jgi.p|Nanoce1779_2|585351, mRNA_3793 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585351
Unique NamemRNA_3793
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1525
Alignment locationscaffold_8:2190..3953 -

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Properties
Property NameValue
TranscriptId585437
TrackFilteredModels2
ProteinId585351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:2190..3953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585351gene_3793Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585351mRNA_3793-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3793CDS_3793Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3793 ID=mRNA_3793|Name=jgi.p|Nanoce1779_2|585351|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp
AGAACGATGACATCCTCCCCACCAGCCTCACCATCTGCACCTGAGAATCC
CTATAACCTATTGCCACCTAAGCGGCCAAATCCGCAGTACTGGCGGTATG
CAAGCCTGGCCGCTTTCATTCTCATTTGCTTCCAAGCCCCTTCAAGTGAC
TCGTGGGGCACCGCCCTCCGCCGCGCCTGCTGGGCGGCGTACTGGATGAC
CTACCTGGACACAAGCTATAAGGATGGCTCACGGGCCTGGCCCTGGTTTC
AGCGCTTAAGGATCTGGCGTTTGTACTGCGGCTATTTACAGGGCAAAGTA
ATTTGTACGGTGCCCTTGGACCCGGCACAGCAATTCATCTTCGCAGCTCA
TCCCCACGGCATTGGCACCTGGAATCATTTTCTAACCATGACTGACGGCT
GTCGCTTCCTCTCCTCATCCTACCCCCGCCCGCGGCTCGACCTGGGTGCG
ACGGTACTTTTCTTCATCCCCTTCTTAAAGGAAATTCTGCTCTGGCTGGG
CTGTGTGGATGCTGGAGCGTCCACGGCCCACGCAATCTTGGCGCGGGGCT
ACTCATCCCTCATTTACATTGGTGGAGAAAAGGAGCAGATTTTAACGCAG
CGAGGCAAAGACATCGTGGTGGTACGTCCCCGCAAGGGTTTTTGCAGGCT
GGCCCTGCAACATGACTGCCCCATCGTACCCGTCTACGCGTTTGGGGAGA
ACGATCTCTATCGCACATTCAACCACCTGAAGGACGTCCAACTGTGGGTG
GCCAGCACCTTCCAGCTGGCTTTTCCTCCTTGTTGGGGCGTCCCCTTCCT
CCCCTTCCTCCCTCTGCCAGTCCCCGTCACGGTGGTGATGGGCGAACCCT
TGCGGCCCAGAACAGGAGAAGGAAAGGAGGGAAGGGCTGGTGGAGAAAAA
GGAGTGAAGCCCACAAGGGAGGAGGTGGACGAGCTGCACACCCGGTACGT
GGAGGCCCTGCAGAGGTTGTTCGACGCACACAAGGGCAGGCACGGGGGGA
GGAGCGAAGAGGCCACCTTAGTGGTCAGGTGATGGGAAAGCCGATATAGA
AAGAGAAGTGAGAAGAAAGTACACTCACTCTATATTAAATCAGTAGCTTT
GAGTATTTCTTTGTAAGTGAAAGACTGGTGCTGCTTCCAGGACCGCTTTT
AGTAATGCTTCAAGCCAGACAACTTCAATATTATATTCAAACACGAATCG
CATAAAAACACCGCTTTATATAGAGGGGTGAGAATGAAGGTTTGATAATT
TAAATGGCCGTGCTTTGCTTGCCTTCAAACTGGCTTCAATTGTCCGGCCC
TTGGCCTCAAACTCTCGTCTGGACTGTCTCTTCTCACGCTTTCCTTCTCC
CTCCCCTTCGACCTCTGACCCCATGGACTCCCATCCAACCAAACCAACCT
TCTCCGACATTTCCTCTCCGATCTGTCTCCTACAATTTTATCCTCCCTTA
CCCTACTCTTTTATACTGATACTTTGCCTGTCCTTAAACCCCGCCTCGCG
CCCCCCTCCCCTCCCTCTTCCCCCT
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protein sequence of jgi.p|Nanoce1779_2|585351

