jgi.p|Nanoce1779_2|638414, mRNA_3792 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638414
Unique Name	mRNA_3792
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1446
Alignment location	scaffold_8:809..2254 +

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Properties


Property Name	Value
TranscriptId	638500
Track	FilteredModels2
ProteinId	638414

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:809..2254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638414	gene_3792	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638414	mRNA_3792-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3792	CDS_3792	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:809..2254+
coding sequence from alignment at scaffold_8:809..2254+

mRNA sequence

>mRNA_3792 ID=mRNA_3792|Name=jgi.p|Nanoce1779_2|638414|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
ATGGCCAACGAGCACCTCCATCCTTGGTCCGAGCTGGTGACGCAAGCCAT
GGTGGGCCATACCCTCCGCAATGGCGCCGAACCCAGCAAGCCCCTCAACC
CCCTTGCCAACCTCCTGGTAGGCGGCCGCATCCTCTCCATCCTCCACCTT
GCCCAGTGGCAGGCCCTCAACGAGGTGCTTGTGACGCGGAACGTTTCATC
GCTTACTGCCGCAAAGGAGCAGCTTCGCGCTCTCATGCCCTGTCTGCAAG
CTGCCTTGGCTGGGGCGGGCAAGCACACCCTTGAGACCCTTTTGCCCGCA
GGGGATGCCCAAGTTGGACTCCCCGCTCTATACGCTGCCCAATCAGGCGA
CGACAATAATGCCGATGTAGTCAGTGCCCGAGAGATAGGAGTTAAAGTGG
GCAAGGCCGTGCTATCATCTCGCAGCAACGACGGAGCCGCCACCGTCCTC
CCTCCCTACCTCGGCGCCAACTCCACGGCCGATGCCGGCAAATGGCGACC
CACTCCGCCCTTGTTTCTGCCGGGGGGCGCGGAGCAGTGGAGGTGGGTGA
CGCCCTATATTCTGACCAGTCCGCAAGAGCTGCGCACTCCTCCCCCCCCG
GGCCTCAGTACGGCCGCCTACAAGCAGGCATACTACGAGGTGAAATCGGT
GGGCAACGCTACGTCCAAGGAACGGCTCTTGAAGGACACGGAGGGCGCGG
TCTTCTGGTGTGAGCAACCGGACGCTATCATCTTTGCGATAGTGGGCCGC
GTCACGGAGAAGATGGACGTGCTGGAGGCCTCGCGCGTGTATGCTATGGC
GGCCGTGGCGGGATTAGACGCCCGGGTGGCCTCCATGGACAGCAAATACT
TTTACAGCACCTGGCGGCCCGTGACGGCCCTGCCCCTCGGCAACGGTGGG
ATACTGACGGCAGTGCCTGATTTCACCCCGCTGTTGGCTACCCCGCCTAC
GCCCGAGTTTCCATCGGCCCACGCGGTGCACGGCGAGGCGATTATGGAGG
TGCTGCGGCAGGCGAGGGGGGGAGGGAAGGGTGATGAGGGGGCGGAGAAG
GCGGCCGACCAGCTGGACGTCAACTTGACGACACCCACGGTGAGAGGGTT
GGAAGCCGGGAAAAGAAGCTTGCAGGCAACAACTGCAGCACCTACAGCAG
CAGAAGCGGCGGATGTCATACCGGTGGTGACGAGGCAGTACAGCTCGCTG
ACTGCAGTGAGTGAAGACCTAGCCTACTCCCGTATCTACGGCGGTATCCA
CTACCGCTTTACGGCCGACAAAAGCTTGAAGCTGGGAACCAGCGTTGGGC
AGCGGGTTGTGGATGCCTTCGATGCTAAGTTCACGAAAGTGGGAATGATG
GGAAAGGAGCAGCAAAAGGAGGAGAGCAAGAAGGGGGAAGAGGGAGGGGA
GGGGGGCGCGAGGCGGGGTTTAAGGACAGGCAAAGTATCAGTATAA

