jgi.p|Nanoce1779_2|627849, mRNA_380 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627849
Unique Name	mRNA_380
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2271
Alignment location	scaffold_3:942876..945461 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627935
Track	FilteredModels2
ProteinId	627849

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:942876..945461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627849	gene_380	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627849	mRNA_380-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_380	CDS_380	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:942876..945461-
coding sequence from alignment at scaffold_3:942876..945461-

mRNA sequence

>mRNA_380 ID=mRNA_380|Name=jgi.p|Nanoce1779_2|627849|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp
GGGCACGTTTGTTGTGCTTCGATGTTGAGGCGAGGCAATGATGCGGGACG
AGGACAAGCTGATGTCACGTAATTGAAAACGTGCCAAAAACCCGCCACCC
TGGCAACCGTAGACCCAGTTGTCCTGGACAGTGGCGCATGTGACATGGTG
AGGAGTTGGGCAAGGAAAAGGAGGCAAATCGCCAGGTCCTGCGCTCATTA
ACTTACGGACAGTGATGTCAGTGCGCGAGTCCGTGGATACATTTTTGTCC
TCGGTTTTCTTTTTTCCTCTTGGCTAGTGCCCACCTTCTTGTTAAAGACA
CCACAATGCGCACTCGTGCTCAATCTTGTTTTCTCTCTCTTGTGAATGCA
CTGCACAGGGTTCTACCCGAACGGTGGTGCTACCATCATTACCACCACGT
TGGACAAGAGCCATGAGCGGGCTGCCTGATGATGCTATTGCTCGTGCCAA
GGCCATTGCAGCACGGCTGACGGCTAGCCTGGGGCCGGAAGGGGGCGGCG
GGGGCACCAAGCGGCGGTTTGGGGAGGGCGAGTCGGATGTGCCGCGGAAG
AGGGAGAAGGTGTACATCCCCAAGGATAATACCGAGTTTAACTTCTTCAG
CTTGTTGATTGGCCCGCGTGGGTCGACCCAGAAGCGCTTGCAAGAACACA
CGGGCGCGCGCATCAACATCCGGGGCACAGGCTCAGAGGGGGGCAAGACT
GAAGATGCGCCGGACGGGGAGCCACAAGAAGATATGCACGTGTTAATCGA
GGGCACAGACGAGCAAGTGGCGGCAGCCAAGAAGGAAGTGGAGAAGATTT
TGTTCGACCCTGCCGAGGCCATGCGGCTCAAGGCAGCCCAATTGCGGAAC
CTGGCCGAGATCAAGGGTGGTTATCAGCCTGGGGTTGGCGTGGCGGGTGG
GGCGGGAGCCGACAGCGATGGCCATTACGGACCAGGGCGGGCACGGCCTG
GGTTGGGGTTCGGTGCGGAACCGGAGACGGGGGAAATGAAAATTCCGTCG
TCGATGGTGGGGTTGGTAATTGGCCGTGGAGGAGAAAATATTCAGAAGCT
GACGGCAAAAACGGGGTGTTTTGTCCAGGTGTCGAAGGAGACGGAGCCAG
GTGAGCAAACGCGAGTGGTTAGTATCAAAGGCCCGACGAAAGAGGGGGTG
GCTGAGGCGTTGAAAATGATACAGGAACAAGTGGATGAAGCGCAGCAAGA
ACGTAGCCGACCTCGTACTGGCGCCGGAGGGGGTGGTGGTGGTGGTGGTC
ACTACGGTGGAGGAGGAGGGGCCCCTGGATCCGATTATGGCTTTGCGGCC
ACGTTGACCGTGCCAGTGCCGTCGGAGAAAGTGGGGTTGATAATCGGGAG
AGGTGGGAGTACCATCCGCGCGATTCAAGACAGGACGGGCGCGAACGTCA
TGATCCCGAGCGCGCAACAGGGTGATGATCCGCACATCCGTACGATTACG
ATCTCAGCGCCAGACATGGGGGCGGCGGAGTTTGCGCGCAGTGAGATCCA
TGGTCTATTGGCCTCGGGACCTGGTGGCACGGGGGGAGGGGGGCCGCAGA
TGCAGCAAGGGGGAACGGCACTTATCATGCATATTGACCAGGAGAAGGTG
GGGTTGATCATTGGAAGATCGGGGGCCGTGATCAAGGAGATCCAACACCG
GACGGGGACGAGGATTCAGGTCCCCACCACTGCTGAGCCGGGGAGCAACC
CTCCAGTTCGTGCTGTCACCATCATGGGTCCTGGTGATGGCCCTGAGCGA
GCACGGTACGAAATTGAGATGAAGCTCATGAACGAAGGCTGTCGAGACGC
GCAAGGCAATTACATCCCTTACCAACCAAGTCCCGCCTTCATGCAACAAC
AGCCGGCCGCGGCCCCTGCTCCTGCGCCCGCTCCCGCGACCAATGGTGCC
GCTGGTACATCTTCGGCCGGTGGCACGGCTTCTAACGCTGGTGGCGCTGC
TGCTAGTGGAGCCTCGTACGATCCTACACAATACTGGGATCAATATTGGG
CGTATGCGCAGCATTATGGCGAGGAGTATGCACGCAAGCAGTATGACACG
TGGGCACCGCCGGATGGGACACCTCCTCCCCCCGGGATCACCTTGCCGAG
CCCCGCGGAGGCTGCCGCTGCAATTGCGGCGTTATCCAAGACTGCATAGT
GAGAATGGAGGGTGGATAACGAGGGCGGGAGGGAGAAATAATGAAAGAAG
TTGTGGAACACATCAAGGTTTTGAAAACGTGGGTTGGTAGCGGAAGGAAT
TCTCCCAAAAGAAGCGGTGAT

