jgi.p|Nanoce1779_2|585421, mRNA_3810 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585421
Unique NamemRNA_3810
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length754
Alignment locationscaffold_8:59882..60635 -

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Properties
Property NameValue
TranscriptId585507
TrackFilteredModels2
ProteinId585421
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:59882..60635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585421gene_3810Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585421mRNA_3810-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3810CDS_3810Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3810 ID=mRNA_3810|Name=jgi.p|Nanoce1779_2|585421|organism=Nannochloropsis oceanica|type=mRNA|length=754bp
GGGCCTTGACTGCCTCTATGCTTCACTACGTGGAACGAGGCCCAGGGGAA
GGAGGAGGAAAGGAGGGAGGAGGGGGGGGGCGGCACTTGGACATGGCGGC
GGAGCTCTTGACCACAACCCAGGTACATTACATGCGCCATGCTCCAGACT
GGCTGCACGAGTTGCTTCACTTGGGTTTGAAAGTGGTGTGTGCTTTTGTG
GCCGTGGCGGCGTTGCGGTGGGGGCATCGAGAACATGAGGAGGACGAGGA
GGCGGAAGGGGCTGAAGAAGAGGCAGAGCAGAGCAATGATGCAGCAGCTA
TTGACGCTATATCTTCCCCTCTTCCTTCTTCGCCTCTTTGCCCCATTTTT
CCCACTTCCACCTCTGCTACCACCTGTCTTTCCACTGAAGCTCCCCTCCC
TCCTCCTTCCCACCCCTCCCACTCCTCCCTCCGTCCTCCTCATCATCACC
TCCATAATACTCGCCGCCTATGCGAAAAATTTACGACGGCCTTCTTGCTC
ACCTTCGGCTTTGCTCTAGGCGTGGGCATCCTTGCCATGGACATTGCACA
GCGTGACACGGAGCAAGATTTTCTCTCCTCCCCGCTCACGGTAGATGTAC
TCGAAGGGAAGGAGGTAGGCAGGGAGGGAGAATCCTCTTCAGCTTCATCC
TTCTTGTCTTTTTTCAAGGTGCAGGAAGGAAGAAATATAGAGTCGTTGTC
CTTCTCATCATTCTACAGGGTGGAGGAAGGGAGGGAAGGGGGGAGAGAAG
AAGG
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protein sequence of jgi.p|Nanoce1779_2|585421

>mRNA_3810-protein ID=mRNA_3810-protein|Name=jgi.p|Nanoce1779_2|585421|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MRRTRRRKGLKKRQSRAMMQQLLTLYLPLFLLRLFAPFFPLPPLLPPVFP
LKLPSLLLPTPPTPPSVLLIITSIILAAYAKNLRRPSCSPSALL*
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mRNA from alignment at scaffold_8:59882..60635-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3810 ID=mRNA_3810|Name=jgi.p|Nanoce1779_2|585421|organism=Nannochloropsis oceanica|type=mRNA|length=754bp|location=Sequence derived from alignment at scaffold_8:59882..60635- (Nannochloropsis oceanica)
GGGCCTTGACTGCCTCTATGCTTCACTACGTGGAACGAGGCCCAGGGGAA
GGAGGAGGAAAGGAGGGAGGAGGGGGGGGGCGGCACTTGGACATGGCGGC
GGAGCTCTTGACCACAACCCAGGTACATTACATGCGCCATGCTCCAGACT
GGCTGCACGAGTTGCTTCACTTGGGTTTGAAAGTGGTGTGTGCTTTTGTG
GCCGTGGCGGCGTTGCGGTGGGGGCATCGAGAACATGAGGAGGACGAGGA
GGCGGAAGGGGCTGAAGAAGAGGCAGAGCAGAGCAATGATGCAGCAGCTA
TTGACGCTATATCTTCCCCTCTTCCTTCTTCGCCTCTTTGCCCCATTTTT
CCCACTTCCACCTCTGCTACCACCTGTCTTTCCACTGAAGCTCCCCTCCC
TCCTCCTTCCCACCCCTCCCACTCCTCCCTCCGTCCTCCTCATCATCACC
TCCATAATACTCGCCGCCTATGCGAAAAATTTACGACGGCCTTCTTGCTC
ACCTTCGGCTTTGCTCTAGGCGTGGGCATCCTTGCCATGGACATTGCACA
GCGTGACACGGAGCAAGATTTTCTCTCCTCCCCGCTCACGGTAGATGTAC
TCGAAGGGAAGGAGGTAGGCAGGGAGGGAGAATCCTCTTCAGCTTCATCC
TTCTTGTCTTTTTTCAAGGTGCAGGAAGGAAGAAATATAGAGTCGTTGTC
CTTCTCATCATTCTACAGGGTGGAGGAAGGGAGGGAAGGGGGGAGAGAAG
AAGG
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Coding sequence (CDS) from alignment at scaffold_8:59882..60635-

>mRNA_3810 ID=mRNA_3810|Name=jgi.p|Nanoce1779_2|585421|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_8:59882..60635- (Nannochloropsis oceanica)
ATGAGGAGGACGAGGAGGCGGAAGGGGCTGAAGAAGAGGCAGAGCAGAGC
AATGATGCAGCAGCTATTGACGCTATATCTTCCCCTCTTCCTTCTTCGCC
TCTTTGCCCCATTTTTCCCACTTCCACCTCTGCTACCACCTGTCTTTCCA
CTGAAGCTCCCCTCCCTCCTCCTTCCCACCCCTCCCACTCCTCCCTCCGT
CCTCCTCATCATCACCTCCATAATACTCGCCGCCTATGCGAAAAATTTAC
GACGGCCTTCTTGCTCACCTTCGGCTTTGCTCTAG
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Synonyms
Publications