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Properties
| Property Name | Value |
|---|
| TranscriptId | 583542 |
| Track | FilteredModels2 |
| ProteinId | 583456 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:1262789..1265314 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3790 ID=mRNA_3790|Name=jgi.p|Nanoce1779_2|583456|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp
ACAGCCACAAGCAACAGGTCGGAACAAACCTTGTCCGTCTTCAGACAACA
ATGTCCTCGCGAAGGCACTATTCAGATGAGTTGCCCTCCTCTATGCACGC
CCACACCGCTGTCTTCACGGATGAGGAGATGGGCGGCGAGAGTAGCAACA
CCGCCAACACAAAGGTGAATCCTAACAGCCTTGGCAGCCCTCGGAGCCAT
CAAAATTATGACGGCAACGCCGGCAAGTGGGTGGATGGGCGTTCCTCCCG
CCTGCCATGGGACGACGCCGACAGGGAGTATTATCGACCCAGTCCAACCC
CACGCCATGTGCCATCAACCACCAACAACTTCGAGATACGGGCCCTTCCG
GAGAGAGAACGACGCTCGGACACAATCTGCGGCATGCCTAAATGGGTGGC
TTCCATTGTCTTTCTCGGTTTTCTTGCTCTAGCCATTACAATTGCGGTAT
CGGTTATCATGGGTTGGAACATGGTCGCGCCACGCGTGCAAATGGTGAAC
TTCCAATTTCCCCTTCCCTATCCGTATTCGGACGCCACAGGCAGGATCCC
CGTCATCTCCACGCTGCTCCTCTCGAATTTTAACAGGTTTAGAATTACCA
CCTGGCCCACCACAATGCAAATCTTCGCCCTCCCTAGCCGCTCCCCCGCC
TCCCTCCTGGCCACTGCCCCTGTACAGTTTATGCAGCTGGCGCCCCATCA
GAAGAGTCAGCCGATGCAGAGCTTTTTCGATATTTCCAATATCAATGGCG
TGGAAGGAGGCGTGTTTATCTCCAACGCTATCATATCGGGCGATGTGAAC
TACATGTACACAACCAGCATCATCCGCGTCCGTGCCTGGGCCCTGAACTT
CATCCCCGTGACGCGCTCCTACAAGAGCGACTGCACCATCATGAGGAGGT
GGGGTGTCAATCCCGTCACCACCAGCGACTGCTTTGGACACTTCATACGG
TAGTCGCGTCACGGACAGTGAATGCCACGGACTTGTCGTTGGTCAAGGGG
CAAAGGAGGGAGAGATGAAGGGAGGGAGGAAACTTCTGGAGTATTTGACT
GGGAAAAGAGACAGAAAAGAGGATCCAGTGACATGACGGAGAGAAGGAGA
AAGGAAAAAGAAAAAAGACAGATGAATATGAACGAGAAGAAATGAGAAGA
AAAAGAAGAGGAGGAGGAGGAAAAAAGATGAAGAAGAAGGAAGGGGAGGA
GAAGGGAAAGAAGAAGAAAAAAGAAAAAGAAGAGAGAGAATAAGAGGGAG
AGGAAGAGGAAGTGAAAGCGAGGAGGACGAAGAGAGAGAGGAAGAGGACA
AAAGTATCTACTGTCGAGAGAGGATGAAAGTAACTACTGTTGCCCTAAGC
AAGTGGGGCAATGATGCCCTCACTATATAACCAGGCCAGATGTGCTCACT
ACCACGTACCTACCGGTGATTGCTGCATTTGGTTGCCAGGGAGAGACAAA
GGGAGGAAGGGGGGACGGAGGGACGGAGGGTATGCGGCTTTGAAAGCTTC
ATAACTCTTATTTCCTGTGTCCTATGGGAGGACATATACTATTTTACAAT
TAACTTATGAATTATGTGAGTGAAGAGAGCGCCAATTATGTATTGATTGA
