jgi.p|Nanoce1779_2|585353, mRNA_3794 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585353
Unique Name	mRNA_3794
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1563
Alignment location	scaffold_8:4527..6554 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585439
Track	FilteredModels2
ProteinId	585353

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:4527..6554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585353	gene_3794	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585353	mRNA_3794-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3794	CDS_3794	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:4527..6554+
coding sequence from alignment at scaffold_8:4527..6554+

mRNA sequence

>mRNA_3794 ID=mRNA_3794|Name=jgi.p|Nanoce1779_2|585353|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
ACAGCAGGAAAAATTGCGCTCCCTCAATACAACATGCCATCGTCCCCTTC
AGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCTATCCTTGGCCAACTTTG
GCGCCTACATCCTGAACATTGCTGCAACTTACGTGATTGGGACGACAGGC
ACAATCGGCAAGACCAATAGTGAAGTCTCGGCCGCCTATCCCACGCTTTT
CACCCCCGCTGGCTGGGCTTTTGCCATTTGGGGCCTGATCTTCATCATGG
AGGGTGTCTTTGCCATCTACCAGCTCCTACCTTCCGTCCGCAGCACTACA
GCCGTCCAAAAAGGTGTGGGGCCCTGGTGGATTTTGATGGTGCTTCTCCA
GCTGGGCTGGTCTTTCAGCTTTGCCACCGAGTCCATCACCCTGTCCATGG
TCTTCATGCTTGGTATCTTCCTCTCCCTCCTCGCCCTTACCCTGTCCCTG
CGCAAGGTCCTGGGCCCCAAGCCCTCTCTCTCCCAGGCCATTTGCCTCAT
TTTCCCCTTCTCCCTCAATTTCGGTTGGATCACGGCCGCCATGCTCGCCA
ACGCCAATATCTTGGCTGTGTACCGGGACCCCGACCTCCTCCCCTCCCAC
GTGGCCACAGCCGTCTCTTCTTGCGTCGTGCTAGGACTTGCGGCCATCCT
GGGCGGCTTCCTCCTCCTCGACCCGGTTTTCTGCCTCGTTTTGGTCTGGG
CTGGCACGGCAGTTGCGAGGGAGCTGGCGGAACCTGTGGAGAGCATCGCA
GCCTCCTTCCCCCCCTCTGTGACGGACGGGCTCAGCCAGGCCGTCTTTGT
CCTGGTGGGCTTGGCGGCTCTGTGTGCCCTCCATGCCGCGGGGAAAGGGT
GCCTCGCCCGAAGGGCAACAGCAGCAGGAGGGGAGGGGGAGGGAAGAAAG
GACGAAGGGTCGTCGGCCTCGCCTGCGGGGATGCGAACGGCATCTCAGGC
GCTGCTCAAGCCGTAGATGGGAGGGGTAAGGGCAGGTAGGAAGGGAGAGG
ATTGACGGAGGGATGATGGTACGGATTTAGAGGGAGTGAGGGACTGTTGG
GCGGGACGGTCAAAGTCGGGCTGTGCAAGAAGATAGAGGAGATGGTCTTT
TTTCTGGAGTGTGCTGTGGTGGTTTTCGGGCGGTCAAAAGAAGGCAGCGG
CAAGATGGATACCAGCAGTGTAAGCAGCAGGAGATCAGGGCAGCTTGGCT
GATGCCTGCTTCGGCTACAGCAGGCACAATTGCCGAGAGAGAAAAATGAC
AAAGCAACCATGAAATGAGAGGGAATGAAAGGGATGGAAAGGGAAAGGAG
GGCCAAAAATCAAGAGAGGTAGAAGGTACGAAGCGATCAAGGAGGGGAGA
AGGAGAAGGAGGAGAAGTGAAGGGGGGTTAGTAGATAGCACAGAGATTTG
TAGCTAGACAGTGGAAGCAGGCAAGAAGAAAAGTAGGGGCAGCAGCAGCA
ACAGCAGCAGCATCGTACACTGAAAAGAGAAGATGCCAGCCACGAGGCCG
AGGCCATTACGTGAAAGAGGGGGGAAAGAACGAGAGAATGAGAACAGTGA
CGTTTGCGACAAA

