGGTGGGGAAGGAAGGTAGGAAAGGAGGGAGGGAGGG
AGGGAGGGGAGGAAGGAAGGAGGGAAGGAAGATTTTGCTGAGGCTCCTCT
TCTTGTCCTTGTTCTCGTTGATAGGCCTGTCGTTGGCATTGGCCATCGAT
CTCTGCATCCGATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTC
CGCTTCTTCTTCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCA
CGGCCCGGATGGATAGGACATTGACCATTCTGGCCATGGTAAATTCCTTT
TTCCCTCCCTTTCTCTCCCTCCCTTTCTCCTTTTCTACTTTCCTTCATCC
TTTCCTCCCTTCTTTTTTGTCGCTCGTCGTGATATCTCTGACCTTCCTTC
CCTCCCTCCTTCCTTGCCTCCTTCCTCTCTTTCCTCCCTCCTTCAGCTCA
ACCATCCCCAGCACACCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTA
ACTGCAACGGCAGCAACAGGATCAACAGCAGAGTACTACCCTCCTCCTCC
TTCCCACCCTTGCTCGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCC
ACGGCCGGTAAGGAAGGCGTGGTGGGGGGGGGGGGGAGGGAGGGAAGGAG
AGGGAGGGAGGGAGGGGGAAAGAGTAGTAATATGATGAGTGATAGTTCTC
TGTTCAACGCATGAAGTCTGCTCGACATGTATATTAACCCCCCAATTTTC
CATCCTCCCTTATCCCCCTCAGTCTGGATCTCGTCCGTCGTCTCCTCGAT
GGATGCCGCCGACGCCTTTCCCCCTCTGCTCCTTCTTCCCTTTCTCCCTC
GCTGCCTGATGAGATAGGGAGTGATGCTCTCTTCCTTGCCGTCCTTCTTC
ATGATCCATCTCTGGTGATTGACGTGGCTCTGGCCTCGGGACGGCGAGAG
GCTGCGGCGGCTGTGTTAAGTGGGGGCAATGCAGGAAAGGAGGGAGGGTC
GGAGGATGAAGAAAAATTAATGCAGGCCTGGAAGGAGCTGTATGGGGAGA
GAGTAGGCACATTATGATGGGACGCAAATGATTGAAAGACGCTTGTGGAT
GAAAATTTAAAAAATGCAATGGATGAAGGCCCATGCAGTGCGTAGGGGGA
TCTATTGCTTTGTGGGTGTGTTGATCAAGGCC