ATGAAGACAAAGCAACGCGTGCAGACAGTTGGGAAAGGATGTCCGGGTGC
GACACTTGAAAAAGGGGCCAGGTTAGCGATTGAGAGAATGTAAGTGAGAG
TCAAACGAAGGTGAGAGAGCGAATGAGCACAGAACGGCGACTGTTCCGCT
GGAGAAGGATGCTGCTGCTGCGGTTGCTGCTACGGCCAGCCCTGTCGCAC
ATCACATGGTGACTGAAGCGTGGATGCGGAGATCAGCCTTTTGCTCCAGT
GCATGAATTCAATGCTCAAACATCGGGAAGATTGCCGTGGCGTGTCTGTG
CTGACTCTCTTGCTTTTTGATGACGGAAGGGCAAGTTTGATTCGAAGTAC
TGAGCAGTGAGAGCTATACCAAGTGACATAAAAAAAGTTATTTACATATA
TGTGGTGAAACACGAAAAGAATAAAGAGAGAAAGACGACTGAAA back to topprotein sequence of jgi.p|Nanoce1779_2|583456 >mRNA_3790-protein ID=mRNA_3790-protein|Name=jgi.p|Nanoce1779_2|583456|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSSRRHYSDELPSSMHAHTAVFTDEEMGGESSNTANTKVNPNSLGSPRSH
QNYDGNAGKWVDGRSSRLPWDDADREYYRPSPTPRHVPSTTNNFEIRALP
ERERRSDTICGMPKWVASIVFLGFLALAITIAVSVIMGWNMVAPRVQMVN
FQFPLPYPYSDATGRIPVISTLLLSNFNRFRITTWPTTMQIFALPSRSPA
SLLATAPVQFMQLAPHQKSQPMQSFFDISNINGVEGGVFISNAIISGDVN
YMYTTSIIRVRAWALNFIPVTRSYKSDCTIMRRWGVNPVTTSDCFGHFIR
* back to topmRNA from alignment at scaffold_6:1262789..1265314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3790 ID=mRNA_3790|Name=jgi.p|Nanoce1779_2|583456|organism=Nannochloropsis oceanica|type=mRNA|length=2526bp|location=Sequence derived from alignment at scaffold_6:1262789..1265314- (Nannochloropsis oceanica)
ACAGCCACAAGCAACAGGTCGGAACAAACCTTGTCCGTCTTCAGACAACA
ATGTCCTCGCGAAGGCACTATTCAGATGAGTTGCCCTCCTCTATGCACGC
CCACACCGCTGTCTTCACGGATGAGGAGATGGGCGGCGAGAGTAGCAACA
CCGCCAACACAAAGGTGAATCCTAACAGCCTTGGCAGCCCTCGGAGCCAT
CAAAATTATGACGGCAACGCCGGCAAGTGGGTGGATGGGCGTTCCTCCCG
CCTGCCATGGGACGACGCCGACAGGGAGTATTATCGACCCAGTCCAACCC
CACGCCATGTGCCATCAACCACCAACAACTTCGAGATACGGGCCCTTCCG
GAGAGAGAACGACGCTCGGACACAATCTGCGGCATGTACGTACTGTATAA
TGGGAATCGGTGGACTTCTTGCTGTGATGATCGCTAGTGTGACCATGCCA
ATGAGACCTACCCTCCTCAACTTTCTCCCTCCTTTCCTTCCTGCCTTCCT
CTCACCTCTCTTCAGGCCTAAATGGGTGGCTTCCATTGTCTTTCTCGGTT
TTCTTGCTCTAGCCATTACAATTGCGGTATCGGTTATCATGGGTTGGAAC
ATGGTCGCGCCACGCGTGCAAATGGTAAGGAGGGAGGAAGAAGCGAGAGC
GTGAGGGAGGGATGGAGGGTGGGGACGAAATGGATTATAACTTCTGAAGA
TGGGACAGTTGAATTCCCTTTTTCTTTCTCTCTGTTCGTCTTGAAGGTAT