protein sequence of jgi.p|Nanoce1779_2|585353

>mRNA_3794-protein ID=mRNA_3794-protein|Name=jgi.p|Nanoce1779_2|585353|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPSSPSATAAPGSSRLLSLANFGAYILNIAATYVIGTTGTIGKTNSEVSA
AYPTLFTPAGWAFAIWGLIFIMEGVFAIYQLLPSVRSTTAVQKGVGPWWI
LMVLLQLGWSFSFATESITLSMVFMLGIFLSLLALTLSLRKVLGPKPSLS
QAICLIFPFSLNFGWITAAMLANANILAVYRDPDLLPSHVATAVSSCVVL
GLAAILGGFLLLDPVFCLVLVWAGTAVARELAEPVESIAASFPPSVTDGL
SQAVFVLVGLAALCALHAAGKGCLARRATAAGGEGEGRKDEGSSASPAGM
RTASQALLKP*

mRNA from alignment at scaffold_8:4527..6554+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3794 ID=mRNA_3794|Name=jgi.p|Nanoce1779_2|585353|organism=Nannochloropsis oceanica|type=mRNA|length=2028bp|location=Sequence derived from alignment at scaffold_8:4527..6554+ (Nannochloropsis oceanica)
ACAGCAGGAAAAATTGCGCTCCCTCAATACAACATGCCATCGTCCCCTTC
AGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCTATCCTTGGCCAACTTTG
GCGCCTACATCCTGAACATTGCTGCAACTTACGTGATTGGGACGACAGGC
ACAATCGGCAAGACCAATAGTGAAGGTAAAAATTGCTTTTCCCCGAGTGC
TTCACACAGAACACTGGGAGAAGGGAGGGCGATCCTTGTGCCATATGCCA
GCGGGAATACCATGTGCTAGCCCTGGCACCTACCATTTTAGCCTAACTCT
GTTAATATCGTTAGATCTGCGTGCGCCTAGACAAGCCTTGAGCAGATGTT
TGGCACTGCCCTTTGGACATTGCGGGATGAACCTTCCTGCCCCCTCTTTC
CTCCCGCGCGAATGTCGCATTCTTTCTCATTTTTCCTGTATGATTCACAC
TTATGAAACAGGTCCTTGCTGTCAAGCATGAAGCCATTCATTCTTTCTCC
CTCCCATTCGCTCACTAATCTCCTACATCCCCATCATTATCTCTTAACTT
AGTCTCGGCCGCCTATCCCACGCTTTTCACCCCCGCTGGCTGGGCTTTTG
CCATTTGGGGCCTGATCTTCATCATGGAGGGTGTCTTTGCCATCTACCAG
CTCCTACCTTCCGTCCGCAGCACTACAGTACGCCCCCCCCCTTCCCTCCC
TGACTCCTTTTTTTTTCAGCCACATCCATTTCCCCTCTCTCCATTCCCCC
ACTCCCTTTACACAGGCCGTCCAAAAAGGTGTGGGGCCCTGGTGGATTTT
GATGGTGCTTCTCCAGCTGGGCTGGTCTTTCAGCTTTGCCACCGAGTCCA
TCACCCTGTCCATGGTCTTCATGCTTGGTATCTTCCTCTCCCTCCTCGCC
CTTACCCTGTCCCTGCGCAAGGTCCTGGGCCCCAAGCCCTCTCTCTCCCA
GGCCATTTGCCTCATTTTCCCCTTCTCCCTCAATTTCGGTTGGATCACGG
CCGCCATGCTCGCCAACGCCAATATCTTGGCTGTGTACCGGGACCCCGAC
CTCCTCCCCTCCCACGTGGCCACAGCCGTCTCTTCTTGCGTCGTGCTAGG
ACTTGCGGCCATCCTGGGCGGCTTCCTCCTCCTCGACCCGGTTTTCTGCC
TCGTTTTGGTCTGGGCTGGCACGGCAGTTGCGAGGGAGCTGGCGGAACCT
GTGGAGAGCATCGCAGCCTCCTTCCCCCCCTCTGTGACGGACGGGCTCAG
CCAGGCCGTCTTTGTCCTGGTGGGCTTGGCGGCTCTGTGTGCCCTCCATG
CCGCGGGGAAAGGGTGCCTCGCCCGAAGGGCAACAGCAGCAGGAGGGGAG
GGGGAGGGAAGAAAGGACGAAGGGTCGTCGGCCTCGCCTGCGGGGATGCG
AACGGCATCTCAGGCGCTGCTCAAGCCGTAGATGGGAGGGGTAAGGGCAG
GTAGGAAGGGAGAGGATTGACGGAGGGATGATGGTACGGATTTAGAGGGA
GTGAGGGACTGTTGGGCGGGACGGTCAAAGTCGGGCTGTGCAAGAAGATA
GAGGAGATGGTCTTTTTTCTGGAGTGTGCTGTGGTGGTTTTCGGGCGGTC
AAAAGAAGGCAGCGGCAAGATGGATACCAGCAGTGTAAGCAGCAGGAGAT
CAGGGCAGCTTGGCTGATGCCTGCTTCGGCTACAGCAGGCACAATTGCCG
AGAGAGAAAAATGACAAAGCAACCATGAAATGAGAGGGAATGAAAGGGAT
GGAAAGGGAAAGGAGGGCCAAAAATCAAGAGAGGTAGAAGGTACGAAGCG
ATCAAGGAGGGGAGAAGGAGAAGGAGGAGAAGTGAAGGGGGGTTAGTAGA
TAGCACAGAGATTTGTAGCTAGACAGTGGAAGCAGGCAAGAAGAAAAGTA
GGGGCAGCAGCAGCAACAGCAGCAGCATCGTACACTGAAAAGAGAAGATG
CCAGCCACGAGGCCGAGGCCATTACGTGAAAGAGGGGGGAAAGAACGAGA
GAATGAGAACAGTGACGTTTGCGACAAA

