jgi.p|Nanoce1779_2|585418, mRNA_3808 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585418
Unique NamemRNA_3808
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1841
Alignment locationscaffold_8:56097..58086 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585504
TrackFilteredModels2
ProteinId585418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:56097..58086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585418gene_3808Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585418mRNA_3808-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3808CDS_3808Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3808 ID=mRNA_3808|Name=jgi.p|Nanoce1779_2|585418|organism=Nannochloropsis oceanica|type=mRNA|length=1841bp
CAGGTCGTTTTCGCCAAAGCTCGTCATGGACAGACGCCCTCGGAGGCTTG
GAGGGTTGGAGGGTAAAATGTGAAGGTGCAAGGGAGGAGGAGGTCGAAGT
ATAGAATTTGGCGAGGCAGCGAGGCAACGTCCATCTTCCTTCTATTCGGT
CCTCCGCTACCCCACTGAGTGACACAGCTTGAAGGAGGACCCGTGCCTTC
GTGACCAATATCGCAACTAGAAGGCTGCTGATGGCGGTTCTCCTTGCTCA
AGCCTCTCAGCTCCATTGACTTCCTGCTACGAGCTATTCCCCCCTTGAAA
CATAAACGCGTGCACCCGCTCCCTTCGACTTCGCATCTGTTCCCGTACGA
ACCATGTGTGAAGCCTTGGACGTCCGCGGAGCCTTCGTTGTGGTTTTCAT
TTTCTTGGCATGACCCTAACTATTCTTCGTGAGCAGTAGAGAAGGTGCTC
CGGAGGTAGTCTCCTCGTTCTCTCGGAAAAATGAAAGATGGAAAAGAAAG
TGGGAAAGAGGAGTAGGGGTGATGGGGAGAGAAGAGGGGAAAGAGGCTAT
CTCGCCTAGCAATAAGCGTGCGCTTGGAGGAGATTATGATGGAGAATGGG
CACGTGAATAATGGATGAGAATCACGTGGATAGATGGACGGGCGTGAGGG
GGCACGTGTGGAAACGAGGAGAAAATCGAAAGGAGGAGAATTCGAGAAGA
CAGAGGGAAGAAAGACAGGAATAGACAGAAAGGGAAGATTGTCGGCTAGG
AACCCTGAACCCTTTCAATGTGACTATAAGCAAGTCTTATATGAATGTTT
TACGTGCCAATCACCTCGTCCTTAGAATTGAACAGGGTCTTGGATCCGTC
AATACTCTGGATTTGGAGGAAAAGAGAGAGATCGCCTCGAATAGGCAAAC
GCAATTGCCCAACTCACACTTACATCACACATTCGCCACATAAGCCATAC
AGTGATAGCATGCAGCCACAACAAGCGGCATTGGCGGACGATGAGAAGCT
TCTCCAGATGCTGTATTGCAGCCTCAAGCGGGCCATCGCCCCTTTGCACG
AGACTGCAGGTCCAGATTCTCCGCGCACCCCAACACCCTCCCCTCAGATC
ATCCCCTTGTTAAGTTTAGTCGTTCTCGATGATAAGGGCCACGACGAAAC
CCTTCTCCTCACCCAGAATCACCCCCTAAGTCAAAAGAACCCACTAACAC
TGGATCCTGCCCTGCAAACAAGTAGCACCAACACCCGCGCCCTGGCGAGC
CACTTGAATCAGGAGTTGCATCTTGCTATGCAGGCAGACATTCCCTTAGG
TGCCCGCGCCTACGAAATTTCCCAAGCCGCCTTGTGCCTGCGAATCGCGC
TCATGGAATCTACGGGAGTGGGAGAGCGTGATACCGACACAAGCAGGGGG
CCAAATATGATGCAGCAGCACGAGAGGCTACAGCCACAGCTACAGGAACA
ACAGCAGCAATCGCATCAGCAGCCAGGTGTGGCGGCGTCCGAAGGCTCAC
TAGCATCTGACTCGCTCATGCAGAGGAAACGGCTGAAGACAAGGCAGAGT
GAGGCCACGGGAAATTGTGCAGGGCAAGGACAGGAGGAAGGGGATGAGAA
CGACGAAGATGAGTGGTACCACAGGAACAAGGGGGCCAAGCCACTGTCAC
CAGTTGATTTCAAAATGGTGGTTGGCGTATTATTTTCCCTTCATATCTTG
GTGACCCAAGGGCCCCTGAATCTTGTCTTATTTCTGGTGGCCTACTTAGT
CATGTCCGCAGTTGTTAAGATGTTGCTGGCGATTATGTCTTGATTCTCGC
CGGTCCAAATAGAAAAAAAATAAAATAAAATTGCTTGAAAC
back to top