Coding sequence (CDS) from alignment at scaffold_8:76509..78040-

>mRNA_3814 ID=mRNA_3814|Name=jgi.p|Nanoce1779_2|585438|organism=Nannochloropsis oceanica|type=CDS|length=3840bp|location=Sequence derived from alignment at scaffold_8:76509..78040- (Nannochloropsis oceanica)
TCTGGATCTCGTCCGTCGTCTCCTCGATGGATGCCGCCGACGCCTTTCCC
CCTCTGCTCCTTCTTCCCTTTCTCCCTCGCTGCCTGATGAGATAGGGAGT
GATGCTCTCTTCCTTGCCGTCCTTCTTCATGATCCATCTCTGGTGATTGA
CGTGGCTCTGGCCTCGGGACGGCGAGAGGCTGCGGCGGCTGTGTTAAGTG
GGGGCAATGCAGGAAAGGAGGGAGGGTCGGAGGATGAAGAAAAATTAATG
CAGGCCTGGAAGGAGCTGTATGGGGAGAGAGTAGGCACATTATGACTCAA
CCATCCCCAGCACACCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTAA
CTGCAACGGCAGCAACAGGATCAACAGCAGAGTACTACCCTCCTCCTCCT
TCCCACCCTTGCTCGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCCA
CGGCCGGCCTGTCGTTGGCATTGGCCATCGATCTCTGCATCCGATATAGC
CTCGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTCTTCTTCCTCCTC
CTTCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCCGGATGGATAGGA
CATTGACCATTCTGGCCATGGGCGTGGACCCTTCCCTCCACGATGACGTG
GCCTTGCAACTCTTCGAGCCCCGTGGACCTGCTGCAGTGGATGTGGCTGT
CAGATCCCTTCCAGATGGGCATGCTCCTCGCTGCCGGCCACATCACACGA
GCTGTCAAGTGGGCGCAGTCTGGATCTCGTCCGTCGTCTCCTCGATGGAT
GCCGCCGACGCCTTTCCCCCTCTGCTCCTTCTTCCCTTTCTCCCTCGCTG
CCTGATGAGATAGGGAGTGATGCTCTCTTCCTTGCCGTCCTTCTTCATGA
TCCATCTCTGGTGATTGACGTGGCTCTGGCCTCGGGACGGCGAGAGGCTG
CGGCGGCTGTGTTAAGTGGGGGCAATGCAGGAAAGGAGGGAGGGTCGGAG
GATGAAGAAAAATTAATGCAGGCCTGGAAGGAGCTGTATGGGGAGAGAGT
AGGCACATTATGACTCAACCATCCCCAGCACACCGACCCCCTCGGCCTCC
CCTCCTTGACCCCTGTAACTGCAACGGCAGCAACAGGATCAACAGCAGAG
TACTACCCTCCTCCTCCTTCCCACCCTTGCTCGGTCTTGCGGAGGATTGG
GCTCTTTTTCTCGGGCCACGGCCGGCCTGTCGTTGGCATTGGCCATCGAT
CTCTGCATCCGATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTC
CGCTTCTTCTTCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCA
CGGCCCGGATGGATAGGACATTGACCATTCTGGCCATGGGCGTGGACCCT
TCCCTCCACGATGACGTGGCCTTGCAACTCTTCGAGCCCCGTGGACCTGC
TGCAGTGGATGTGGCTGTCAGATCCCTTCCAGATGGGCATGCTCCTCGCT
GCCGGCCACATCACACGAGCTGTCAAGTGGGCGCAGTCTGGATCTCGTCC
GTCGTCTCCTCGATGGATGCCGCCGACGCCTTTCCCCCTCTGCTCCTTCT
TCCCTTTCTCCCTCGCTGCCTGATGAGATAGGGAGTGATGCTCTCTTCCT
TGCCGTCCTTCTTCATGATCCATCTCTGGTGATTGACGTGGCTCTGGCCT
CGGGACGGCGAGAGGCTGCGGCGGCTGTGTTAAGTGGGGGCAATGCAGGA
AAGGAGGGAGGGTCGGAGGATGAAGAAAAATTAATGCAGGCCTGGAAGGA
GCTGTATGGGGAGAGAGTAGGCACATTATGACTCAACCATCCCCAGCACA
CCGACCCCCTCGGCCTCCCCTCCTTGACCCCTGTAACTGCAACGGCAGCA
ACAGGATCAACAGCAGAGTACTACCCTCCTCCTCCTTCCCACCCTTGCTC
GGTCTTGCGGAGGATTGGGCTCTTTTTCTCGGGCCACGGCCGGCCTGTCG
TTGGCATTGGCCATCGATCTCTGCATCCGATATAGCCTCGTCTCCCGCCT
TGAAGCCATGCTCTTCTCCGCTTCTTCTTCCTCCTCCTTCTCCTCCTCCT
CATCGGCCGAAGAGGCCACGGCCCGGATGGATAGGACATTGACCATTCTG
GCCATGGGCGTGGACCCTTCCCTCCACGATGACGTGGCCTTGCAACTCTT
CGAGCCCCGTGGACCTGCTGCAGTGGATGTGGCTGTCAGATCCCTTCCAG
ATGGGCATGCTCCTCGCTGCCGGCCACATCACACGAGCTGTCAAGTGGGC
GCAGTCTGGATCTCGTCCGTCGTCTCCTCGATGGATGCCGCCGACGCCTT
TCCCCCTCTGCTCCTTCTTCCCTTTCTCCCTCGCTGCCTGATGAGATAGG
GAGTGATGCTCTCTTCCTTGCCGTCCTTCTTCATGATCCATCTCTGGTGA
TTGACGTGGCTCTGGCCTCGGGACGGCGAGAGGCTGCGGCGGCTGTGTTA
AGTGGGGGCAATGCAGGAAAGGAGGGAGGGTCGGAGGATGAAGAAAAATT
AATGCAGGCCTGGAAGGAGCTGTATGGGGAGAGAGTAGGCACATTATGAC
TCAACCATCCCCAGCACACCGACCCCCTCGGCCTCCCCTCCTTGACCCCT
GTAACTGCAACGGCAGCAACAGGATCAACAGCAGAGTACTACCCTCCTCC
TCCTTCCCACCCTTGCTCGGTCTTGCGGAGGATTGGGCTCTTTTTCTCGG
GCCACGGCCGGCCTGTCGTTGGCATTGGCCATCGATCTCTGCATCCGATA
TAGCCTCGTCTCCCGCCTTGAAGCCATGCTCTTCTCCGCTTCTTCTTCCT
CCTCCTTCTCCTCCTCCTCATCGGCCGAAGAGGCCACGGCCCGGATGGAT
AGGACATTGACCATTCTGGCCATGGGCGTGGACCCTTCCCTCCACGATGA
CGTGGCCTTGCAACTCTTCGAGCCCCGTGGACCTGCTGCAGTGGATGTGG
CTGTCAGATCCCTTCCAGATGGGCATGCTCCTCGCTGCCGGCCACATCAC
ACGAGCTGTCAAGTGGGCGCAGTCTGGATCTCGTCCGTCGTCTCCTCGAT
GGATGCCGCCGACGCCTTTCCCCCTCTGCTCCTTCTTCCCTTTCTCCCTC
GCTGCCTGATGAGATAGGGAGTGATGCTCTCTTCCTTGCCGTCCTTCTTC
ATGATCCATCTCTGGTGATTGACGTGGCTCTGGCCTCGGGACGGCGAGAG
GCTGCGGCGGCTGTGTTAAGTGGGGGCAATGCAGGAAAGGAGGGAGGGTC
GGAGGATGAAGAAAAATTAATGCAGGCCTGGAAGGAGCTGTATGGGGAGA
GAGTAGGCACATTATGACTCAACCATCCCCAGCACACCGACCCCCTCGGC
CTCCCCTCCTTGACCCCTGTAACTGCAACGGCAGCAACAGGATCAACAGC
AGAGTACTACCCTCCTCCTCCTTCCCACCCTTGCTCGGTCTTGCGGAGGA
TTGGGCTCTTTTTCTCGGGCCACGGCCGGCCTGTCGTTGGCATTGGCCAT
CGATCTCTGCATCCGATATAGCCTCGTCTCCCGCCTTGAAGCCATGCTCT
TCTCCGCTTCTTCTTCCTCCTCCTTCTCCTCCTCCTCATCGGCCGAAGAG
GCCACGGCCCGGATGGATAGGACATTGACCATTCTGGCCATGGGCGTGGA
CCCTTCCCTCCACGATGACGTGGCCTTGCAACTCTTCGAGCCCCGTGGAC
CTGCTGCAGTGGATGTGGCTGTCAGATCCCTTCCAGATGGGCATGCTCCT
CGCTGCCGGCCACATCACACGAGCTGTCAAGTGGGCGCAG

Synonyms

Publications