Coding sequence (CDS) from alignment at scaffold_8:4527..6554+

>mRNA_3794 ID=mRNA_3794|Name=jgi.p|Nanoce1779_2|585353|organism=Nannochloropsis oceanica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_8:4527..6554+ (Nannochloropsis oceanica)
ATGCCATCGTCCCCTTCAGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCT
ATCCTTGGCCAACTTTGGCGCCTACATCCTGAACATTGCTGCAACTTACG
TGATTGGGACGACAGGCACAATCGGCAAGACCAATAGTGAAGTCTCGGCC
GCCTATCCCACGCTTTTCACCCCCGCTGGCTGGGCTTTTGCCATTTGGGG
CCTGATCTTCATCATGGAGGGTGTCTTTGCCATCTACCAGCTCCTACCTT
CCGTCCGCAGCACTACAGCCGTCCAAAAAGGTGTGGGGCCCTGGTGGATT
TTGATGGTGCTTCTCCAGCTGGGCTGGTCTTTCAGCTTTGCCACCGAGTC
CATCACCCTGTCCATGGTCTTCATGCTTGGTATCTTCCTCTCCCTCCTCG
CCCTTACCCTGTCCCTGCGCAAGGTCCTGGGCCCCAAGCCCTCTCTCTCC
CAGGCCATTTGCCTCATTTTCCCCTTCTCCCTCAATTTCGGTTGGATCAC
GGCCGCCATGCTCGCCAACGCCAATATCTTGGCTGTGTACCGGGACCCCG
ACCTCCTCCCCTCCCACGTGGCCACAGCCGTCTCTTCTTGCGTCGTGCTA
GGACTTGCGGCCATCCTGGGCGGCTTCCTCCTCCTCGACCCGGTTTTCTG
CCTCGTTTTGGTCTGGGCTGGCACGGCAGTTGCGAGGGAGCTGGCGGAAC
CTGTGGAGAGCATCGCAGCCTCCTTCCCCCCCTCTGTGACGGACGGGCTC
AGCCAGGCCGTCTTTGTCCTGGTGGGCTTGGCGGCTCTGTGTGCCCTCCA
TGCCGCGGGGAAAGGGTGCCTCGCCCGAAGGGCAACAGCAGCAGGAGGGG
AGGGGGAGGGAAGAAAGGACGAAGGGTCGTCGGCCTCGCCTGCGGGGATG
CGAACGGCATCTCAGGCGCTGCTCAAGCCGTAGATGCCATCGTCCCCTTC
AGCTACCGCAGCCCCGGGGAGTAGCCGCCTCCTATCCTTGGCCAACTTTG
GCGCCTACATCCTGAACATTGCTGCAACTTACGTGATTGGGACGACAGGC
ACAATCGGCAAGACCAATAGTGAAGTCTCGGCCGCCTATCCCACGCTTTT
CACCCCCGCTGGCTGGGCTTTTGCCATTTGGGGCCTGATCTTCATCATGG
AGGGTGTCTTTGCCATCTACCAGCTCCTACCTTCCGTCCGCAGCACTACA
GCCGTCCAAAAAGGTGTGGGGCCCTGGTGGATTTTGATGGTGCTTCTCCA
GCTGGGCTGGTCTTTCAGCTTTGCCACCGAGTCCATCACCCTGTCCATGG
