jgi.p|Nanoce1779_2|585415, mRNA_3807 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585415
Unique NamemRNA_3807
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_8:54737..55921 +

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Properties
Property NameValue
TranscriptId585501
TrackFilteredModels2
ProteinId585415
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:54737..55921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585415gene_3807Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585415mRNA_3807-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3807CDS_3807Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3807 ID=mRNA_3807|Name=jgi.p|Nanoce1779_2|585415|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
AGGATGTTACCCCGCGAAGCCACTTATCTCTGCATTCCTCCTGCTCTTCG
TCCTCCCACCTGTCCCCATCCTCGCACCAGTCGACCCTCAAGCGTCTTTT
TATCAAGCAGTATCTGGATGTCCATGGCGCCTGCAAGAAAGTAGAAGACG
GCGACGCGGAAGAAGAAGAGGAAGAAGCACGTTGGAAGAGACATTTTGCT
TTCACGTACTTGCAGGTGCAGTTGTGGGTGATGGAAAACAACGATGGAGA
AGAGGACGTAAGAAAACGAAAGAAACGTTTGTTGGCGAGTGAATCGGTGT
GTCTGGCGGACGGGGATGGGCTGCTACAACTGTTCGGGGATTATGGAATC
CATTTGCGCATAGAGGAAGACGAAAAGGAACGAGGTCTGGACCTGGAGGA
TTACGATGCCGTTGCGTCCCTGCAGACGACCATGACGTTTTTGGAGGTCG
CACAGGATGGAAAGGATGACGTGCGCATAGCCAAAGCGCTGTTGTCCACC
AATTACGACCTACTCTCGGGTGATGATGATCAGGTGGACGACGAATCTGG
AGCCCTTGTGCCAGTCTACAGCTTGGGCGAGGATCACATGCTGCCGTACG
ACGTTTTGCAGACGGGTACATGCACGCTTCAACATAGCATACAGCTTCTG
ATGAACAATTGTGGGAGGGAAGAGAGGGAAAAGGACGTGGACTCGACAGG
CGATGACCCTTCCTTTTCCTTGCACGTGCATGCCCGCATTTCCATCGTGC
GTTTTCAGGAAGACTTCCATTGTGAATGTGGGGAGTGTGAAAGGCCTGTG
CTAGAGTTTTACGATACGATTATGGTTTGGCAGCACCTGGCAGCGTGCTT
GGCTGGGGTTAGGGACTGGCAGTAGTAGAAATTCGCGGTTTGGAGGTGGA
CCTGCTGTGTTCGCAGTCGTAATGGCGTTGGCATTCAATCTGCTGCCAAT
TCTGTTGAGTATGCAGGTCGAGGCAATAATAAGGCAGAAATGGTAGTGGA
TCTTGGAAAAAGTAATGGGCGAAAATAGGAAGCCGGTAAATTGTGGTGTT
TGACGAAAGCAAGGTGCATATTCTTCCAGAAAAGAAATGCGAAGAGAGAG
GAAAAGTCTTCGGATATCACCAGAATGGATGAAACCCAATGTGCAGATCG
GAGCCGTAAAGGCTCACGGGGGAAAAAGAAGTAGC
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protein sequence of jgi.p|Nanoce1779_2|585415