protein sequence of jgi.p|Nanoce1779_2|627849

>mRNA_380-protein ID=mRNA_380-protein|Name=jgi.p|Nanoce1779_2|627849|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGEGESDVPRKREKV
YIPKDNTEFNFFSLLIGPRGSTQKRLQEHTGARINIRGTGSEGGKTEDAP
DGEPQEDMHVLIEGTDEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAEI
KGGYQPGVGVAGGAGADSDGHYGPGRARPGLGFGAEPETGEMKIPSSMVG
LVIGRGGENIQKLTAKTGCFVQVSKETEPGEQTRVVSIKGPTKEGVAEAL
KMIQEQVDEAQQERSRPRTGAGGGGGGGGHYGGGGGAPGSDYGFAATLTV
PVPSEKVGLIIGRGGSTIRAIQDRTGANVMIPSAQQGDDPHIRTITISAP
DMGAAEFARSEIHGLLASGPGGTGGGGPQMQQGGTALIMHIDQEKVGLII
GRSGAVIKEIQHRTGTRIQVPTTAEPGSNPPVRAVTIMGPGDGPERARYE
IEMKLMNEGCRDAQGNYIPYQPSPAFMQQQPAAAPAPAPAPATNGAAGTS
SAGGTASNAGGAAASGASYDPTQYWDQYWAYAQHYGEEYARKQYDTWAPP
DGTPPPPGITLPSPAEAAAAIAALSKTA*

