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Properties
| Property Name | Value |
|---|
| TranscriptId | 414200 |
| Track | FilteredModels2 |
| ProteinId | 414114 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:33113..35285 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3801 ID=mRNA_3801|Name=jgi.p|Nanoce1779_2|414114|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
GTCTCTTGGACGTCGTACTTCTCTCTTCTCCTTTTATGTGCCCGCGGCGA
CTTCCTTTTACGGCCTTTCTGTTTAATTGGTTGTTGACCCGCCCTCCATC
CTCTCCTTCCCCTTCCCTCCCTCCCTTCCCTCTCCTCCTTCCTGATGAAG
TGGTGAAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCGGAC
TCCCTCATCTATTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCTCGT
GCTCACCGAAACTAAAGGCCTGACCGAGAAGGAGGCAGTGGGCGTCTTCT
TCTACTGCGAGCTTGGAGCCATCCTCGGGTCTTTCGCCTCAGGCTGGGTG
TCGGACCAAGTAGGCGGCCTCCGAACGTCCACCTCCTCCGTCTTTTCTCT
CCTCGCCCTCCCGTTCCTCTATGCCACCCACAAGATGCCCCTTCCTGGCC
TCCCCCCCCTCGCCTTCGCCTACTTCGTGCTCGGCGTTTTCGTCAACGGG
CCCAAGACACTCTCCGGCATCGCCCTTCGACAGCTCGTCCCCCCCTCGAT
GGCCGGCACTGCCATGGGTGTCCAGGGCCTCGTCGGGCAAGTGGGGGCCT
CCTGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCAGCATTGGGGATGGGCT
GCCATTCGACACCTTTGGGCAGCCTCCCTCCTCGCCTCGGCCGGTCTCCT
CTCCGTCCCAGGGCTGCTGGTCAAGGCCCGCCGCGTTGCCGAGCGACACC
GCGGAAACGAAGGGCCATTGATGAAACTCTTCAACTATTACCTCCCTCCC
GAGGAAGAGCGCGAACAAGCAGCCAACGAAGCGGCGGAAGCAAGGGCGGA
AAGGGCAAGAGAGAGGGCGAAGGAGAGGGAGGACAAAAAGAAGAAGTAGG
GAGGGAGGAAGGGTGTACGTAGCACTGTAGATAGAAAAGTCGAGAAAGAA
ATGGATAGATTCAGCGAAATTAGCGCACCCAGACACAAGATAACGAGCCG
GGCGGGTTCGCGAGGATTGGAGGGAGGGATGGAGGGAGGGACAGAGAGAG
TGCCGTTGGGCGAGTCTAGGATGAAAAGTTGTACAGCTAGATTTGTTGTT
TGGTCTCGAGGGCCTTTCCTGGTGGTGCGTTCGGGATAAAATTTGCCTCA
CTCAAGAGAGAGCTAAGGATTAAAGAGGCGAAGTGGAGATGAGAGAGGAG
AAAGGGGAAGGGGGAAAGGAAAGGAAATATAACAAATGAAAACGACAGCC
GTAGGTGAAACACAGAGCAACAAGATTGACAAGCGATTACTTC back to topprotein sequence of jgi.p|Nanoce1779_2|414114 >mRNA_3801-protein ID=mRNA_3801-protein|Name=jgi.p|Nanoce1779_2|414114|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MCPRRLPFTAFLFNWLLTRPPSSPSPSLPPFPLLLPDEVVKRILRPEVAA