>mRNA_3793-protein ID=mRNA_3793-protein|Name=jgi.p|Nanoce1779_2|585351|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MTSSPPASPSAPENPYNLLPPKRPNPQYWRYASLAAFILICFQAPSSDSW
GTALRRACWAAYWMTYLDTSYKDGSRAWPWFQRLRIWRLYCGYLQGKVIC
TVPLDPAQQFIFAAHPHGIGTWNHFLTMTDGCRFLSSSYPRPRLDLGATV
LFFIPFLKEILLWLGCVDAGASTAHAILARGYSSLIYIGGEKEQILTQRG
KDIVVVRPRKGFCRLALQHDCPIVPVYAFGENDLYRTFNHLKDVQLWVAS
TFQLAFPPCWGVPFLPFLPLPVPVTVVMGEPLRPRTGEGKEGRAGGEKGV
KPTREEVDELHTRYVEALQRLFDAHKGRHGGRSEEATLVVR*
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mRNA from alignment at scaffold_8:2190..3953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3793 ID=mRNA_3793|Name=jgi.p|Nanoce1779_2|585351|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp|location=Sequence derived from alignment at scaffold_8:2190..3953- (Nannochloropsis oceanica)
AGAACGATGACATCCTCCCCACCAGCCTCACCATCTGCACCTGAGAATCC
CTATAACCTATTGCCACCTAAGCGGCCAAATCCGCAGTACTGGCGGTATG
CAAGCCTGGCCGCTTTCATTCTCATTTGCTTCCAAGCCCCTTCAAGTGAC
TCGTGGGGCACCGCCCTCCGCCGCGCCTGCTGGGCGGCGTACTGGATGAC
CTACCTGGACACAAGCTATAAGGATGGCTCACGGGCCTGGCCCTGGTTTC
AGCGCTTAAGGATCTGGCGTTTGTACTGCGGCTATTTACAGGTGCGTGCA
TGTAAGAGTAAAGGAGGGAGGGAGGAAGGAAGAGAGGGGTGGTATTATGC
ATTACCGAAGGTCGATCAAGCAAGGAGAATAGATTGAGCTCACGTAGGAA
ATATTCGATTGGTCAGAACCAAAGGTATGTAGGTGCTGTTGTCATCGCTA
TGTCCTGCTCATCGTTACCATCCGCCCACTCATCCCCTGTCTCCCTCTCT
TCTTTCCTCCCTCCATCGCATCGACCAAAGGGCAAAGTAATTTGTACGGT
GCCCTTGGACCCGGCACAGCAATTCATCTTCGCAGCTCATCCCCACGGCA
TTGGCACCTGGAATCATTTTCTAACCATGACTGACGGCTGTCGCTTCCTC
TCCTCATCCTACCCCCGCCCGCGGCTCGACCTGGGTGCGACGGTACTTTT
CTTCATCCCCTTCTTAAAGGAAATTCTGCTCTGGCTGGGCTGTGTGGATG
CTGGAGCGTCCACGGCCCACGCAATCTTGGCGCGGGGCTACTCATCCCTC
ATTTACATTGGTGGAGAAAAGGAGCAGATTTTAACGCAGCGAGGCAAAGA
CATCGTGGTGGTACGTCCCCGCAAGGGTTTTTGCAGGCTGGCCCTGCAAC
ATGACTGCCCCATCGTACCCGTCTACGCGTTTGGGGAGAACGATCTCTAT
CGCACATTCAACCACCTGAAGGACGTCCAACTGTGGGTGGCCAGCACCTT
CCAGCTGGCTTTTCCTCCTTGTTGGGGCGTCCCCTTCCTCCCCTTCCTCC
CTCTGCCAGTCCCCGTCACGGTGGTGATGGGCGAACCCTTGCGGCCCAGA
ACAGGAGAAGGAAAGGAGGGAAGGGCTGGTGGAGAAAAAGGAGTGAAGCC
CACAAGGGAGGAGGTGGACGAGCTGCACACCCGGTACGTGGAGGCCCTGC
AGAGGTTGTTCGACGCACACAAGGGCAGGCACGGGGGGAGGAGCGAAGAG
GCCACCTTAGTGGTCAGGTGATGGGAAAGCCGATATAGAAAGAGAAGTGA
GAAGAAAGTACACTCACTCTATATTAAATCAGTAGCTTTGAGTATTTCTT
TGTAAGTGAAAGACTGGTGCTGCTTCCAGGACCGCTTTTAGTAATGCTTC
AAGCCAGACAACTTCAATATTATATTCAAACACGAATCGCATAAAAACAC
CGCTTTATATAGAGGGGTGAGAATGAAGGTTTGATAATTTAAATGGCCGT
GCTTTGCTTGCCTTCAAACTGGCTTCAATTGTCCGGCCCTTGGCCTCAAA
CTCTCGTCTGGACTGTCTCTTCTCACGCTTTCCTTCTCCCTCCCCTTCGA
CCTCTGACCCCATGGACTCCCATCCAACCAAACCAACCTTCTCCGACATT
TCCTCTCCGATCTGTCTCCTACAATTTTATCCTCCCTTACCCTACTCTTT