protein sequence of jgi.p|Nanoce1779_2|638414

>mRNA_3792-protein ID=mRNA_3792-protein|Name=jgi.p|Nanoce1779_2|638414|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MANEHLHPWSELVTQAMVGHTLRNGAEPSKPLNPLANLLVGGRILSILHL
AQWQALNEVLVTRNVSSLTAAKEQLRALMPCLQAALAGAGKHTLETLLPA
GDAQVGLPALYAAQSGDDNNADVVSAREIGVKVGKAVLSSRSNDGAATVL
PPYLGANSTADAGKWRPTPPLFLPGGAEQWRWVTPYILTSPQELRTPPPP
GLSTAAYKQAYYEVKSVGNATSKERLLKDTEGAVFWCEQPDAIIFAIVGR
VTEKMDVLEASRVYAMAAVAGLDARVASMDSKYFYSTWRPVTALPLGNGG
ILTAVPDFTPLLATPPTPEFPSAHAVHGEAIMEVLRQARGGGKGDEGAEK
AADQLDVNLTTPTVRGLEAGKRSLQATTAAPTAAEAADVIPVVTRQYSSL
TAVSEDLAYSRIYGGIHYRFTADKSLKLGTSVGQRVVDAFDAKFTKVGMM
GKEQQKEESKKGEEGGEGGARRGLRTGKVSV*

mRNA from alignment at scaffold_8:809..2254+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3792 ID=mRNA_3792|Name=jgi.p|Nanoce1779_2|638414|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at scaffold_8:809..2254+ (Nannochloropsis oceanica)
ATGGCCAACGAGCACCTCCATCCTTGGTCCGAGCTGGTGACGCAAGCCAT
GGTGGGCCATACCCTCCGCAATGGCGCCGAACCCAGCAAGCCCCTCAACC
CCCTTGCCAACCTCCTGGTAGGCGGCCGCATCCTCTCCATCCTCCACCTT
GCCCAGTGGCAGGCCCTCAACGAGGTGCTTGTGACGCGGAACGTTTCATC
GCTTACTGCCGCAAAGGAGCAGCTTCGCGCTCTCATGCCCTGTCTGCAAG
CTGCCTTGGCTGGGGCGGGCAAGCACACCCTTGAGACCCTTTTGCCCGCA
GGGGATGCCCAAGTTGGACTCCCCGCTCTATACGCTGCCCAATCAGGCGA
CGACAATAATGCCGATGTAGTCAGTGCCCGAGAGATAGGAGTTAAAGTGG
GCAAGGCCGTGCTATCATCTCGCAGCAACGACGGAGCCGCCACCGTCCTC
CCTCCCTACCTCGGCGCCAACTCCACGGCCGATGCCGGCAAATGGCGACC
CACTCCGCCCTTGTTTCTGCCGGGGGGCGCGGAGCAGTGGAGGTGGGTGA
CGCCCTATATTCTGACCAGTCCGCAAGAGCTGCGCACTCCTCCCCCCCCG
GGCCTCAGTACGGCCGCCTACAAGCAGGCATACTACGAGGTGAAATCGGT
GGGCAACGCTACGTCCAAGGAACGGCTCTTGAAGGACACGGAGGGCGCGG
TCTTCTGGTGTGAGCAACCGGACGCTATCATCTTTGCGATAGTGGGCCGC
GTCACGGAGAAGATGGACGTGCTGGAGGCCTCGCGCGTGTATGCTATGGC
GGCCGTGGCGGGATTAGACGCCCGGGTGGCCTCCATGGACAGCAAATACT
TTTACAGCACCTGGCGGCCCGTGACGGCCCTGCCCCTCGGCAACGGTGGG
ATACTGACGGCAGTGCCTGATTTCACCCCGCTGTTGGCTACCCCGCCTAC
GCCCGAGTTTCCATCGGCCCACGCGGTGCACGGCGAGGCGATTATGGAGG
TGCTGCGGCAGGCGAGGGGGGGAGGGAAGGGTGATGAGGGGGCGGAGAAG
GCGGCCGACCAGCTGGACGTCAACTTGACGACACCCACGGTGAGAGGGTT
GGAAGCCGGGAAAAGAAGCTTGCAGGCAACAACTGCAGCACCTACAGCAG
CAGAAGCGGCGGATGTCATACCGGTGGTGACGAGGCAGTACAGCTCGCTG
ACTGCAGTGAGTGAAGACCTAGCCTACTCCCGTATCTACGGCGGTATCCA
CTACCGCTTTACGGCCGACAAAAGCTTGAAGCTGGGAACCAGCGTTGGGC
AGCGGGTTGTGGATGCCTTCGATGCTAAGTTCACGAAAGTGGGAATGATG
GGAAAGGAGCAGCAAAAGGAGGAGAGCAAGAAGGGGGAAGAGGGAGGGGA
GGGGGGCGCGAGGCGGGGTTTAAGGACAGGCAAAGTATCAGTATAA