CCCTCATCCACTAACACCCTCTTTCCCTCCCTCCAAGGTGAACTTCCAAT
TTCCCCTTCCCTATCCGTATTCGGACGCCACAGGCAGGATCCCCGTCATC
TCCACGCTGCTCCTCTCGAATTTTAACAGGTTTAGAATTACCACCTGGCC
CACCACAATGCAAATCTTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCC
TGGCCACTGCCCCTGTACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGT
CAGCCGATGCAGAGCTTTTTCGATATTTCCAATATCAATGGCGTGGAAGG
AGGCGTGTTTATCTCCAACGCTATCATATCGGTACGACATGGAATACGCT
AGCTTCATGTCCATGCGCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTC
CCTCCCGTTCCCCAGGCCCCGACGAGTCTATGCCCTCGCAATTTTATTTA
CAAGCGCACTACTTGACAACTCATGCATTATTTCCCTTTCAACCCCTCTC
TTTTCTCTCTCCCCCCTCAGGGCGATGTGAACTACATGTACACAACCAGC
ATCATCCGCGTCCGTGCCTGGGCCCTGAACTTCATCCCCGTGACGCGCTC
CTACAAGAGCGACTGCACCATCATGAGGAGGTGGGGTGTCAATCCCGTCA
CCACCAGCGACTGCTTTGGACACTTCATACGGTAGTCGCGTCACGGACAG
TGAATGCCACGGACTTGTCGTTGGTCAAGGGGCAAAGGAGGGAGAGATGA
AGGGAGGGAGGAAACTTCTGGAGTATTTGACTGGGAAAAGAGACAGAAAA
GAGGATCCAGTGACATGACGGAGAGAAGGAGAAAGGAAAAAGAAAAAAGA
CAGATGAATATGAACGAGAAGAAATGAGAAGAAAAAGAAGAGGAGGAGGA
GGAAAAAAGATGAAGAAGAAGGAAGGGGAGGAGAAGGGAAAGAAGAAGAA
AAAAGAAAAAGAAGAGAGAGAATAAGAGGGAGAGGAAGAGGAAGTGAAAG
CGAGGAGGACGAAGAGAGAGAGGAAGAGGACAAAAGTATCTACTGTCGAG
AGAGGATGAAAGTAACTACTGTTGCCCTAAGCAAGTGGGGCAATGATGCC
CTCACTATATAACCAGGCCAGATGTGCTCACTACCACGTACCTACCGGTG
ATTGCTGCATTTGGTTGCCAGGGAGAGACAAAGGGAGGAAGGGGGGACGG
AGGGACGGAGGGTATGCGGCTTTGAAAGCTTCATAACTCTTATTTCCTGT
GTCCTATGGGAGGACATATACTATTTTACAATTAACTTATGAATTATGTG
AGTGAAGAGAGCGCCAATTATGTATTGATTGAATGAAGACAAAGCAACGC
GTGCAGACAGTTGGGAAAGGATGTCCGGGTGCGACACTTGAAAAAGGGGC
CAGGTTAGCGATTGAGAGAATGTAAGTGAGAGTCAAACGAAGGTGAGAGA
GCGAATGAGCACAGAACGGCGACTGTTCCGCTGGAGAAGGATGCTGCTGC
TGCGGTTGCTGCTACGGCCAGCCCTGTCGCACATCACATGGTGACTGAAG
CGTGGATGCGGAGATCAGCCTTTTGCTCCAGTGCATGAATTCAATGCTCA
AACATCGGGAAGATTGCCGTGGCGTGTCTGTGCTGACTCTCTTGCTTTTT
GATGACGGAAGGGCAAGTTTGATTCGAAGTACTGAGCAGTGAGAGCTATA
CCAAGTGACATAAAAAAAGTTATTTACATATATGTGGTGAAACACGAAAA
GAATAAAGAGAGAAAGACGACTGAAA back to topCoding sequence (CDS) from alignment at scaffold_6:1262789..1265314- >mRNA_3790 ID=mRNA_3790|Name=jgi.p|Nanoce1779_2|583456|organism=Nannochloropsis oceanica|type=CDS|length=3612bp|location=Sequence derived from alignment at scaffold_6:1262789..1265314- (Nannochloropsis oceanica)