TATACTGATACTTTGCCTGTCCTTAAACCCCGCCTCGCGCCCCCCTCCCC
TCCCTCTTCCCCCT
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Coding sequence (CDS) from alignment at scaffold_8:2190..3953-

>mRNA_3793 ID=mRNA_3793|Name=jgi.p|Nanoce1779_2|585351|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_8:2190..3953- (Nannochloropsis oceanica)
GGCAAAGTAATTTGTACGGTGCCCTTGGACCCGGCACAGCAATTCATCTT
CGCAGCTCATCCCCACGGCATTGGCACCTGGAATCATTTTCTAACCATGA
CTGACGGCTGTCGCTTCCTCTCCTCATCCTACCCCCGCCCGCGGCTCGAC
CTGGGTGCGACGGTACTTTTCTTCATCCCCTTCTTAAAGGAAATTCTGCT
CTGGCTGGGCTGTGTGGATGCTGGAGCGTCCACGGCCCACGCAATCTTGG
CGCGGGGCTACTCATCCCTCATTTACATTGGTGGAGAAAAGGAGCAGATT
TTAACGCAGCGAGGCAAAGACATCGTGGTGGTACGTCCCCGCAAGGGTTT
TTGCAGGCTGGCCCTGCAACATGACTGCCCCATCGTACCCGTCTACGCGT
TTGGGGAGAACGATCTCTATCGCACATTCAACCACCTGAAGGACGTCCAA
CTGTGGGTGGCCAGCACCTTCCAGCTGGCTTTTCCTCCTTGTTGGGGCGT
CCCCTTCCTCCCCTTCCTCCCTCTGCCAGTCCCCGTCACGGTGGTGATGG
GCGAACCCTTGCGGCCCAGAACAGGAGAAGGAAAGGAGGGAAGGGCTGGT
GGAGAAAAAGGAGTGAAGCCCACAAGGGAGGAGGTGGACGAGCTGCACAC
CCGGTACGTGGAGGCCCTGCAGAGGTTGTTCGACGCACACAAGGGCAGGC
ACGGGGGGAGGAGCGAAGAGGCCACCTTAGTGGTCAGGTGAATGACATCC
TCCCCACCAGCCTCACCATCTGCACCTGAGAATCCCTATAACCTATTGCC
ACCTAAGCGGCCAAATCCGCAGTACTGGCGGTATGCAAGCCTGGCCGCTT
TCATTCTCATTTGCTTCCAAGCCCCTTCAAGTGACTCGTGGGGCACCGCC
CTCCGCCGCGCCTGCTGGGCGGCGTACTGGATGACCTACCTGGACACAAG
CTATAAGGATGGCTCACGGGCCTGGCCCTGGTTTCAGCGCTTAAGGATCT
GGCGTTTGTACTGCGGCTATTTACAGGGCAAAGTAATTTGTACGGTGCCC
TTGGACCCGGCACAGCAATTCATCTTCGCAGCTCATCCCCACGGCATTGG
CACCTGGAATCATTTTCTAACCATGACTGACGGCTGTCGCTTCCTCTCCT
CATCCTACCCCCGCCCGCGGCTCGACCTGGGTGCGACGGTACTTTTCTTC
ATCCCCTTCTTAAAGGAAATTCTGCTCTGGCTGGGCTGTGTGGATGCTGG
AGCGTCCACGGCCCACGCAATCTTGGCGCGGGGCTACTCATCCCTCATTT
ACATTGGTGGAGAAAAGGAGCAGATTTTAACGCAGCGAGGCAAAGACATC
GTGGTGGTACGTCCCCGCAAGGGTTTTTGCAGGCTGGCCCTGCAACATGA
CTGCCCCATCGTACCCGTCTACGCGTTTGGGGAGAACGATCTCTATCGCA
CATTCAACCACCTGAAGGACGTCCAACTGTGGGTGGCCAGCACCTTCCAG
CTGGCTTTTCCTCCTTGTTGGGGCGTCCCCTTCCTCCCCTTCCTCCCTCT
GCCAGTCCCCGTCACGGTGGTGATGGGCGAACCCTTGCGGCCCAGAACAG
GAGAAGGAAAGGAGGGAAGGGCTGGTGGAGAAAAAGGAGTGAAGCCCACA
AGGGAGGAGGTGGACGAGCTGCACACCCGGTACGTGGAGGCCCTGCAGAG
GTTGTTCGACGCACACAAGGGCAGGCACGGGGGGAGGAGCGAAGAGGCCA
CCTTAGTGGTCAGGTGAATGACATCCTCCCCACCAGCCTCACCATCTGCA
CCTGAGAATCCCTATAACCTATTGCCACCTAAGCGGCCAAATCCGCAGTA
CTGGCGGTATGCAAGCCTGGCCGCTTTCATTCTCATTTGCTTCCAAGCCC
CTTCAAGTGACTCGTGGGGCACCGCCCTCCGCCGCGCCTGCTGGGCGGCG
TACTGGATGACCTACCTGGACACAAGCTATAAGGATGGCTCACGGGCCTG
GCCCTGGTTTCAGCGCTTAAGGATCTGGCGTTTGTACTGCGGCTATTTAC
AG
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Synonyms
Publications