LFLADSLIYFVIKGLADWSVLVLTETKGLTEKEAVGVFFYCELGAILGSF
ASGWVSDQVGGLRTSTSSVFSLLALPFLYATHKMPLPGLPPLAFAYFVLG
VFVNGPKTLSGIALRQLVPPSMAGTAMGVQGLVGQVGASWAGAPVGFVAQ
HWGWAAIRHLWAASLLASAGLLSVPGLLVKARRVAERHRGNEGPLMKLFN
YYLPPEEEREQAANEAAEARAERARERAKEREDKKKK* back to topmRNA from alignment at scaffold_8:33113..35285- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3801 ID=mRNA_3801|Name=jgi.p|Nanoce1779_2|414114|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp|location=Sequence derived from alignment at scaffold_8:33113..35285- (Nannochloropsis oceanica)
GTCTCTTGGACGTCGTACTTCTCTCTTCTCCTTTTATGTGCCCGCGGCGA
CTTCCTTTTACGGCCTTTCTGTTTAATTGGTTGTTGACCCGCCCTCCATC
CTCTCCTTCCCCTTCCCTCCCTCCCTTCCCTCTCCTCCTTCCTGATGAAG
TGGTGAAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCGGAC
TCCCTCATCTATTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCTCGT
GCTCACCGAAACTAAAGGTACGGCTGCCCCTCCCACCCTCCCTGCCCGTC
CTTGTGTCCCTCAACCCCCCGCCCTGATCGCCTGTCTCCACAGGCCTGAC
CGAGAAGGAGGCAGTGGGCGTCTTCTTCTACTGCGAGCTTGGAGCCATCC
TCGGGTCTTTCGCCTCAGGTACATTCACCCTTCCCGTCCTCCCTCCCACC
GTCCCTCCCTCCCTCCCTCCGTCAATCTCACCTTCCCTCCCTCCGTCCCT
CCCTCCCTCCAGGCTGGGTGTCGGACCAAGTAGGCGGCCTCCGAACGTCC
ACCTCCTCCGTCTTTTCTCTCCTCGCCCTCCCGTTCCTCTATGCCACCCA
CAAGATGCCCCTTCCTGGTACGCCCGCCCGCCCTCCCTCCCTCCCTCCCT
CCCTCCATCCCTCCCTCCCTTCTTTCTTTCCTTGTCACCATTCGCACACA
AGCCCCGTTTGGTTGGTCTGACTCCTTCGTGTCTTTTCCTATCATTCCTC
TCTCCCTCCCTCCCTCCTTCCAGGCCTCCCCCCCCTCGCCTTCGCCTACT
TCGTGCTCGGCGTTTTCGTCAACGGGCCCAAGACACTCTCCGGCATCGCC
CTTCGACAGGTACGACCCCACGCTCCCTCCCTCCTTCCCACCCTCCCTCT
TGCCCCATTTCCATTCCACCGTGCGTGACCATCGATTTACCGTCTTTGAG
ACACAGCAACCACAACAGCATCCCACTTTCCTCTCCTATCCTCACTCCTA
CCCTTGCTTCCCTTCTTCCCTCCCTCCCTCCCCTCCCTCCCTCCCCCAGC
TCGTCCCCCCCTCGATGGCCGGCACTGCCATGGGTGTCCAGGGCCTCGTC
GGGCAAGTGGGGGCCTCCTGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCA
GCATGTACGTGGCTCCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCC
CTCCCCCCTAGTCTCTCGCTAGGTAAAGCCATCTGAAAGCAGAAGGTGGT
ACTCACTCATCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTGTCTGCCT
GCCTAGTGGGGATGGGCTGCCATTCGACACCTTTGGGCAGCCTCCCTCCT
CGCCTCGGCCGGTCTCCTCTCCGTCCCAGGGCTGCTGGTCAAGGTCCGTA
CCCGGCGCTTGTCTCTGTCTTATTGTCTTCCCTTCCTTCTTCCTCCTTCT
TTCCACGCACGGAACCGTCCTGCCTTGGCTCGTCGTCCCTCCCTCACCTC
ACGCCTGCTCCGCCTCAAAAGATGAAGCGCTGTTTCACACTACCCCCCTC
ACCAACAGTCACCTCCTTTCCTCTTTCCCTCTTCCCCCCCCTCCCCTCTT
TCCAGGCCCGCCGCGTTGCCGAGCGACACCGCGGAAACGAAGGGCCATTG
ATGAAACTCTTCAACTATTACCTCCCTCCCGAGGAAGAGCGCGAACAAGC
AGCCAACGAAGCGGCGGAAGCAAGGGCGGAAAGGGCAAGAGAGAGGGCGA
AGGAGAGGGAGGACAAAAAGAAGAAGTAGGGAGGGAGGAAGGGTGTACGT
AGCACTGTAGATAGAAAAGTCGAGAAAGAAATGGATAGATTCAGCGAAAT
TAGCGCACCCAGACACAAGATAACGAGCCGGGCGGGTTCGCGAGGATTGG
AGGGAGGGATGGAGGGAGGGACAGAGAGAGTGCCGTTGGGCGAGTCTAGG
ATGAAAAGTTGTACAGCTAGATTTGTTGTTTGGTCTCGAGGGCCTTTCCT
GGTGGTGCGTTCGGGATAAAATTTGCCTCACTCAAGAGAGAGCTAAGGAT
TAAAGAGGCGAAGTGGAGATGAGAGAGGAGAAAGGGGAAGGGGGAAAGGA
AAGGAAATATAACAAATGAAAACGACAGCCGTAGGTGAAACACAGAGCAA
CAAGATTGACAAGCGATTACTTC back to topCoding sequence (CDS) from alignment at scaffold_8:33113..35285- >mRNA_3801 ID=mRNA_3801|Name=jgi.p|Nanoce1779_2|414114|organism=Nannochloropsis oceanica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_8:33113..35285- (Nannochloropsis oceanica)
GCCCGCCGCGTTGCCGAGCGACACCGCGGAAACGAAGGGCCATTGATGAA
ACTCTTCAACTATTACCTCCCTCCCGAGGAAGAGCGCGAACAAGCAGCCA
ACGAAGCGGCGGAAGCAAGGGCGGAAAGGGCAAGAGAGAGGGCGAAGGAG
AGGGAGGACAAAAAGAAGAAGTAGTGGGGATGGGCTGCCATTCGACACCT
TTGGGCAGCCTCCCTCCTCGCCTCGGCCGGTCTCCTCTCCGTCCCAGGGC
TGCTGGTCAAGCTCGTCCCCCCCTCGATGGCCGGCACTGCCATGGGTGTC
CAGGGCCTCGTCGGGCAAGTGGGGGCCTCCTGGGCCGGTGCTCCTGTCGG
TTTTGTCGCGCAGCATGCCTCCCCCCCCTCGCCTTCGCCTACTTCGTGCT
CGGCGTTTTCGTCAACGGGCCCAAGACACTCTCCGGCATCGCCCTTCGAC
AGGCTGGGTGTCGGACCAAGTAGGCGGCCTCCGAACGTCCACCTCCTCCG
TCTTTTCTCTCCTCGCCCTCCCGTTCCTCTATGCCACCCACAAGATGCCC
CTTCCTGGCCTGACCGAGAAGGAGGCAGTGGGCGTCTTCTTCTACTGCGA