mRNA from alignment at scaffold_3:942876..945461-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_380 ID=mRNA_380|Name=jgi.p|Nanoce1779_2|627849|organism=Nannochloropsis oceanica|type=mRNA|length=2586bp|location=Sequence derived from alignment at scaffold_3:942876..945461- (Nannochloropsis oceanica)
GGGCACGTTTGTTGTGCTTCGATGTTGAGGCGAGGCAATGATGCGGGACG
AGGACAAGCTGATGTCACGTAATTGAAAACGTGCCAAAAACCCGCCACCC
TGGCAACCGTAGACCCAGTTGTCCTGGACAGTGGCGCATGTGACATGGTG
AGGAGTTGGGCAAGGAAAAGGAGGCAAATCGCCAGGTCCTGCGCTCATTA
ACTTACGGACAGTGATGTCAGTGCGCGAGTCCGTGGATACATTTTTGTCC
TCGGTTTTCTTTTTTCCTCTTGGCTAGTGCCCACCTTCTTGTTAAAGACA
CCACAATGCGCACTCGTGCTCAATCTTGTTTTCTCTCTCTTGTGAATGCA
CTGCACAGGGTTCTACCCGAACGGTGGTGCTACCATCATTACCACCACGT
TGGACAAGAGCCATGAGCGGGCTGCCTGATGATGCTATTGCTCGTGCCAA
GGCCATTGCAGCACGGCTGACGGCTAGCCTGGGGCCGGAAGGGGGCGGCG
GGGGCACCAAGCGGCGGTTTGGGGAGGGCGAGTCGGATGTGCCGCGGAAG
AGGGAGAAGGTGTACATCCCCAAGGATAATACCGAGTTTAACTTCTTCAG
CTTGTTGATTGGCCCGCGTGGGTCGACCCAGAAGCGCTTGCAAGAACACA
CGGGCGCGCGCATCAACATCCGGGGCACAGGCTCAGAGGGGGGCAAGACT
GAAGATGCGCCGGACGGGGAGCCACAAGAAGATATGCACGTGTTAATCGA
GGGCACAGACGAGCAAGTGGCGGCAGCCAAGAAGGAAGTGGAGAAGATTT
TGTTCGACCCTGCCGAGGCCATGCGGCTCAAGGCAGCCCAATTGCGGAAC
CTGGCCGAGATCAAGGGTGGTTATCAGCCTGGGGTTGGCGTGGCGGGTGG
GGCGGGAGCCGACAGCGATGGCCATTACGGACCAGGGCGGGCACGGCCTG
GGTTGGGGTTCGGTGCGGAACCGGAGACGGGGGAAATGAAAATTCCGTCG
TCGATGGTGGGGTTGGTAATTGGCCGTGGAGGAGAAAATATTCAGAAGCT
GACGGCAAAAACGGGGTGTTTTGTCCAGGTGTCGAAGGAGACGGAGCCAG
GTGAGCAAACGCGAGTGGTTAGTATCAAAGGCCCGACGAAAGAGGGGGTG
GCTGAGGCGTTGAAAATGATACAGGAACAAGTGGATGAAGCGCAGCAAGA
ACGTAGCCGACCTCGTACTGGCGCCGGAGGGGGTGGTGGTGGTGGTGGTC
ACTACGGTGGAGGAGGAGGGGCCCCTGGATCCGATTATGGCTTTGCGGCC
ACGTTGACCGTGCCAGTGCCGTCGGAGAAAGTGGGGTTGATAATCGGGAG
AGGTGGGAGTACCATCCGCGCGATTCAAGACAGGACGGGCGCGAACGTCA
TGATCCCGAGCGCGCAACAGGGTGATGATCCGCACATCCGTACGATTACG
ATCTCAGCGCCAGACATGGGGGCGGCGGAGTTTGCGCGCAGTGAGATCCA
TGGTCTATTGGCCTCGGGACCTGGTGGCACGGGGGGAGGGGGGCCGCAGA
TGCAGCAAGGGGGAACGGCACTTATCATGCATATTGACCAGGAGAAGGTG
GGGTTGATCATTGGAAGATCGGGGGCCGTGATCAAGGAGATCCAACACCG
GACGGGGACGAGGATTCAGGTCCCCACCACTGCTGAGCCGGGGAGCAACC
CTCCAGTTCGTGCTGTCACCATCATGGGTCCTGGTGATGGCCCTGAGCGA
GCACGGTACGAAATTGAGATGAAGCTCATGAACGAAGGCTGTCGAGACGC
GCAAGGCAATTACATCCCTTACCAACCAAGTCCCGCCTTCATGGTGCCTG
TCGGTCCAAATGGTGTTCCAGGCGCTACTCCTCCCCCTCCTCCTCCTCAG
GCCTCCCCATACTTCCAAGCCCCCCCCGGCTATCCGCCCCAGCAGCCTCC
TCCCGGCTATCCGCCTACTGTTTATCCTCCCCAACCCCAACAACACCAGC
CAGACCCCTATGCTGCGTACTACCAGCAGCACCAGCAGCAGCAGCAGCAG
CACCAGCAGCACCAGCAGCACCAGCAGCCTCCTCCTCCTCAGCATCAGCA
ACACACCGCATACCCTCCCCAGCCCAATGGTGGTACTGGTGCCCTCCCCC
CTCCTCAGCAACAACAGCCGGCCGCGGCCCCTGCTCCTGCGCCCGCTCCC
GCGACCAATGGTGCCGCTGGTACATCTTCGGCCGGTGGCACGGCTTCTAA
CGCTGGTGGCGCTGCTGCTAGTGGAGCCTCGTACGATCCTACACAATACT
GGGATCAATATTGGGCGTATGCGCAGCATTATGGCGAGGAGTATGCACGC
AAGCAGTATGACACGTGGGCACCGCCGGATGGGACACCTCCTCCCCCCGG
GATCACCTTGCCGAGCCCCGCGGAGGCTGCCGCTGCAATTGCGGCGTTAT
CCAAGACTGCATAGTGAGAATGGAGGGTGGATAACGAGGGCGGGAGGGAG
AAATAATGAAAGAAGTTGTGGAACACATCAAGGTTTTGAAAACGTGGGTT
GGTAGCGGAAGGAATTCTCCCAAAAGAAGCGGTGAT