protein sequence of jgi.p|Nanoce1779_2|585418

>mRNA_3808-protein ID=mRNA_3808-protein|Name=jgi.p|Nanoce1779_2|585418|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MFYVPITSSLELNRVLDPSILWIWRKRERSPRIGKRNCPTHTYITHSPHK
PYSDSMQPQQAALADDEKLLQMLYCSLKRAIAPLHETAGPDSPRTPTPSP
QIIPLLSLVVLDDKGHDETLLLTQNHPLSQKNPLTLDPALQTSSTNTRAL
ASHLNQELHLAMQADIPLGARAYEISQAALCLRIALMESTGVGERDTDTS
RGPNMMQQHERLQPQLQEQQQQSHQQPGVAASEGSLASDSLMQRKRLKTR
QSEATGNCAGQGQEEGDENDEDEWYHRNKGAKPLSPVDFKMVVGVLFSLH
ILVTQGPLNLVLFLVAYLVMSAVVKMLLAIMS*
back to top

mRNA from alignment at scaffold_8:56097..58086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3808 ID=mRNA_3808|Name=jgi.p|Nanoce1779_2|585418|organism=Nannochloropsis oceanica|type=mRNA|length=1990bp|location=Sequence derived from alignment at scaffold_8:56097..58086- (Nannochloropsis oceanica)
CAGGTCGTTTTCGCCAAAGCTCGTCATGGACAGACGCCCTCGGAGGCTTG
GAGGGTTGGAGGGTAAAATGTGAAGGTGCAAGGGAGGAGGAGGTCGAAGT
ATAGAATTTGGCGAGGCAGCGAGGCAACGTCCATCTTCCTTCTATTCGGT
CCTCCGCTACCCCACTGAGTGACACAGGTCACAAATTGCATGGGAGTGGA
GGGCATGCGGAGGGAGCGGGGGACAATTTTTCATTTATGTGTATGCGGTT
TCCTCCCATTTGACGTCCACAACCCTAGTCTCATTTCATTCTCCCTCACC
TCATAAAACCCCACACATTTGAACAGCTTGAAGGAGGACCCGTGCCTTCG
TGACCAATATCGCAACTAGAAGGCTGCTGATGGCGGTTCTCCTTGCTCAA
GCCTCTCAGCTCCATTGACTTCCTGCTACGAGCTATTCCCCCCTTGAAAC
ATAAACGCGTGCACCCGCTCCCTTCGACTTCGCATCTGTTCCCGTACGAA
CCATGTGTGAAGCCTTGGACGTCCGCGGAGCCTTCGTTGTGGTTTTCATT
TTCTTGGCATGACCCTAACTATTCTTCGTGAGCAGTAGAGAAGGTGCTCC
GGAGGTAGTCTCCTCGTTCTCTCGGAAAAATGAAAGATGGAAAAGAAAGT
GGGAAAGAGGAGTAGGGGTGATGGGGAGAGAAGAGGGGAAAGAGGCTATC
TCGCCTAGCAATAAGCGTGCGCTTGGAGGAGATTATGATGGAGAATGGGC
ACGTGAATAATGGATGAGAATCACGTGGATAGATGGACGGGCGTGAGGGG
GCACGTGTGGAAACGAGGAGAAAATCGAAAGGAGGAGAATTCGAGAAGAC
AGAGGGAAGAAAGACAGGAATAGACAGAAAGGGAAGATTGTCGGCTAGGA
ACCCTGAACCCTTTCAATGTGACTATAAGCAAGTCTTATATGAATGTTTT
ACGTGCCAATCACCTCGTCCTTAGAATTGAACAGGGTCTTGGATCCGTCA
ATACTCTGGATTTGGAGGAAAAGAGAGAGATCGCCTCGAATAGGCAAACG
CAATTGCCCAACTCACACTTACATCACACATTCGCCACATAAGCCATACA
GTGATAGCATGCAGCCACAACAAGCGGCATTGGCGGACGATGAGAAGCTT
CTCCAGATGCTGTATTGCAGCCTCAAGCGGGCCATCGCCCCTTTGCACGA
GACTGCAGGTCCAGATTCTCCGCGCACCCCAACACCCTCCCCTCAGATCA
TCCCCTTGTTAAGTTTAGTCGTTCTCGATGATAAGGGCCACGACGAAACC
CTTCTCCTCACCCAGAATCACCCCCTAAGTCAAAAGAACCCACTAACACT
GGATCCTGCCCTGCAAACAAGTAGCACCAACACCCGCGCCCTGGCGAGCC
ACTTGAATCAGGAGTTGCATCTTGCTATGCAGGCAGACATTCCCTTAGGT
GCCCGCGCCTACGAAATTTCCCAAGCCGCCTTGTGCCTGCGAATCGCGCT
CATGGAATCTACGGGAGTGGGAGAGCGTGATACCGACACAAGCAGGGGGC
CAAATATGATGCAGCAGCACGAGAGGCTACAGCCACAGCTACAGGAACAA
CAGCAGCAATCGCATCAGCAGCCAGGTGTGGCGGCGTCCGAAGGCTCACT
AGCATCTGACTCGCTCATGCAGAGGAAACGGCTGAAGACAAGGCAGAGTG
AGGCCACGGGAAATTGTGCAGGGCAAGGACAGGAGGAAGGGGATGAGAAC
GACGAAGATGAGTGGTACCACAGGAACAAGGGGGCCAAGCCACTGTCACC
AGTTGATTTCAAAATGGTGGTTGGCGTATTATTTTCCCTTCATATCTTGG
TGACCCAAGGGCCCCTGAATCTTGTCTTATTTCTGGTGGCCTACTTAGTC
ATGTCCGCAGTTGTTAAGATGTTGCTGGCGATTATGTCTTGATTCTCGCC
GGTCCAAATAGAAAAAAAATAAAATAAAATTGCTTGAAAC
back to top

