|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 577237 |
| Track | FilteredModels2 |
| ProteinId | 577151 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:945925..948206 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_381 ID=mRNA_381|Name=jgi.p|Nanoce1779_2|577151|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp
CGATAGCTGCCGTGATAGCAGCCAGACTTCTGCCAGAGCTAGGATTGTTC
CTTCTGTCTGTGCTTCCTGCCATGACCTTGCTCTCCTTCCTTGAGACACA
ATTCCGCAAGTCTGTCATTCGCATGCAAATGCTCATCTCCTTTTTTGAAG
CCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAGAACCTGACCAATTAT
TTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGGATACTGCGGCATGTG
CATTCTCTCCGCATTCCTGCAAGCCTACTTGATAGCCGGGCTCTTCGAGG
AATCCGTTAAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTACGTG
GTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCGCCTT
TGGTACGGTGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGGACGG
GGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGGCTTG
ATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACACAGA
AAGATGGTATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACATACG
ACTTTGCTTCCTTCGTGCTCGCCTCTGGGAATCTAGCCATTGTCGGGTTC
GCCATCGGGGTCGTCATCGTCATCTCCAGTTATGTCTACGTCCGAAAACG
TGTGCTCTTCCTGCTCAAGGCCTTCCCAATAGAGTTAAATGCACACGAAA
TGATGATCAACGGCGAGATCGAAGCCCCAGGGATCGGCTGCTGCAAACCT
TCCTTGTGTCCAACCTGCTATTTGTAGCCAAGCGGATTTGAGAGTGTCGT
TGAAATAACATAGAGTTAGGAATGGCAGATGATGAATGACAGAACAAACG
GCAGTGAATGAAGAGGAAAGAACCGACCTCAAAGCGGATGGTATGCAATA
ATGAGGAAGGAGAAGGTCATAGGAAATGTGTAAATATGGAAATGAGGTCG
GAAAATACGACAGGGGAACAAGCAATAAAGATGCAAGAACGAGTGAATGA
TGGAGCGAGTATAAACAGGCCCACCAATTCTATCCAGCTTTTGTTACATG
AAGAAACAAAGCATGCGATTCTGATGATTTGTGTTGTGTGCGCGTATTTT
GTGACAGCGCTTCAGGGCATGGTCCCTATCGGTCTCACTTAAAAACTATC
AACTCAACACAACTCAATTTAGACCTCACCCAGAGTATGTCAGGGGAAAG
CCGTTCCACCGAGGTCAGCCACAATTTTGTGCCATACTGATTTCCTCCTC
TCTCCTCGAATTTATGGGGAGGTTGGTAAAGTTAAGAAATGCG back to topprotein sequence of jgi.p|Nanoce1779_2|577151 >mRNA_381-protein ID=mRNA_381-protein|Name=jgi.p|Nanoce1779_2|577151|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MTLLSFLETQFRKSVIRMQMLISFFEAVLWMVPIVILENLTNYFLIVRTK
LPKEGYCGMCILSAFLQAYLIAGLFEESVKYLAVRRIINKSYVVDPRALV
VYSCCAGSAFGTVEDLMYNLSYGLGTGIVRAFTSVPLHCATGLIIGTSLA
ERKFFEQDTERWYKTLILPVLIHGTYDFASFVLASGNLAIVGFAIGVVIV
ISSYVYVRKRVLFLLKAFPIELNAHEMMINGEIEAPGIGCCKPSLCPTCY
L* back to topmRNA from alignment at scaffold_3:945925..948206+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_381 ID=mRNA_381|Name=jgi.p|Nanoce1779_2|577151|organism=Nannochloropsis oceanica|type=mRNA|length=2282bp|location=Sequence derived from alignment at scaffold_3:945925..948206+ (Nannochloropsis oceanica)
CGATAGCTGCCGTGATAGCAGCCAGACTTCTGCCAGAGCTAGGATTGTTC