GGCGATGTGAACTACATGTACACAACCAGCATCATCCGCGTCCGTGCCTG
GGCCCTGAACTTCATCCCCGTGACGCGCTCCTACAAGAGCGACTGCACCA
TCATGAGGAGGTGGGGTGTCAATCCCGTCACCACCAGCGACTGCTTTGGA
CACTTCATACGGTAGGTGAACTTCCAATTTCCCCTTCCCTATCCGTATTC
GGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTGCTCCTCTCGAATT
TTAACAGGTTTAGAATTACCACCTGGCCCACCACAATGCAAATCTTCGCC
CTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTGCCCCTGTACAGTT
TATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATGCAGAGCTTTTTCG
ATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTTTATCTCCAACGCT
ATCATATCGGCCTAAATGGGTGGCTTCCATTGTCTTTCTCGGTTTTCTTG
CTCTAGCCATTACAATTGCGGTATCGGTTATCATGGGTTGGAACATGGTC
GCGCCACGCGTGCAAATGATGTCCTCGCGAAGGCACTATTCAGATGAGTT
GCCCTCCTCTATGCACGCCCACACCGCTGTCTTCACGGATGAGGAGATGG
GCGGCGAGAGTAGCAACACCGCCAACACAAAGGTGAATCCTAACAGCCTT
GGCAGCCCTCGGAGCCATCAAAATTATGACGGCAACGCCGGCAAGTGGGT
GGATGGGCGTTCCTCCCGCCTGCCATGGGACGACGCCGACAGGGAGTATT
ATCGACCCAGTCCAACCCCACGCCATGTGCCATCAACCACCAACAACTTC
GAGATACGGGCCCTTCCGGAGAGAGAACGACGCTCGGACACAATCTGCGG
CATGGCGATGTGAACTACATGTACACAACCAGCATCATCCGCGTCCGTGC
CTGGGCCCTGAACTTCATCCCCGTGACGCGCTCCTACAAGAGCGACTGCA
CCATCATGAGGAGGTGGGGTGTCAATCCCGTCACCACCAGCGACTGCTTT
GGACACTTCATACGGTAGGTGAACTTCCAATTTCCCCTTCCCTATCCGTA
TTCGGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTGCTCCTCTCGA
ATTTTAACAGGTTTAGAATTACCACCTGGCCCACCACAATGCAAATCTTC
GCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTGCCCCTGTACA
GTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATGCAGAGCTTTT
TCGATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTTTATCTCCAAC
GCTATCATATCGGCCTAAATGGGTGGCTTCCATTGTCTTTCTCGGTTTTC
TTGCTCTAGCCATTACAATTGCGGTATCGGTTATCATGGGTTGGAACATG
GTCGCGCCACGCGTGCAAATGATGTCCTCGCGAAGGCACTATTCAGATGA
GTTGCCCTCCTCTATGCACGCCCACACCGCTGTCTTCACGGATGAGGAGA
TGGGCGGCGAGAGTAGCAACACCGCCAACACAAAGGTGAATCCTAACAGC
CTTGGCAGCCCTCGGAGCCATCAAAATTATGACGGCAACGCCGGCAAGTG
GGTGGATGGGCGTTCCTCCCGCCTGCCATGGGACGACGCCGACAGGGAGT
ATTATCGACCCAGTCCAACCCCACGCCATGTGCCATCAACCACCAACAAC