Coding sequence (CDS) from alignment at scaffold_8:809..2254+

>mRNA_3792 ID=mRNA_3792|Name=jgi.p|Nanoce1779_2|638414|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_8:809..2254+ (Nannochloropsis oceanica)
ATGGCCAACGAGCACCTCCATCCTTGGTCCGAGCTGGTGACGCAAGCCAT
GGTGGGCCATACCCTCCGCAATGGCGCCGAACCCAGCAAGCCCCTCAACC
CCCTTGCCAACCTCCTGGTAGGCGGCCGCATCCTCTCCATCCTCCACCTT
GCCCAGTGGCAGGCCCTCAACGAGGTGCTTGTGACGCGGAACGTTTCATC
GCTTACTGCCGCAAAGGAGCAGCTTCGCGCTCTCATGCCCTGTCTGCAAG
CTGCCTTGGCTGGGGCGGGCAAGCACACCCTTGAGACCCTTTTGCCCGCA
GGGGATGCCCAAGTTGGACTCCCCGCTCTATACGCTGCCCAATCAGGCGA
CGACAATAATGCCGATGTAGTCAGTGCCCGAGAGATAGGAGTTAAAGTGG
GCAAGGCCGTGCTATCATCTCGCAGCAACGACGGAGCCGCCACCGTCCTC
CCTCCCTACCTCGGCGCCAACTCCACGGCCGATGCCGGCAAATGGCGACC
CACTCCGCCCTTGTTTCTGCCGGGGGGCGCGGAGCAGTGGAGGTGGGTGA
CGCCCTATATTCTGACCAGTCCGCAAGAGCTGCGCACTCCTCCCCCCCCG
GGCCTCAGTACGGCCGCCTACAAGCAGGCATACTACGAGGTGAAATCGGT
GGGCAACGCTACGTCCAAGGAACGGCTCTTGAAGGACACGGAGGGCGCGG
TCTTCTGGTGTGAGCAACCGGACGCTATCATCTTTGCGATAGTGGGCCGC
GTCACGGAGAAGATGGACGTGCTGGAGGCCTCGCGCGTGTATGCTATGGC
GGCCGTGGCGGGATTAGACGCCCGGGTGGCCTCCATGGACAGCAAATACT
TTTACAGCACCTGGCGGCCCGTGACGGCCCTGCCCCTCGGCAACGGTGGG
ATACTGACGGCAGTGCCTGATTTCACCCCGCTGTTGGCTACCCCGCCTAC
GCCCGAGTTTCCATCGGCCCACGCGGTGCACGGCGAGGCGATTATGGAGG
TGCTGCGGCAGGCGAGGGGGGGAGGGAAGGGTGATGAGGGGGCGGAGAAG
GCGGCCGACCAGCTGGACGTCAACTTGACGACACCCACGGTGAGAGGGTT
GGAAGCCGGGAAAAGAAGCTTGCAGGCAACAACTGCAGCACCTACAGCAG
CAGAAGCGGCGGATGTCATACCGGTGGTGACGAGGCAGTACAGCTCGCTG
ACTGCAGTGAGTGAAGACCTAGCCTACTCCCGTATCTACGGCGGTATCCA
CTACCGCTTTACGGCCGACAAAAGCTTGAAGCTGGGAACCAGCGTTGGGC
AGCGGGTTGTGGATGCCTTCGATGCTAAGTTCACGAAAGTGGGAATGATG
GGAAAGGAGCAGCAAAAGGAGGAGAGCAAGAAGGGGGAAGAGGGAGGGGA
GGGGGGCGCGAGGCGGGGTTTAAGGACAGGCAAAGTATCAGTATAA

Synonyms

Publications