CTTCTGTCTGTGCTTCCTGCCATGACCTTGCTCTCCTTCCTTGAGACACA
ATTCCGCAAGTCTGTCATTCGCATGCAAGTAAGTACTTGCAATACACTCT
CTTATCCCCCTCCGCTCCCCCCTTTCTTCCACCACATTGTTGATGCAAAC
CTATTAAGCCCCCTCCTTTCCCTTCTTGCCTCCCTCCCTCACCAGATGCT
CATCTCCTTTTTTGAAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGG
AGAACCTGACCAATTATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAG
GGATACTGCGGCATGTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGAT
AGCCGGGCTCTTCGAGGTTAGTTAGTTTTTGGTTCTTTTCCTTACTTCCT
TTTGGTCGTCACCCGACACAACGCCACTTCCCTGCCCGTCCTTCTCCCGT
GTGTTTTACAGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATCAAC
AAATCGTACGTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGC
AGGGAGCGCCTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTTATG
GCCTAGGGACGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGC
GCGACGGGCTTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGA
GCAGGACACAGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAATTC
ACGGTACGTGGATATATAGTTCTTCATTCTTCTTCTCTAGCAGTCTCTGA
GGTGGAAGGCCCAGTCTCACCTTCTCTTTCGTTTTCCTTGCCCCCTTTTG
CCACTTTATAGGTACATACGACTTTGCTTCCTTCGTGCTCGCCTCTGGGA
ATCTAGGTACGTGGCATGCGGAGGAAAAGTATTCCCGGAATGTACCGGCC
CTGTCGGGGAGGGTCTATGTAGATCCACGCTGCCTTGTCGCGAGGGCATT
GTGAGAAAATTTCGACCGTTTCATTTTACAGCGGTTGACAGCGATGGTAT
CGCCAAGGGCCCGCATCCATTTACAGCCCTACCGACCATGTATACGCGCA
AAGAAGGTCACTCAAACAAATCCACATGCCCGTTGTTTTGTGAGCAAAAA
GCACATTCCCGCCCTAATCCTTCGTGGGTCGTCGCCCTTATCTACTGAAG
TGCGCACGCATGTTGAACACAACAACCAAAAACAACATGCAAGAAAACGA
TGCTGGTGCAGCTCGGCCTCCTGGTGATGCAACGCCCGTGTTCACTTAGA
GAGTGCGGACAGCAGAGGGGATGAGACAATGCAAGGATGTTTGAAATGAA
TAAGGTCTTACGCACTCATATCTTCCATATCTCCTGTCTCAACTTTCTTC
CACATGACAGCCATTGTCGGGTTCGCCATCGGGGTCGTCATCGTCATCTC
CAGTTATGTCTACGTCCGAAAACGTAAGTTCCTCAATTGTCTTTCATTTT
CTCATTCCTTCCCACTCTCTTCTTCTCCCCCTCCAATTCGTCCCTTTCCC
TCACAACACCACTATATGTCATTCAAACTTTCGAACAGGTGTGCTCTTCC
TGCTCAAGGCCTTCCCAATAGAGTTAAATGCACACGAAATGATGATCAAC
GGCGAGATCGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTGTCC
AACCTGCTATTTGTAGCCAAGCGGATTTGAGAGTGTCGTTGAAATAACAT
AGAGTTAGGAATGGCAGATGATGAATGACAGAACAAACGGCAGTGAATGA
AGAGGAAAGAACCGACCTCAAAGCGGATGGTATGCAATAATGAGGAAGGA
GAAGGTCATAGGAAATGTGTAAATATGGAAATGAGGTCGGAAAATACGAC
AGGGGAACAAGCAATAAAGATGCAAGAACGAGTGAATGATGGAGCGAGTA
TAAACAGGCCCACCAATTCTATCCAGCTTTTGTTACATGAAGAAACAAAG
CATGCGATTCTGATGATTTGTGTTGTGTGCGCGTATTTTGTGACAGCGCT
TCAGGGCATGGTCCCTATCGGTCTCACTTAAAAACTATCAACTCAACACA
ACTCAATTTAGACCTCACCCAGAGTATGTCAGGGGAAAGCCGTTCCACCG
AGGTCAGCCACAATTTTGTGCCATACTGATTTCCTCCTCTCTCCTCGAAT
TTATGGGGAGGTTGGTAAAGTTAAGAAATGCG back to topCoding sequence (CDS) from alignment at scaffold_3:945925..948206+ >mRNA_381 ID=mRNA_381|Name=jgi.p|Nanoce1779_2|577151|organism=Nannochloropsis oceanica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_3:945925..948206+ (Nannochloropsis oceanica)
ATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCAAGTCTGTCATTCG
CATGCAAATGCTCATCTCCTTTTTTGAAGCCGTCCTCTGGATGGTGCCCA
TCGTCATTTTGGAGAACCTGACCAATTATTTCCTAATTGTTCGGACCAAG
CTGCCCAAAGAGGGATACTGCGGCATGTGCATTCTCTCCGCATTCCTGCA
AGCCTACTTGATAGCCGGGCTCTTCGAGGAATCCGTTAAGTACCTTGCCG
TCCGCCGGATCATCAACAAATCGTACGTGGTGGATCCGCGGGCCTTGGTC
GTATACAGCTGTTGTGCAGGGAGCGCCTTTGGTACGGTGGAGGACCTGAT
GTACAATTTGAGTTATGGCCTAGGGACGGGGATTGTCAGGGCGTTTACAA
GCGTGCCGCTGCACTGCGCGACGGGCTTGATCATCGGGACAAGCCTGGCG
GAGCGCAAGTTTTTTGAGCAGGACACAGAAAGATGGTATAAGACGTTAAT
TTTGCCAGTGTTAATTCACGGTACATACGACTTTGCTTCCTTCGTGCTCG
CCTCTGGGAATCTAGCCATTGTCGGGTTCGCCATCGGGGTCGTCATCGTC
ATCTCCAGTTATGTCTACGTCCGAAAACGTGTGCTCTTCCTGCTCAAGGC
CTTCCCAATAGAGTTAAATGCACACGAAATGATGATCAACGGCGAGATCG
AAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTGTCCAACCTGCTAT
TTGTAGATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCAAGTCTGT
CATTCGCATGCAAATGCTCATCTCCTTTTTTGAAGCCGTCCTCTGGATGG
TGCCCATCGTCATTTTGGAGAACCTGACCAATTATTTCCTAATTGTTCGG
ACCAAGCTGCCCAAAGAGGGATACTGCGGCATGTGCATTCTCTCCGCATT
CCTGCAAGCCTACTTGATAGCCGGGCTCTTCGAGGAATCCGTTAAGTACC
TTGCCGTCCGCCGGATCATCAACAAATCGTACGTGGTGGATCCGCGGGCC
TTGGTCGTATACAGCTGTTGTGCAGGGAGCGCCTTTGGTACGGTGGAGGA
CCTGATGTACAATTTGAGTTATGGCCTAGGGACGGGGATTGTCAGGGCGT
TTACAAGCGTGCCGCTGCACTGCGCGACGGGCTTGATCATCGGGACAAGC
CTGGCGGAGCGCAAGTTTTTTGAGCAGGACACAGAAAGATGGTATAAGAC
GTTAATTTTGCCAGTGTTAATTCACGGTACATACGACTTTGCTTCCTTCG
TGCTCGCCTCTGGGAATCTAGCCATTGTCGGGTTCGCCATCGGGGTCGTC
ATCGTCATCTCCAGTTATGTCTACGTCCGAAAACGTGTGCTCTTCCTGCT
CAAGGCCTTCCCAATAGAGTTAAATGCACACGAAATGATGATCAACGGCG
AGATCGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTGTCCAACC
TGCTATTTGTAGATGACCTTGCTCTCCTTCCTTGAGACACAATTCCGCAA
GTCTGTCATTCGCATGCAAATGCTCATCTCCTTTTTTGAAGCCGTCCTCT
GGATGGTGCCCATCGTCATTTTGGAGAACCTGACCAATTATTTCCTAATT
GTTCGGACCAAGCTGCCCAAAGAGGGATACTGCGGCATGTGCATTCTCTC
CGCATTCCTGCAAGCCTACTTGATAGCCGGGCTCTTCGAGGAATCCGTTA
AGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTACGTGGTGGATCCG
CGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCGCCTTTGGTACGGT
GGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGGACGGGGATTGTCA
GGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGGCTTGATCATCGGG
ACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACACAGAAAGATGGTA
TAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACATACGACTTTGCTT
CCTTCGTGCTCGCCTCTGGGAATCTAGCCATTGTCGGGTTCGCCATCGGG
GTCGTCATCGTCATCTCCAGTTATGTCTACGTCCGAAAACGTGTGCTCTT
CCTGCTCAAGGCCTTCCCAATAGAGTTAAATGCACACGAAATGATGATCA
ACGGCGAGATCGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCCTTGTGT
CCAACCTGCTATTTGTAGATGACCTTGCTCTCCTTCCTTGAGACACAATT
CCGCAAGTCTGTCATTCGCATGCAAATGCTCATCTCCTTTTTTGAAGCCG
TCCTCTGGATGGTGCCCATCGTCATTTTGGAGAACCTGACCAATTATTTC
CTAATTGTTCGGACCAAGCTGCCCAAAGAGGGATACTGCGGCATGTGCAT
TCTCTCCGCATTCCTGCAAGCCTACTTGATAGCCGGGCTCTTCGAGGAAT
CCGTTAAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTACGTGGTG
GATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCGCCTTTGG
TACGGTGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGGACGGGGA
TTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGGCTTGATC
ATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACACAGAAAG
ATGGTATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACATACGACT
TTGCTTCCTTCGTGCTCGCCTCTGGGAATCTAGCCATTGTCGGGTTCGCC
ATCGGGGTCGTCATCGTCATCTCCAGTTATGTCTACGTCCGAAAACGTGT
GCTCTTCCTGCTCAAGGCCTTCCCAATAGAGTTAAATGCACACGAAATGA
TGATCAACGGCGAGATCGAAGCCCCAGGGATCGGCTGCTGCAAACCTTCC
TTGTGTCCAACCTGCTATTTGTAGATGACCTTGCTCTCCTTCCTTGAGAC
ACAATTCCGCAAGTCTGTCATTCGCATGCAAATGCTCATCTCCTTTTTTG
AAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAGAACCTGACCAAT
TATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGGATACTGCGGCAT
GTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGATAGCCGGGCTCTTCG
AGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATCAACAAATCGTAC
GTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGCAGGGAGCGC
CTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTTATGGCCTAGGGA
CGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGCGCGACGGGC
TTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCAGGACAC
AGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAATTCACGGTACAT
ACGACTTTGCTTCCTTCGTGCTCGCCTCTGGGAATCTAGCCATTGTCGGG
TTCGCCATCGGGGTCGTCATCGTCATCTCCAGTTATGTCTACGTCCGAAA
ACGTGTGCTCTTCCTGCTCAAGGCCTTCCCAATAGAGTTAAATGCACACG
AAATGATGATCAACGGCGAGATCGAAGCCCCAGGGATCGGCTGCTGCAAA
CCTTCCTTGTGTCCAACCTGCTATTTGTAGATGACCTTGCTCTCCTTCCT
TGAGACACAATTCCGCAAGTCTGTCATTCGCATGCAAATGCTCATCTCCT
TTTTTGAAGCCGTCCTCTGGATGGTGCCCATCGTCATTTTGGAGAACCTG
ACCAATTATTTCCTAATTGTTCGGACCAAGCTGCCCAAAGAGGGATACTG
CGGCATGTGCATTCTCTCCGCATTCCTGCAAGCCTACTTGATAGCCGGGC
TCTTCGAGGAATCCGTTAAGTACCTTGCCGTCCGCCGGATCATCAACAAA
TCGTACGTGGTGGATCCGCGGGCCTTGGTCGTATACAGCTGTTGTGCAGG
GAGCGCCTTTGGTACGGTGGAGGACCTGATGTACAATTTGAGTTATGGCC
TAGGGACGGGGATTGTCAGGGCGTTTACAAGCGTGCCGCTGCACTGCGCG
ACGGGCTTGATCATCGGGACAAGCCTGGCGGAGCGCAAGTTTTTTGAGCA
GGACACAGAAAGATGGTATAAGACGTTAATTTTGCCAGTGTTAATTCACG
GTACATACGACTTTGCTTCCTTCGTGCTCGCCTCTGGGAATCTAGCCATT
GTCGGGTTCGCCATCGGGGTCGTCATCGTCATCTCCAGTTATGTCTACGT
CCGAAAACGTGTGCTCTTCCTGCTCAAGGCCTTCCCAATAGAGTTAAATG
CACACGAAATGATGATCAACGGCGAGATCGAAGCCCCAGGGATCGGCTGC
TGCAAACCTTCCTTGTGTCCAACCTGCTATTTGTAG back to top
|