jgi.p|Nanoce1779_2|575990, mRNA_38 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575990
Unique NamemRNA_38
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length644
Alignment locationscaffold_3:110335..110978 -

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Properties
Property NameValue
TranscriptId576076
TrackFilteredModels2
ProteinId575990
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:110335..110978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575990gene_38Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575990mRNA_38-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_38CDS_38Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_38 ID=mRNA_38|Name=jgi.p|Nanoce1779_2|575990|organism=Nannochloropsis oceanica|type=mRNA|length=644bp
CAACAGAAACAAAACGAACATGAAACTCCTACTTCCGGTCCTCGTCATCT
TCGCCTTGGCCAGCACTTCCACGGCCTTTCTCCTCCCGTCCTGCCCCATC
CCTTCCACGTTCAGCTGGAGCAGCAGCAGCAGCAACACCCGCCTCGGTGC
ATCCATCTACGACGACATCAATGCCGCCATGAAGCAAGCTATGAAGGATA
AGGCTAAGGAAAAGCTCAGTGCTTTGCGCAACATCAAATCTGCCTTTGGA
ACGGCCCTCAAAGAGGAAGGCGCTGCTGAATCGCTGCCGGACGAGAAGGC
CATTGCAATTCTTACCAAGCTTCGCAAACAAAGGCTAGAGAGCATCGAGA
TGTTCCAGAAAGGCAATCGTGATGACATGGTACAGGCCGAACAAGCCGAG
CTGGCCATCTTGGAGGCATACTTGCCTCAGCTGGCTGATGAGGCCACGAC
GAGGGAGTGGGTCGCTGCTGCCATCGACGAAAGCGGGGCCAAAGCCAAGA
GTGACATGGGGAAGGTGATGGGGGTGATGATGAAGAAGCACAAGGGGAAG
ACGGACAACAAATTGGTATCGAAGCTGGTGGGGGAGATGCTGGGGTAGGT
GATGTAGGGTAGAAAGGACTAAGAACAAGGGGTGACATTTGATG
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protein sequence of jgi.p|Nanoce1779_2|575990

>mRNA_38-protein ID=mRNA_38-protein|Name=jgi.p|Nanoce1779_2|575990|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MKLLLPVLVIFALASTSTAFLLPSCPIPSTFSWSSSSSNTRLGASIYDDI
NAAMKQAMKDKAKEKLSALRNIKSAFGTALKEEGAAESLPDEKAIAILTK
LRKQRLESIEMFQKGNRDDMVQAEQAELAILEAYLPQLADEATTREWVAA
AIDESGAKAKSDMGKVMGVMMKKHKGKTDNKLVSKLVGEMLG*
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mRNA from alignment at scaffold_3:110335..110978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_38 ID=mRNA_38|Name=jgi.p|Nanoce1779_2|575990|organism=Nannochloropsis oceanica|type=mRNA|length=644bp|location=Sequence derived from alignment at scaffold_3:110335..110978- (Nannochloropsis oceanica)
CAACAGAAACAAAACGAACATGAAACTCCTACTTCCGGTCCTCGTCATCT
TCGCCTTGGCCAGCACTTCCACGGCCTTTCTCCTCCCGTCCTGCCCCATC
CCTTCCACGTTCAGCTGGAGCAGCAGCAGCAGCAACACCCGCCTCGGTGC
ATCCATCTACGACGACATCAATGCCGCCATGAAGCAAGCTATGAAGGATA
AGGCTAAGGAAAAGCTCAGTGCTTTGCGCAACATCAAATCTGCCTTTGGA
ACGGCCCTCAAAGAGGAAGGCGCTGCTGAATCGCTGCCGGACGAGAAGGC
CATTGCAATTCTTACCAAGCTTCGCAAACAAAGGCTAGAGAGCATCGAGA
TGTTCCAGAAAGGCAATCGTGATGACATGGTACAGGCCGAACAAGCCGAG
CTGGCCATCTTGGAGGCATACTTGCCTCAGCTGGCTGATGAGGCCACGAC
GAGGGAGTGGGTCGCTGCTGCCATCGACGAAAGCGGGGCCAAAGCCAAGA
GTGACATGGGGAAGGTGATGGGGGTGATGATGAAGAAGCACAAGGGGAAG
ACGGACAACAAATTGGTATCGAAGCTGGTGGGGGAGATGCTGGGGTAGGT
GATGTAGGGTAGAAAGGACTAAGAACAAGGGGTGACATTTGATG
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Coding sequence (CDS) from alignment at scaffold_3:110335..110978-

>mRNA_38 ID=mRNA_38|Name=jgi.p|Nanoce1779_2|575990|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_3:110335..110978- (Nannochloropsis oceanica)
ATGAAACTCCTACTTCCGGTCCTCGTCATCTTCGCCTTGGCCAGCACTTC
CACGGCCTTTCTCCTCCCGTCCTGCCCCATCCCTTCCACGTTCAGCTGGA
GCAGCAGCAGCAGCAACACCCGCCTCGGTGCATCCATCTACGACGACATC
AATGCCGCCATGAAGCAAGCTATGAAGGATAAGGCTAAGGAAAAGCTCAG
TGCTTTGCGCAACATCAAATCTGCCTTTGGAACGGCCCTCAAAGAGGAAG
GCGCTGCTGAATCGCTGCCGGACGAGAAGGCCATTGCAATTCTTACCAAG
CTTCGCAAACAAAGGCTAGAGAGCATCGAGATGTTCCAGAAAGGCAATCG
TGATGACATGGTACAGGCCGAACAAGCCGAGCTGGCCATCTTGGAGGCAT
ACTTGCCTCAGCTGGCTGATGAGGCCACGACGAGGGAGTGGGTCGCTGCT
GCCATCGACGAAAGCGGGGCCAAAGCCAAGAGTGACATGGGGAAGGTGAT
GGGGGTGATGATGAAGAAGCACAAGGGGAAGACGGACAACAAATTGGTAT
CGAAGCTGGTGGGGGAGATGCTGGGGTAG
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Synonyms
Publications