Coding sequence (CDS) from alignment at scaffold_3:942876..945461-

>mRNA_380 ID=mRNA_380|Name=jgi.p|Nanoce1779_2|627849|organism=Nannochloropsis oceanica|type=CDS|length=3474bp|location=Sequence derived from alignment at scaffold_3:942876..945461- (Nannochloropsis oceanica)
CAACAACAGCCGGCCGCGGCCCCTGCTCCTGCGCCCGCTCCCGCGACCAA
TGGTGCCGCTGGTACATCTTCGGCCGGTGGCACGGCTTCTAACGCTGGTG
GCGCTGCTGCTAGTGGAGCCTCGTACGATCCTACACAATACTGGGATCAA
TATTGGGCGTATGCGCAGCATTATGGCGAGGAGTATGCACGCAAGCAGTA
TGACACGTGGGCACCGCCGGATGGGACACCTCCTCCCCCCGGGATCACCT
TGCCGAGCCCCGCGGAGGCTGCCGCTGCAATTGCGGCGTTATCCAAGACT
GCATAGATGAGCGGGCTGCCTGATGATGCTATTGCTCGTGCCAAGGCCAT
TGCAGCACGGCTGACGGCTAGCCTGGGGCCGGAAGGGGGCGGCGGGGGCA
CCAAGCGGCGGTTTGGGGAGGGCGAGTCGGATGTGCCGCGGAAGAGGGAG
AAGGTGTACATCCCCAAGGATAATACCGAGTTTAACTTCTTCAGCTTGTT
GATTGGCCCGCGTGGGTCGACCCAGAAGCGCTTGCAAGAACACACGGGCG
CGCGCATCAACATCCGGGGCACAGGCTCAGAGGGGGGCAAGACTGAAGAT
GCGCCGGACGGGGAGCCACAAGAAGATATGCACGTGTTAATCGAGGGCAC
AGACGAGCAAGTGGCGGCAGCCAAGAAGGAAGTGGAGAAGATTTTGTTCG
ACCCTGCCGAGGCCATGCGGCTCAAGGCAGCCCAATTGCGGAACCTGGCC
GAGATCAAGGGTGGTTATCAGCCTGGGGTTGGCGTGGCGGGTGGGGCGGG
AGCCGACAGCGATGGCCATTACGGACCAGGGCGGGCACGGCCTGGGTTGG
GGTTCGGTGCGGAACCGGAGACGGGGGAAATGAAAATTCCGTCGTCGATG
GTGGGGTTGGTAATTGGCCGTGGAGGAGAAAATATTCAGAAGCTGACGGC
AAAAACGGGGTGTTTTGTCCAGGTGTCGAAGGAGACGGAGCCAGGTGAGC
AAACGCGAGTGGTTAGTATCAAAGGCCCGACGAAAGAGGGGGTGGCTGAG
GCGTTGAAAATGATACAGGAACAAGTGGATGAAGCGCAGCAAGAACGTAG
CCGACCTCGTACTGGCGCCGGAGGGGGTGGTGGTGGTGGTGGTCACTACG
GTGGAGGAGGAGGGGCCCCTGGATCCGATTATGGCTTTGCGGCCACGTTG
ACCGTGCCAGTGCCGTCGGAGAAAGTGGGGTTGATAATCGGGAGAGGTGG
GAGTACCATCCGCGCGATTCAAGACAGGACGGGCGCGAACGTCATGATCC
CGAGCGCGCAACAGGGTGATGATCCGCACATCCGTACGATTACGATCTCA
GCGCCAGACATGGGGGCGGCGGAGTTTGCGCGCAGTGAGATCCATGGTCT
ATTGGCCTCGGGACCTGGTGGCACGGGGGGAGGGGGGCCGCAGATGCAGC
AAGGGGGAACGGCACTTATCATGCATATTGACCAGGAGAAGGTGGGGTTG
ATCATTGGAAGATCGGGGGCCGTGATCAAGGAGATCCAACACCGGACGGG
GACGAGGATTCAGGTCCCCACCACTGCTGAGCCGGGGAGCAACCCTCCAG