GCTTGGAGCCATCCTCGGGTCTTTCGCCTCAGATGTGCCCGCGGCGACTT
CCTTTTACGGCCTTTCTGTTTAATTGGTTGTTGACCCGCCCTCCATCCTC
TCCTTCCCCTTCCCTCCCTCCCTTCCCTCTCCTCCTTCCTGATGAAGTGG
TGAAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCGGACTCC
CTCATCTATTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCTCGTGCT
CACCGAAACTAAAGGCCCGCCGCGTTGCCGAGCGACACCGCGGAAACGAA
GGGCCATTGATGAAACTCTTCAACTATTACCTCCCTCCCGAGGAAGAGCG
CGAACAAGCAGCCAACGAAGCGGCGGAAGCAAGGGCGGAAAGGGCAAGAG
AGAGGGCGAAGGAGAGGGAGGACAAAAAGAAGAAGTAGTGGGGATGGGCT
GCCATTCGACACCTTTGGGCAGCCTCCCTCCTCGCCTCGGCCGGTCTCCT
CTCCGTCCCAGGGCTGCTGGTCAAGCTCGTCCCCCCCTCGATGGCCGGCA
CTGCCATGGGTGTCCAGGGCCTCGTCGGGCAAGTGGGGGCCTCCTGGGCC
GGTGCTCCTGTCGGTTTTGTCGCGCAGCATGCCTCCCCCCCCTCGCCTTC
GCCTACTTCGTGCTCGGCGTTTTCGTCAACGGGCCCAAGACACTCTCCGG
CATCGCCCTTCGACAGGCTGGGTGTCGGACCAAGTAGGCGGCCTCCGAAC
GTCCACCTCCTCCGTCTTTTCTCTCCTCGCCCTCCCGTTCCTCTATGCCA
CCCACAAGATGCCCCTTCCTGGCCTGACCGAGAAGGAGGCAGTGGGCGTC
TTCTTCTACTGCGAGCTTGGAGCCATCCTCGGGTCTTTCGCCTCAGATGT
GCCCGCGGCGACTTCCTTTTACGGCCTTTCTGTTTAATTGGTTGTTGACC
CGCCCTCCATCCTCTCCTTCCCCTTCCCTCCCTCCCTTCCCTCTCCTCCT
TCCTGATGAAGTGGTGAAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCT
TTCTCGCGGACTCCCTCATCTATTTCGTCATCAAGGGTCTCGCCGACTGG
TCCGTCCTCGTGCTCACCGAAACTAAAGGCCCGCCGCGTTGCCGAGCGAC
ACCGCGGAAACGAAGGGCCATTGATGAAACTCTTCAACTATTACCTCCCT
CCCGAGGAAGAGCGCGAACAAGCAGCCAACGAAGCGGCGGAAGCAAGGGC
GGAAAGGGCAAGAGAGAGGGCGAAGGAGAGGGAGGACAAAAAGAAGAAGT
AGTGGGGATGGGCTGCCATTCGACACCTTTGGGCAGCCTCCCTCCTCGCC
TCGGCCGGTCTCCTCTCCGTCCCAGGGCTGCTGGTCAAGCTCGTCCCCCC
CTCGATGGCCGGCACTGCCATGGGTGTCCAGGGCCTCGTCGGGCAAGTGG
GGGCCTCCTGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCAGCATGCCTCC
CCCCCCTCGCCTTCGCCTACTTCGTGCTCGGCGTTTTCGTCAACGGGCCC
AAGACACTCTCCGGCATCGCCCTTCGACAGGCTGGGTGTCGGACCAAGTA
GGCGGCCTCCGAACGTCCACCTCCTCCGTCTTTTCTCTCCTCGCCCTCCC
GTTCCTCTATGCCACCCACAAGATGCCCCTTCCTGGCCTGACCGAGAAGG
AGGCAGTGGGCGTCTTCTTCTACTGCGAGCTTGGAGCCATCCTCGGGTCT
TTCGCCTCAGATGTGCCCGCGGCGACTTCCTTTTACGGCCTTTCTGTTTA
