jgi.p|Nanoce1779_2|583459, mRNA_3791 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583459
Unique NamemRNA_3791
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1045
Alignment locationscaffold_6:1266100..1267637 -

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Properties
Property NameValue
TranscriptId583545
TrackFilteredModels2
ProteinId583459
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1266100..1267637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583459gene_3791Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583459mRNA_3791-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3791CDS_3791Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3791 ID=mRNA_3791|Name=jgi.p|Nanoce1779_2|583459|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
AGACAGGTTGGAGTCTCGCATTTCTAAGTCATGCTTTCCACTGGCCTGCC
CCCGGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAGCCAACATG
CCTACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCATTGAAAAT
GATTTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGTATCAATACAAG
CGCCACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCACGGACGAGG
GTAGTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCTCTGTGCAAAGC
GTGGTCTCGCAAGTCCAAGACTATATTCACCACATGCCAAGGTGGCAGTA
CCGCTGCATGTTGACGTCCATCTTCCTTCTTGCACTCGCCCTGATCATGG
TCCTGCTCTCCTCTGTGCTTTATGGCTTCAACATGCACCATCCCCACGTC
CAAGTGGTCGACGTCCAACTCCTCTACCCCTTTCCTTTCGCCGATGCAAG
TGGCAACATCCCCGTGGCCTCGACCATGCTATTCTCAAATCGCAACCCCT
TTCCCGCCGTCACCAAGCCCACCGACATCCACATCTATGCCTTGCCCTCA
CGCTCCCCCGCCTCCCTCCTCGGCACCACATCCATGCCCGGCTTCGAGCT
GGCAGCGCACGAGCAACGGCGCGCCTTGAACAGCACGCTGAGCATTCGTG
ACATCGGGAGTGTGGATGGAGGACAAGCCTTAGTCAAGGCTGTTTTGGAG
GGCGAGAACAACTTCATGTATGCCACCAGCGTTGGTGACATTACCGTCAA
GGTGCTGGGCCTGATTCCCATAAGTCGATCTTATAAAAATGAATGCACCG
TGCTCAAGAAGTGGGGTGCTGACTCATTCACCATGAGTGACTGCTACGGC
CACTTTGCATAAGGGAGGGAAGAGAGGGAGGGCGGGGGAGTGTGTCCTTA
TGCTCGTGTGAGCCAACGCTTCTAAAATAAAATTGGTGCGTGGCACGGGG
AGAAACCTCTCCAAATGCTAAGCAAGATAAATTGAGGAAATAACC
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protein sequence of jgi.p|Nanoce1779_2|583459

>mRNA_3791-protein ID=mRNA_3791-protein|Name=jgi.p|Nanoce1779_2|583459|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MLSTGLPPDQDVKEDLPPPSSQHAYITLSDGKEVTEGIENDFKDGSRDGR
TDSINTSATTSSLPSKREASTDEGSCPSPPQLSLISSVQSVVSQVQDYIH
HMPRWQYRCMLTSIFLLALALIMVLLSSVLYGFNMHHPHVQVVDVQLLYP
FPFADASGNIPVASTMLFSNRNPFPAVTKPTDIHIYALPSRSPASLLGTT
SMPGFELAAHEQRRALNSTLSIRDIGSVDGGQALVKAVLEGENNFMYATS
VGDITVKVLGLIPISRSYKNECTVLKKWGADSFTMSDCYGHFA*
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mRNA from alignment at scaffold_6:1266100..1267637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3791 ID=mRNA_3791|Name=jgi.p|Nanoce1779_2|583459|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_6:1266100..1267637- (Nannochloropsis oceanica)
AGACAGGTTGGAGTCTCGCATTTCTAAGTCATGCTTTCCACTGGCCTGCC
CCCGGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAGCCAACATG
CCTACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCATTGAAAAT
GATTTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGTATCAATACAAG
CGCCACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCACGGACGAGG
GTAGTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCTCTGTGCAAAGC
GTGGTCTCGCAAGTCCAAGACTATATTCACCACATGTAGGTTTTGCTAGG
GTTTGTAATGATTTATTACCCGGGTACGAATATCTGAGGTCGACGTGCAT
GTGCCCACCCTGCCTCCCTCCTTCCCCCCATCTCTGCCTCCCTGTCTTCC
TCCCTTTACATCCTACCCCAGGCCAAGGTGGCAGTACCGCTGCATGTTGA
CGTCCATCTTCCTTCTTGCACTCGCCCTGATCATGGTCCTGCTCTCCTCT
GTGCTTTATGGCTTCAACATGCACCATCCCCACGTCCAAGTGGTGAGGGA
GAGGGGAAGGGGGGAACGGAGGAAGGAAGAGACTGGAATGACGATAGCGT
GGTTGGTTTTAGCGGTGCTTAATTAATTTCCCTACCTTCTCCGACTGCCT
GGCTAGTCATTGCCCTTACCTCTATCTCCTCCCCTTTTCACTCAACAATC
CCTTCCTACCACCTTAAAATAGGTCGACGTCCAACTCCTCTACCCCTTTC
CTTTCGCCGATGCAAGTGGCAACATCCCCGTGGCCTCGACCATGCTATTC
TCAAATCGCAACCCCTTTCCCGCCGTCACCAAGCCCACCGACATCCACAT
CTATGCCTTGCCCTCACGCTCCCCCGCCTCCCTCCTCGGCACCACATCCA
TGCCCGGCTTCGAGCTGGCAGCGCACGAGCAACGGCGCGCCTTGAACAGC
ACGCTGAGCATTCGTGACATCGGGAGTGTGGATGGAGGACAAGCCTTAGT
CAAGGCTGTTTTGGAGGTGAGTTGTGGAACTACCTCCTGTTTCCAGGCTC
CTTTCCTCTCCGCCTTCCATTCCGACATCCTGTCTTTGTAGCACACCATT
TTCAGATGCTATGCCTTAATGTCATCAACCGCTCTTGAGAATAGAAATAA
CACCTCCCTCCCTCTCTTCCTTGTTACCTTCCGCTCCTCCCAGGGCGAGA
ACAACTTCATGTATGCCACCAGCGTTGGTGACATTACCGTCAAGGTGCTG
GGCCTGATTCCCATAAGTCGATCTTATAAAAATGAATGCACCGTGCTCAA
GAAGTGGGGTGCTGACTCATTCACCATGAGTGACTGCTACGGCCACTTTG
CATAAGGGAGGGAAGAGAGGGAGGGCGGGGGAGTGTGTCCTTATGCTCGT
GTGAGCCAACGCTTCTAAAATAAAATTGGTGCGTGGCACGGGGAGAAACC
TCTCCAAATGCTAAGCAAGATAAATTGAGGAAATAACC
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Coding sequence (CDS) from alignment at scaffold_6:1266100..1267637-

>mRNA_3791 ID=mRNA_3791|Name=jgi.p|Nanoce1779_2|583459|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_6:1266100..1267637- (Nannochloropsis oceanica)
GGCGAGAACAACTTCATGTATGCCACCAGCGTTGGTGACATTACCGTCAA
GGTGCTGGGCCTGATTCCCATAAGTCGATCTTATAAAAATGAATGCACCG
TGCTCAAGAAGTGGGGTGCTGACTCATTCACCATGAGTGACTGCTACGGC
CACTTTGCATAAGTCGACGTCCAACTCCTCTACCCCTTTCCTTTCGCCGA
TGCAAGTGGCAACATCCCCGTGGCCTCGACCATGCTATTCTCAAATCGCA
ACCCCTTTCCCGCCGTCACCAAGCCCACCGACATCCACATCTATGCCTTG
CCCTCACGCTCCCCCGCCTCCCTCCTCGGCACCACATCCATGCCCGGCTT
CGAGCTGGCAGCGCACGAGCAACGGCGCGCCTTGAACAGCACGCTGAGCA
TTCGTGACATCGGGAGTGTGGATGGAGGACAAGCCTTAGTCAAGGCTGTT
TTGGAGGCCAAGGTGGCAGTACCGCTGCATGTTGACGTCCATCTTCCTTC
TTGCACTCGCCCTGATCATGGTCCTGCTCTCCTCTGTGCTTTATGGCTTC
AACATGCACCATCCCCACGTCCAAGTGATGCTTTCCACTGGCCTGCCCCC
GGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAGCCAACATGCCT
ACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCATTGAAAATGAT
TTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGTATCAATACAAGCGC
CACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCACGGACGAGGGTA
GTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCTCTGTGCAAAGCGTG
GTCTCGCAAGTCCAAGACTATATTCACCACATGGCGAGAACAACTTCATG
TATGCCACCAGCGTTGGTGACATTACCGTCAAGGTGCTGGGCCTGATTCC
CATAAGTCGATCTTATAAAAATGAATGCACCGTGCTCAAGAAGTGGGGTG
CTGACTCATTCACCATGAGTGACTGCTACGGCCACTTTGCATAAGTCGAC
GTCCAACTCCTCTACCCCTTTCCTTTCGCCGATGCAAGTGGCAACATCCC
CGTGGCCTCGACCATGCTATTCTCAAATCGCAACCCCTTTCCCGCCGTCA
CCAAGCCCACCGACATCCACATCTATGCCTTGCCCTCACGCTCCCCCGCC
TCCCTCCTCGGCACCACATCCATGCCCGGCTTCGAGCTGGCAGCGCACGA
GCAACGGCGCGCCTTGAACAGCACGCTGAGCATTCGTGACATCGGGAGTG
TGGATGGAGGACAAGCCTTAGTCAAGGCTGTTTTGGAGGCCAAGGTGGCA
GTACCGCTGCATGTTGACGTCCATCTTCCTTCTTGCACTCGCCCTGATCA
TGGTCCTGCTCTCCTCTGTGCTTTATGGCTTCAACATGCACCATCCCCAC
GTCCAAGTGATGCTTTCCACTGGCCTGCCCCCGGACCAAGACGTCAAGGA
AGATCTGCCCCCGCCATCCAGCCAACATGCCTACATCACTTTGTCAGACG
GGAAAGAGGTCACAGAAGGCATTGAAAATGATTTCAAAGATGGGAGCCGT
GATGGGAGGACCGACAGTATCAATACAAGCGCCACAACCAGCAGCCTGCC
GTCGAAAAGAGAAGCGAGCACGGACGAGGGTAGTTGCCCTTCACCCCCGC
AATTATCCCTTATAAGCTCTGTGCAAAGCGTGGTCTCGCAAGTCCAAGAC
TATATTCACCACATGGCGAGAACAACTTCATGTATGCCACCAGCGTTGGT
GACATTACCGTCAAGGTGCTGGGCCTGATTCCCATAAGTCGATCTTATAA
AAATGAATGCACCGTGCTCAAGAAGTGGGGTGCTGACTCATTCACCATGA
GTGACTGCTACGGCCACTTTGCATAAGTCGACGTCCAACTCCTCTACCCC
TTTCCTTTCGCCGATGCAAGTGGCAACATCCCCGTGGCCTCGACCATGCT
ATTCTCAAATCGCAACCCCTTTCCCGCCGTCACCAAGCCCACCGACATCC
ACATCTATGCCTTGCCCTCACGCTCCCCCGCCTCCCTCCTCGGCACCACA
TCCATGCCCGGCTTCGAGCTGGCAGCGCACGAGCAACGGCGCGCCTTGAA
CAGCACGCTGAGCATTCGTGACATCGGGAGTGTGGATGGAGGACAAGCCT
TAGTCAAGGCTGTTTTGGAGGCCAAGGTGGCAGTACCGCTGCATGTTGAC
GTCCATCTTCCTTCTTGCACTCGCCCTGATCATGGTCCTGCTCTCCTCTG
TGCTTTATGGCTTCAACATGCACCATCCCCACGTCCAAGTGATGCTTTCC
ACTGGCCTGCCCCCGGACCAAGACGTCAAGGAAGATCTGCCCCCGCCATC
CAGCCAACATGCCTACATCACTTTGTCAGACGGGAAAGAGGTCACAGAAG
GCATTGAAAATGATTTCAAAGATGGGAGCCGTGATGGGAGGACCGACAGT
ATCAATACAAGCGCCACAACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAG
CACGGACGAGGGTAGTTGCCCTTCACCCCCGCAATTATCCCTTATAAGCT
CTGTGCAAAGCGTGGTCTCGCAAGTCCAAGACTATATTCACCACATGGCG
AGAACAACTTCATGTATGCCACCAGCGTTGGTGACATTACCGTCAAGGTG
CTGGGCCTGATTCCCATAAGTCGATCTTATAAAAATGAATGCACCGTGCT
CAAGAAGTGGGGTGCTGACTCATTCACCATGAGTGACTGCTACGGCCACT
TTGCATAAGTCGACGTCCAACTCCTCTACCCCTTTCCTTTCGCCGATGCA
AGTGGCAACATCCCCGTGGCCTCGACCATGCTATTCTCAAATCGCAACCC
CTTTCCCGCCGTCACCAAGCCCACCGACATCCACATCTATGCCTTGCCCT
CACGCTCCCCCGCCTCCCTCCTCGGCACCACATCCATGCCCGGCTTCGAG
CTGGCAGCGCACGAGCAACGGCGCGCCTTGAACAGCACGCTGAGCATTCG
TGACATCGGGAGTGTGGATGGAGGACAAGCCTTAGTCAAGGCTGTTTTGG
AGGCCAAGGTGGCAGTACCGCTGCATGTTGACGTCCATCTTCCTTCTTGC
ACTCGCCCTGATCATGGTCCTGCTCTCCTCTGTGCTTTATGGCTTCAACA
TGCACCATCCCCACGTCCAAGTGATGCTTTCCACTGGCCTGCCCCCGGAC
CAAGACGTCAAGGAAGATCTGCCCCCGCCATCCAGCCAACATGCCTACAT
CACTTTGTCAGACGGGAAAGAGGTCACAGAAGGCATTGAAAATGATTTCA
AAGATGGGAGCCGTGATGGGAGGACCGACAGTATCAATACAAGCGCCACA
ACCAGCAGCCTGCCGTCGAAAAGAGAAGCGAGCACGGACGAGGGTAGTTG
CCCTTCACCCCCGCAATTATCCCTTATAAGCTCTGTGCAAAGCGTGGTCT
CGCAAGTCCAAGACTATATTCACCACAT
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Synonyms
Publications