TTCGAGATACGGGCCCTTCCGGAGAGAGAACGACGCTCGGACACAATCTG
CGGCATGGCGATGTGAACTACATGTACACAACCAGCATCATCCGCGTCCG
TGCCTGGGCCCTGAACTTCATCCCCGTGACGCGCTCCTACAAGAGCGACT
GCACCATCATGAGGAGGTGGGGTGTCAATCCCGTCACCACCAGCGACTGC
TTTGGACACTTCATACGGTAGGTGAACTTCCAATTTCCCCTTCCCTATCC
GTATTCGGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTGCTCCTCT
CGAATTTTAACAGGTTTAGAATTACCACCTGGCCCACCACAATGCAAATC
TTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTGCCCCTGT
ACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATGCAGAGCT
TTTTCGATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTTTATCTCC
AACGCTATCATATCGGCCTAAATGGGTGGCTTCCATTGTCTTTCTCGGTT
TTCTTGCTCTAGCCATTACAATTGCGGTATCGGTTATCATGGGTTGGAAC
ATGGTCGCGCCACGCGTGCAAATGATGTCCTCGCGAAGGCACTATTCAGA
TGAGTTGCCCTCCTCTATGCACGCCCACACCGCTGTCTTCACGGATGAGG
AGATGGGCGGCGAGAGTAGCAACACCGCCAACACAAAGGTGAATCCTAAC
AGCCTTGGCAGCCCTCGGAGCCATCAAAATTATGACGGCAACGCCGGCAA
GTGGGTGGATGGGCGTTCCTCCCGCCTGCCATGGGACGACGCCGACAGGG
AGTATTATCGACCCAGTCCAACCCCACGCCATGTGCCATCAACCACCAAC
AACTTCGAGATACGGGCCCTTCCGGAGAGAGAACGACGCTCGGACACAAT
CTGCGGCATGGCGATGTGAACTACATGTACACAACCAGCATCATCCGCGT
CCGTGCCTGGGCCCTGAACTTCATCCCCGTGACGCGCTCCTACAAGAGCG
ACTGCACCATCATGAGGAGGTGGGGTGTCAATCCCGTCACCACCAGCGAC
TGCTTTGGACACTTCATACGGTAGGTGAACTTCCAATTTCCCCTTCCCTA
TCCGTATTCGGACGCCACAGGCAGGATCCCCGTCATCTCCACGCTGCTCC
TCTCGAATTTTAACAGGTTTAGAATTACCACCTGGCCCACCACAATGCAA
ATCTTCGCCCTCCCTAGCCGCTCCCCCGCCTCCCTCCTGGCCACTGCCCC
TGTACAGTTTATGCAGCTGGCGCCCCATCAGAAGAGTCAGCCGATGCAGA
GCTTTTTCGATATTTCCAATATCAATGGCGTGGAAGGAGGCGTGTTTATC
TCCAACGCTATCATATCGGCCTAAATGGGTGGCTTCCATTGTCTTTCTCG
GTTTTCTTGCTCTAGCCATTACAATTGCGGTATCGGTTATCATGGGTTGG
AACATGGTCGCGCCACGCGTGCAAATGATGTCCTCGCGAAGGCACTATTC
AGATGAGTTGCCCTCCTCTATGCACGCCCACACCGCTGTCTTCACGGATG
AGGAGATGGGCGGCGAGAGTAGCAACACCGCCAACACAAAGGTGAATCCT
AACAGCCTTGGCAGCCCTCGGAGCCATCAAAATTATGACGGCAACGCCGG
CAAGTGGGTGGATGGGCGTTCCTCCCGCCTGCCATGGGACGACGCCGACA
GGGAGTATTATCGACCCAGTCCAACCCCACGCCATGTGCCATCAACCACC
AACAACTTCGAGATACGGGCCCTTCCGGAGAGAGAACGACGCTCGGACAC
AATCTGCGGCAT back to top
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