jgi.p|Nanoce1779_2|585380, mRNA_3803 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585380
Unique NamemRNA_3803
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1304
Alignment locationscaffold_8:37647..39027 +

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Properties
Property NameValue
TranscriptId585466
TrackFilteredModels2
ProteinId585380
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:37647..39027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585380gene_3803Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585380mRNA_3803-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3803CDS_3803Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3803 ID=mRNA_3803|Name=jgi.p|Nanoce1779_2|585380|organism=Nannochloropsis oceanica|type=mRNA|length=1304bp
ACAGTGAGATAAGAGGGCAACGTCATGCTTGGAGGGGGCGACAGATTCCT
CTTCTTCCTTTCACCGAATCACCAGCATCTCTTCGCGCCACTTCACCATC
CCCTGCCTCCCTGACAGCACGGTAACCCCATACGCACCCAATCACCACGA
CGCAAGCCCCTCCCTCACAACGAAAGGTTACTGGCCCGCTTGAAGCTAAA
GGTGCCTACCTTTTCCCATGATTTTTTAGCTGTCGCCATGAAGCGTTGAT
TCCTTTGCGAAGAAGCTCAGCACGCTTGCCTCCCCTTGCCGGCTACCCCT
ACCACGGATGCATCCTCTCCATCCTACCGGCATCGCCTTCGAGCCTTGAA
ATAGATACTACTCACCTGCTTTAATCAGGGGCCATAGCTGTGCCTGGGCT
GCACGACAGGCTTCTTCATTGACCACCCCCGTATGGACGGGCCCGTGGTA
TCCTTTGTTTTTGACACTTGCGGCGGTGCCTCGTATACCTCTAGCCGATC
GAGTGTGTGCTGTATTATAGCGCTATGCTACCAGGCCCGTCGAACGAGGA
CGCTTTCCTTTTCCCTGCCCCCACCCCTTGACTCACCCATCCATTCTCGG
GGCAAAATGAAGGCATGGGTTAACCCTCCCTGCATGCCTTATGGGTCCCT
GCGCCTACTCGCGACCAAGACGGGGGACATGATGACAAGGCTGACTGGCA
CTGCTTCCACGTGGCAAAAAATCGACCAAAAAGACATTCACATAACCATC
CTCCCTCCCTCCCTCCATCCCTCCCGCTCTCCCTGTTCTCGGCCCAGACA
GGCATGTTCTTCACCAGGCCCCTTCATCGCTTCGTAGCCAAGACTGTGGC
CGTTACTCTGCTGACCGGCGTCTGCTTCCACGTCGCGATGGATAATGCCC
TTGCCACGCGGGCCCCTCGACCTAGTGAGAGGAGGGGTGAGGAAGGGGGG
GAGGAGAGGTGGGGTTTGATGCCTGAGGAGGAGGGGGCCGAGGAGGAGGG
GAGGAGGGGAGGGAAGAAGATAGAGGAGGAGAGGAGTGGGGTGACGAATC
AGAACGAGGCTTTTAAACGGTTCTTGTCGGAGTTGGAGACGAAGGATGCC
AAGACGAGGATTGAGGAGGCGGCCCAGGGGATGGAGTATTTTATGCAGCC
CAAGGCCTTGGAAGCGGACGTGCGGTTGAAGCGAGTGCAGCGGCCCACAG
ACCCTCTTGCCGCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCGTCGTTT
TCATAATTCTTGACAGGAAAAAAGAGGGAGGGAGCGAGGGAGCGAATTAG
GGCC
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protein sequence of jgi.p|Nanoce1779_2|585380