>mRNA_3807-protein ID=mRNA_3807-protein|Name=jgi.p|Nanoce1779_2|585415|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MENNDGEEDVRKRKKRLLASESVCLADGDGLLQLFGDYGIHLRIEEDEKE
RGLDLEDYDAVASLQTTMTFLEVAQDGKDDVRIAKALLSTNYDLLSGDDD
QVDDESGALVPVYSLGEDHMLPYDVLQTGTCTLQHSIQLLMNNCGREERE
KDVDSTGDDPSFSLHVHARISIVRFQEDFHCECGECERPVLEFYDTIMVW
QHLAACLAGVRDWQ*
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mRNA from alignment at scaffold_8:54737..55921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3807 ID=mRNA_3807|Name=jgi.p|Nanoce1779_2|585415|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_8:54737..55921+ (Nannochloropsis oceanica)
AGGATGTTACCCCGCGAAGCCACTTATCTCTGCATTCCTCCTGCTCTTCG
TCCTCCCACCTGTCCCCATCCTCGCACCAGTCGACCCTCAAGCGTCTTTT
TATCAAGCAGTATCTGGATGTCCATGGCGCCTGCAAGAAAGTAGAAGACG
GCGACGCGGAAGAAGAAGAGGAAGAAGCACGTTGGAAGAGACATTTTGCT
TTCACGTACTTGCAGGTGCAGTTGTGGGTGATGGAAAACAACGATGGAGA
AGAGGACGTAAGAAAACGAAAGAAACGTTTGTTGGCGAGTGAATCGGTGT
GTCTGGCGGACGGGGATGGGCTGCTACAACTGTTCGGGGATTATGGAATC
CATTTGCGCATAGAGGAAGACGAAAAGGAACGAGGTCTGGACCTGGAGGA
TTACGATGCCGTTGCGTCCCTGCAGACGACCATGACGTTTTTGGAGGTCG
CACAGGATGGAAAGGATGACGTGCGCATAGCCAAAGCGCTGTTGTCCACC
AATTACGACCTACTCTCGGGTGATGATGATCAGGTGGACGACGAATCTGG
AGCCCTTGTGCCAGTCTACAGCTTGGGCGAGGATCACATGCTGCCGTACG
ACGTTTTGCAGACGGGTACATGCACGCTTCAACATAGCATACAGCTTCTG
ATGAACAATTGTGGGAGGGAAGAGAGGGAAAAGGACGTGGACTCGACAGG
CGATGACCCTTCCTTTTCCTTGCACGTGCATGCCCGCATTTCCATCGTGC
GTTTTCAGGAAGACTTCCATTGTGAATGTGGGGAGTGTGAAAGGCCTGTG
CTAGAGTTTTACGATACGATTATGGTTTGGCAGCACCTGGCAGCGTGCTT
GGCTGGGGTTAGGGACTGGCAGTAGTAGAAATTCGCGGTTTGGAGGTGGA
CCTGCTGTGTTCGCAGTCGTAATGGCGTTGGCATTCAATCTGCTGCCAAT
TCTGTTGAGTATGCAGGTCGAGGCAATAATAAGGCAGAAATGGTAGTGGA
TCTTGGAAAAAGTAATGGGCGAAAATAGGAAGCCGGTAAATTGTGGTGTT
TGACGAAAGCAAGGTGCATATTCTTCCAGAAAAGAAATGCGAAGAGAGAG
GAAAAGTCTTCGGATATCACCAGAATGGATGAAACCCAATGTGCAGATCG
GAGCCGTAAAGGCTCACGGGGGAAAAAGAAGTAGC
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Coding sequence (CDS) from alignment at scaffold_8:54737..55921+

>mRNA_3807 ID=mRNA_3807|Name=jgi.p|Nanoce1779_2|585415|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_8:54737..55921+ (Nannochloropsis oceanica)
ATGGAAAACAACGATGGAGAAGAGGACGTAAGAAAACGAAAGAAACGTTT
GTTGGCGAGTGAATCGGTGTGTCTGGCGGACGGGGATGGGCTGCTACAAC
TGTTCGGGGATTATGGAATCCATTTGCGCATAGAGGAAGACGAAAAGGAA
CGAGGTCTGGACCTGGAGGATTACGATGCCGTTGCGTCCCTGCAGACGAC
CATGACGTTTTTGGAGGTCGCACAGGATGGAAAGGATGACGTGCGCATAG
CCAAAGCGCTGTTGTCCACCAATTACGACCTACTCTCGGGTGATGATGAT
CAGGTGGACGACGAATCTGGAGCCCTTGTGCCAGTCTACAGCTTGGGCGA
GGATCACATGCTGCCGTACGACGTTTTGCAGACGGGTACATGCACGCTTC
AACATAGCATACAGCTTCTGATGAACAATTGTGGGAGGGAAGAGAGGGAA
AAGGACGTGGACTCGACAGGCGATGACCCTTCCTTTTCCTTGCACGTGCA
TGCCCGCATTTCCATCGTGCGTTTTCAGGAAGACTTCCATTGTGAATGTG
GGGAGTGTGAAAGGCCTGTGCTAGAGTTTTACGATACGATTATGGTTTGG
CAGCACCTGGCAGCGTGCTTGGCTGGGGTTAGGGACTGGCAGTAG
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Synonyms
Publications