Coding sequence (CDS) from alignment at scaffold_8:56097..58086-

>mRNA_3808 ID=mRNA_3808|Name=jgi.p|Nanoce1779_2|585418|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at scaffold_8:56097..58086- (Nannochloropsis oceanica)
ATGTTTTACGTGCCAATCACCTCGTCCTTAGAATTGAACAGGGTCTTGGA
TCCGTCAATACTCTGGATTTGGAGGAAAAGAGAGAGATCGCCTCGAATAG
GCAAACGCAATTGCCCAACTCACACTTACATCACACATTCGCCACATAAG
CCATACAGTGATAGCATGCAGCCACAACAAGCGGCATTGGCGGACGATGA
GAAGCTTCTCCAGATGCTGTATTGCAGCCTCAAGCGGGCCATCGCCCCTT
TGCACGAGACTGCAGGTCCAGATTCTCCGCGCACCCCAACACCCTCCCCT
CAGATCATCCCCTTGTTAAGTTTAGTCGTTCTCGATGATAAGGGCCACGA
CGAAACCCTTCTCCTCACCCAGAATCACCCCCTAAGTCAAAAGAACCCAC
TAACACTGGATCCTGCCCTGCAAACAAGTAGCACCAACACCCGCGCCCTG
GCGAGCCACTTGAATCAGGAGTTGCATCTTGCTATGCAGGCAGACATTCC
CTTAGGTGCCCGCGCCTACGAAATTTCCCAAGCCGCCTTGTGCCTGCGAA
TCGCGCTCATGGAATCTACGGGAGTGGGAGAGCGTGATACCGACACAAGC
AGGGGGCCAAATATGATGCAGCAGCACGAGAGGCTACAGCCACAGCTACA
GGAACAACAGCAGCAATCGCATCAGCAGCCAGGTGTGGCGGCGTCCGAAG
GCTCACTAGCATCTGACTCGCTCATGCAGAGGAAACGGCTGAAGACAAGG
CAGAGTGAGGCCACGGGAAATTGTGCAGGGCAAGGACAGGAGGAAGGGGA
TGAGAACGACGAAGATGAGTGGTACCACAGGAACAAGGGGGCCAAGCCAC
TGTCACCAGTTGATTTCAAAATGGTGGTTGGCGTATTATTTTCCCTTCAT
ATCTTGGTGACCCAAGGGCCCCTGAATCTTGTCTTATTTCTGGTGGCCTA
CTTAGTCATGTCCGCAGTTGTTAAGATGTTGCTGGCGATTATGTCTTGA
back to top
Synonyms
Publications