>mRNA_3803-protein ID=mRNA_3803-protein|Name=jgi.p|Nanoce1779_2|585380|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MFFTRPLHRFVAKTVAVTLLTGVCFHVAMDNALATRAPRPSERRGEEGGE
ERWGLMPEEEGAEEEGRRGGKKIEEERSGVTNQNEAFKRFLSELETKDAK
TRIEEAAQGMEYFMQPKALEADVRLKRVQRPTDPLAASPPPPPPPPSSFS
*
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mRNA from alignment at scaffold_8:37647..39027+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3803 ID=mRNA_3803|Name=jgi.p|Nanoce1779_2|585380|organism=Nannochloropsis oceanica|type=mRNA|length=1381bp|location=Sequence derived from alignment at scaffold_8:37647..39027+ (Nannochloropsis oceanica)
ACAGTGAGATAAGAGGGCAACGTCATGCTTGGAGGGGGCGACAGATTCCT
CTTCTTCCTTTCACCGAATCACCAGCATCTCTTCGCGCCACTTCACCATC
CCCTGCCTCCCTGACAGCACGGTAACCCCATACGCACCCAATCACCACGA
CGCAAGCCCCTCCCTCACAACGAAAGGTTACTGGCCCGCTTGAAGCTAAA
GGTGCCTACCTTTTCCCATGATTTTTTAGCTGTCGCCATGAAGCGTTGAT
TCCTTTGCGAAGAAGCTCAGCACGCTTGCCTCCCCTTGCCGGCTACCCCT
ACCACGGATGCATCCTCTCCATCCTACCGGCATCGCCTTCGAGCCTTGAA
ATAGATACTACTCACCTGCTTTAATCAGGGGCCATAGCTGTGCCTGGGCT
GCACGACAGGCTTCTTCATTGACCACCCCCGTATGGACGGGCCCGTGGTA
TCCTTTGTTTTTGACACTTGCGGCGGTGCCTCGTATACCTCTAGCCGATC
GAGTGTGTGCTGTATTATAGCGCTATGCTACCAGGCCCGTCGAACGAGGA
CGCTTTCCTTTTCCCTGCCCCCACCCCTTGACTCACCCATCCATTCTCGG
GGCAAAATGAAGGCATGGGTTAACCCTCCCTGCATGCCTTATGGGTCCCT
GCGCCTACTCGCGACCAAGACGGGGGACATGATGACAAGGCTGACTGGCA
CTGCTTCCACGTGGCAAAAAATCGACCAAAAAGACATTCACATAACCATC
CTCCCTCCCTCCCTCCATCCCTCCCGCTCTCCCTGTTCTCGGCCCAGACA
GGCATGTTCTTCACCAGGCCCCTTCATCGCTTCGTAGCCAAGACTGTGGC
CGTTACTCTGCTGACCGGCGTCTGCTTCCACGTCGCGATGGATAATGCCC
TTGCCACGCGGGCCCCTCGACCTAGTGAGAGGAGGGGTGAGGAAGGGGGG
GAGGAGAGGTGGGGTTTGATGCCTGAGGAGGAGGGGGCCGAGGAGGAGGG
GAGGAGGGGAGGGAAGAAGATAGAGGAGGAGAGGAGTGGGGTGACGAATC
AGAACGAGGCTTTTAAACGGTTCTTGTCGGAGTTGGAGACGAAGGATGCC
AAGACGAGGATTGAGGAGGCGGCCCAGGGGATGGAGTATTTTATGCAGCC
CAAGGTAGGAGAGGAAGGAAGGAGGGAGGGGGGAACCGAAATGCGGTGAT
CTGATTTCTCTCTCCTCCTACAATCACACAGGCCTTGGAAGCGGACGTGC
GGTTGAAGCGAGTGCAGCGGCCCACAGACCCTCTTGCCGCTTCTCCTCCT
CCTCCTCCTCCTCCTCCTTCGTCGTTTTCATAATTCTTGACAGGAAAAAA
GAGGGAGGGAGCGAGGGAGCGAATTAGGGCC
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Coding sequence (CDS) from alignment at scaffold_8:37647..39027+

>mRNA_3803 ID=mRNA_3803|Name=jgi.p|Nanoce1779_2|585380|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_8:37647..39027+ (Nannochloropsis oceanica)
ATGTTCTTCACCAGGCCCCTTCATCGCTTCGTAGCCAAGACTGTGGCCGT
TACTCTGCTGACCGGCGTCTGCTTCCACGTCGCGATGGATAATGCCCTTG
CCACGCGGGCCCCTCGACCTAGTGAGAGGAGGGGTGAGGAAGGGGGGGAG
GAGAGGTGGGGTTTGATGCCTGAGGAGGAGGGGGCCGAGGAGGAGGGGAG
GAGGGGAGGGAAGAAGATAGAGGAGGAGAGGAGTGGGGTGACGAATCAGA
ACGAGGCTTTTAAACGGTTCTTGTCGGAGTTGGAGACGAAGGATGCCAAG
ACGAGGATTGAGGAGGCGGCCCAGGGGATGGAGTATTTTATGCAGCCCAA
GGCCTTGGAAGCGGACGTGCGGTTGAAGCGAGTGCAGCGGCCCACAGACC
CTCTTGCCGCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCGTCGTTTTCA
TAAATGTTCTTCACCAGGCCCCTTCATCGCTTCGTAGCCAAGACTGTGGC
CGTTACTCTGCTGACCGGCGTCTGCTTCCACGTCGCGATGGATAATGCCC
TTGCCACGCGGGCCCCTCGACCTAGTGAGAGGAGGGGTGAGGAAGGGGGG
GAGGAGAGGTGGGGTTTGATGCCTGAGGAGGAGGGGGCCGAGGAGGAGGG
GAGGAGGGGAGGGAAGAAGATAGAGGAGGAGAGGAGTGGGGTGACGAATC
AGAACGAGGCTTTTAAACGGTTCTTGTCGGAGTTGGAGACGAAGGATGCC
AAGACGAGGATTGAGGAGGCGGCCCAGGGGATGGAGTATTTTATGCAGCC
CAAGGCCTTGGAAGCGGACGTGCGGTTGAAGCGAGTGCAGCGGCCCACAG
ACCCTCTTGCCGCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCGTCGTTT
TCATAA
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Synonyms
Publications