ATTGGTTGTTGACCCGCCCTCCATCCTCTCCTTCCCCTTCCCTCCCTCCC
TTCCCTCTCCTCCTTCCTGATGAAGTGGTGAAGCGCATCCTTCGCCCCGA
GGTGGCTGCCCTCTTTCTCGCGGACTCCCTCATCTATTTCGTCATCAAGG
GTCTCGCCGACTGGTCCGTCCTCGTGCTCACCGAAACTAAAGGCCCGCCG
CGTTGCCGAGCGACACCGCGGAAACGAAGGGCCATTGATGAAACTCTTCA
ACTATTACCTCCCTCCCGAGGAAGAGCGCGAACAAGCAGCCAACGAAGCG
GCGGAAGCAAGGGCGGAAAGGGCAAGAGAGAGGGCGAAGGAGAGGGAGGA
CAAAAAGAAGAAGTAGTGGGGATGGGCTGCCATTCGACACCTTTGGGCAG
CCTCCCTCCTCGCCTCGGCCGGTCTCCTCTCCGTCCCAGGGCTGCTGGTC
AAGCTCGTCCCCCCCTCGATGGCCGGCACTGCCATGGGTGTCCAGGGCCT
CGTCGGGCAAGTGGGGGCCTCCTGGGCCGGTGCTCCTGTCGGTTTTGTCG
CGCAGCATGCCTCCCCCCCCTCGCCTTCGCCTACTTCGTGCTCGGCGTTT
TCGTCAACGGGCCCAAGACACTCTCCGGCATCGCCCTTCGACAGGCTGGG
TGTCGGACCAAGTAGGCGGCCTCCGAACGTCCACCTCCTCCGTCTTTTCT
CTCCTCGCCCTCCCGTTCCTCTATGCCACCCACAAGATGCCCCTTCCTGG
CCTGACCGAGAAGGAGGCAGTGGGCGTCTTCTTCTACTGCGAGCTTGGAG
CCATCCTCGGGTCTTTCGCCTCAGATGTGCCCGCGGCGACTTCCTTTTAC
GGCCTTTCTGTTTAATTGGTTGTTGACCCGCCCTCCATCCTCTCCTTCCC
CTTCCCTCCCTCCCTTCCCTCTCCTCCTTCCTGATGAAGTGGTGAAGCGC
ATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCGGACTCCCTCATCTA
TTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCTCGTGCTCACCGAAA
CTAAAGGCCCGCCGCGTTGCCGAGCGACACCGCGGAAACGAAGGGCCATT
GATGAAACTCTTCAACTATTACCTCCCTCCCGAGGAAGAGCGCGAACAAG
CAGCCAACGAAGCGGCGGAAGCAAGGGCGGAAAGGGCAAGAGAGAGGGCG
AAGGAGAGGGAGGACAAAAAGAAGAAGTAGTGGGGATGGGCTGCCATTCG
ACACCTTTGGGCAGCCTCCCTCCTCGCCTCGGCCGGTCTCCTCTCCGTCC
CAGGGCTGCTGGTCAAGCTCGTCCCCCCCTCGATGGCCGGCACTGCCATG
GGTGTCCAGGGCCTCGTCGGGCAAGTGGGGGCCTCCTGGGCCGGTGCTCC
TGTCGGTTTTGTCGCGCAGCATGCCTCCCCCCCCTCGCCTTCGCCTACTT
CGTGCTCGGCGTTTTCGTCAACGGGCCCAAGACACTCTCCGGCATCGCCC
TTCGACAGGCTGGGTGTCGGACCAAGTAGGCGGCCTCCGAACGTCCACCT
CCTCCGTCTTTTCTCTCCTCGCCCTCCCGTTCCTCTATGCCACCCACAAG
ATGCCCCTTCCTGGCCTGACCGAGAAGGAGGCAGTGGGCGTCTTCTTCTA
CTGCGAGCTTGGAGCCATCCTCGGGTCTTTCGCCTCAGATGTGCCCGCGG
CGACTTCCTTTTACGGCCTTTCTGTTTAATTGGTTGTTGACCCGCCCTCC
ATCCTCTCCTTCCCCTTCCCTCCCTCCCTTCCCTCTCCTCCTTCCTGATG
AAGTGGTGAAGCGCATCCTTCGCCCCGAGGTGGCTGCCCTCTTTCTCGCG