TTCGTGCTGTCACCATCATGGGTCCTGGTGATGGCCCTGAGCGAGCACGG
TACGAAATTGAGATGAAGCTCATGAACGAAGGCTGTCGAGACGCGCAAGG
CAATTACATCCCTTACCAACCAAGTCCCGCCTTCATGCAACAACAGCCGG
CCGCGGCCCCTGCTCCTGCGCCCGCTCCCGCGACCAATGGTGCCGCTGGT
ACATCTTCGGCCGGTGGCACGGCTTCTAACGCTGGTGGCGCTGCTGCTAG
TGGAGCCTCGTACGATCCTACACAATACTGGGATCAATATTGGGCGTATG
CGCAGCATTATGGCGAGGAGTATGCACGCAAGCAGTATGACACGTGGGCA
CCGCCGGATGGGACACCTCCTCCCCCCGGGATCACCTTGCCGAGCCCCGC
GGAGGCTGCCGCTGCAATTGCGGCGTTATCCAAGACTGCATAGATGAGCG
GGCTGCCTGATGATGCTATTGCTCGTGCCAAGGCCATTGCAGCACGGCTG
ACGGCTAGCCTGGGGCCGGAAGGGGGCGGCGGGGGCACCAAGCGGCGGTT
TGGGGAGGGCGAGTCGGATGTGCCGCGGAAGAGGGAGAAGGTGTACATCC
CCAAGGATAATACCGAGTTTAACTTCTTCAGCTTGTTGATTGGCCCGCGT
GGGTCGACCCAGAAGCGCTTGCAAGAACACACGGGCGCGCGCATCAACAT
CCGGGGCACAGGCTCAGAGGGGGGCAAGACTGAAGATGCGCCGGACGGGG
AGCCACAAGAAGATATGCACGTGTTAATCGAGGGCACAGACGAGCAAGTG
GCGGCAGCCAAGAAGGAAGTGGAGAAGATTTTGTTCGACCCTGCCGAGGC
CATGCGGCTCAAGGCAGCCCAATTGCGGAACCTGGCCGAGATCAAGGGTG
GTTATCAGCCTGGGGTTGGCGTGGCGGGTGGGGCGGGAGCCGACAGCGAT
GGCCATTACGGACCAGGGCGGGCACGGCCTGGGTTGGGGTTCGGTGCGGA
ACCGGAGACGGGGGAAATGAAAATTCCGTCGTCGATGGTGGGGTTGGTAA
TTGGCCGTGGAGGAGAAAATATTCAGAAGCTGACGGCAAAAACGGGGTGT
TTTGTCCAGGTGTCGAAGGAGACGGAGCCAGGTGAGCAAACGCGAGTGGT
TAGTATCAAAGGCCCGACGAAAGAGGGGGTGGCTGAGGCGTTGAAAATGA
TACAGGAACAAGTGGATGAAGCGCAGCAAGAACGTAGCCGACCTCGTACT
GGCGCCGGAGGGGGTGGTGGTGGTGGTGGTCACTACGGTGGAGGAGGAGG
GGCCCCTGGATCCGATTATGGCTTTGCGGCCACGTTGACCGTGCCAGTGC
CGTCGGAGAAAGTGGGGTTGATAATCGGGAGAGGTGGGAGTACCATCCGC
GCGATTCAAGACAGGACGGGCGCGAACGTCATGATCCCGAGCGCGCAACA
GGGTGATGATCCGCACATCCGTACGATTACGATCTCAGCGCCAGACATGG
GGGCGGCGGAGTTTGCGCGCAGTGAGATCCATGGTCTATTGGCCTCGGGA
CCTGGTGGCACGGGGGGAGGGGGGCCGCAGATGCAGCAAGGGGGAACGGC
ACTTATCATGCATATTGACCAGGAGAAGGTGGGGTTGATCATTGGAAGAT
CGGGGGCCGTGATCAAGGAGATCCAACACCGGACGGGGACGAGGATTCAG
GTCCCCACCACTGCTGAGCCGGGGAGCAACCCTCCAGTTCGTGCTGTCAC
CATCATGGGTCCTGGTGATGGCCCTGAGCGAGCACGGTACGAAATTGAGA
TGAAGCTCATGAACGAAGGCTGTCGAGACGCGCAAGGCAATTACATCCCT
TACCAACCAAGTCCCGCCTTCATG

Synonyms

Publications