TCTTCATGCTTGGTATCTTCCTCTCCCTCCTCGCCCTTACCCTGTCCCTG
CGCAAGGTCCTGGGCCCCAAGCCCTCTCTCTCCCAGGCCATTTGCCTCAT
TTTCCCCTTCTCCCTCAATTTCGGTTGGATCACGGCCGCCATGCTCGCCA
ACGCCAATATCTTGGCTGTGTACCGGGACCCCGACCTCCTCCCCTCCCAC
GTGGCCACAGCCGTCTCTTCTTGCGTCGTGCTAGGACTTGCGGCCATCCT
GGGCGGCTTCCTCCTCCTCGACCCGGTTTTCTGCCTCGTTTTGGTCTGGG
CTGGCACGGCAGTTGCGAGGGAGCTGGCGGAACCTGTGGAGAGCATCGCA
GCCTCCTTCCCCCCCTCTGTGACGGACGGGCTCAGCCAGGCCGTCTTTGT
CCTGGTGGGCTTGGCGGCTCTGTGTGCCCTCCATGCCGCGGGGAAAGGGT
GCCTCGCCCGAAGGGCAACAGCAGCAGGAGGGGAGGGGGAGGGAAGAAAG
GACGAAGGGTCGTCGGCCTCGCCTGCGGGGATGCGAACGGCATCTCAGGC
GCTGCTCAAGCCGTAGATGCCATCGTCCCCTTCAGCTACCGCAGCCCCGG
GGAGTAGCCGCCTCCTATCCTTGGCCAACTTTGGCGCCTACATCCTGAAC
ATTGCTGCAACTTACGTGATTGGGACGACAGGCACAATCGGCAAGACCAA
TAGTGAAGTCTCGGCCGCCTATCCCACGCTTTTCACCCCCGCTGGCTGGG
CTTTTGCCATTTGGGGCCTGATCTTCATCATGGAGGGTGTCTTTGCCATC
TACCAGCTCCTACCTTCCGTCCGCAGCACTACAGCCGTCCAAAAAGGTGT
GGGGCCCTGGTGGATTTTGATGGTGCTTCTCCAGCTGGGCTGGTCTTTCA
GCTTTGCCACCGAGTCCATCACCCTGTCCATGGTCTTCATGCTTGGTATC
TTCCTCTCCCTCCTCGCCCTTACCCTGTCCCTGCGCAAGGTCCTGGGCCC
CAAGCCCTCTCTCTCCCAGGCCATTTGCCTCATTTTCCCCTTCTCCCTCA
ATTTCGGTTGGATCACGGCCGCCATGCTCGCCAACGCCAATATCTTGGCT
GTGTACCGGGACCCCGACCTCCTCCCCTCCCACGTGGCCACAGCCGTCTC
TTCTTGCGTCGTGCTAGGACTTGCGGCCATCCTGGGCGGCTTCCTCCTCC
TCGACCCGGTTTTCTGCCTCGTTTTGGTCTGGGCTGGCACGGCAGTTGCG
AGGGAGCTGGCGGAACCTGTGGAGAGCATCGCAGCCTCCTTCCCCCCCTC
TGTGACGGACGGGCTCAGCCAGGCCGTCTTTGTCCTGGTGGGCTTGGCGG
CTCTGTGTGCCCTCCATGCCGCGGGGAAAGGGTGCCTCGCCCGAAGGGCA
ACAGCAGCAGGAGGGGAGGGGGAGGGAAGAAAGGACGAAGGGTCGTCGGC
CTCGCCTGCGGGGATGCGAACGGCATCTCAGGCGCTGCTCAAGCCGTAG

Synonyms

Publications