GACTCCCTCATCTATTTCGTCATCAAGGGTCTCGCCGACTGGTCCGTCCT
CGTGCTCACCGAAACTAAAGGCCCGCCGCGTTGCCGAGCGACACCGCGGA
AACGAAGGGCCATTGATGAAACTCTTCAACTATTACCTCCCTCCCGAGGA
AGAGCGCGAACAAGCAGCCAACGAAGCGGCGGAAGCAAGGGCGGAAAGGG
CAAGAGAGAGGGCGAAGGAGAGGGAGGACAAAAAGAAGAAGTAGTGGGGA
TGGGCTGCCATTCGACACCTTTGGGCAGCCTCCCTCCTCGCCTCGGCCGG
TCTCCTCTCCGTCCCAGGGCTGCTGGTCAAGCTCGTCCCCCCCTCGATGG
CCGGCACTGCCATGGGTGTCCAGGGCCTCGTCGGGCAAGTGGGGGCCTCC
TGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCAGCATGCCTCCCCCCCCTC
GCCTTCGCCTACTTCGTGCTCGGCGTTTTCGTCAACGGGCCCAAGACACT
CTCCGGCATCGCCCTTCGACAGGCTGGGTGTCGGACCAAGTAGGCGGCCT
CCGAACGTCCACCTCCTCCGTCTTTTCTCTCCTCGCCCTCCCGTTCCTCT
ATGCCACCCACAAGATGCCCCTTCCTGGCCTGACCGAGAAGGAGGCAGTG
GGCGTCTTCTTCTACTGCGAGCTTGGAGCCATCCTCGGGTCTTTCGCCTC
AGATGTGCCCGCGGCGACTTCCTTTTACGGCCTTTCTGTTTAATTGGTTG
TTGACCCGCCCTCCATCCTCTCCTTCCCCTTCCCTCCCTCCCTTCCCTCT
CCTCCTTCCTGATGAAGTGGTGAAGCGCATCCTTCGCCCCGAGGTGGCTG
CCCTCTTTCTCGCGGACTCCCTCATCTATTTCGTCATCAAGGGTCTCGCC
GACTGGTCCGTCCTCGTGCTCACCGAAACTAAAGGCCCGCCGCGTTGCCG
AGCGACACCGCGGAAACGAAGGGCCATTGATGAAACTCTTCAACTATTAC
CTCCCTCCCGAGGAAGAGCGCGAACAAGCAGCCAACGAAGCGGCGGAAGC
AAGGGCGGAAAGGGCAAGAGAGAGGGCGAAGGAGAGGGAGGACAAAAAGA
AGAAGTAGTGGGGATGGGCTGCCATTCGACACCTTTGGGCAGCCTCCCTC
CTCGCCTCGGCCGGTCTCCTCTCCGTCCCAGGGCTGCTGGTCAAGCTCGT
CCCCCCCTCGATGGCCGGCACTGCCATGGGTGTCCAGGGCCTCGTCGGGC
AAGTGGGGGCCTCCTGGGCCGGTGCTCCTGTCGGTTTTGTCGCGCAGCAT
GCCTCCCCCCCCTCGCCTTCGCCTACTTCGTGCTCGGCGTTTTCGTCAAC
GGGCCCAAGACACTCTCCGGCATCGCCCTTCGACAGGCTGGGTGTCGGAC
CAAGTAGGCGGCCTCCGAACGTCCACCTCCTCCGTCTTTTCTCTCCTCGC
CCTCCCGTTCCTCTATGCCACCCACAAGATGCCCCTTCCTGGCCTGACCG
AGAAGGAGGCAGTGGGCGTCTTCTTCTACTGCGAGCTTGGAGCCATCCTC
GGGTCTTTCGCCTCAGATGTGCCCGCGGCGACTTCCTTTTACGGCCTTTC
TGTTTAATTGGTTGTTGACCCGCCCTCCATCCTCTCCTTCCCCTTCCCTC
CCTCCCTTCCCTCTCCTCCTTCCTGATGAAGTGGTGAAGCGCATCCTTCG
CCCCGAGGTGGCTGCCCTCTTTCTCGCGGACTCCCTCATCTATTTCGTCA
TCAAGGGTCTCGCCGACTGGTCCGTCCTCGTGCTCACCGAAACTAAAG back to top
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