jgi.p|Nanoce1779_2|577147, mRNA_379 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577147
Unique NamemRNA_379
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length607
Alignment locationscaffold_3:942269..942875 -

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Properties
Property NameValue
TranscriptId577233
TrackFilteredModels2
ProteinId577147
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:942269..942875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577147gene_379Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577147mRNA_379-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_379CDS_379Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_379 ID=mRNA_379|Name=jgi.p|Nanoce1779_2|577147|organism=Nannochloropsis oceanica|type=mRNA|length=607bp
CGTTTGATTCCTGGCAGGTGCCGACTTATTTTCGAGATGTTTCCTTTTTT
TTCTATATTAGCCTTAAGTCTCCATCTTTTTTGGTTTCCATCCTATTCCC
TCGCACCCTTGCTGTCACCTCTACCATGTACATGGCTAACGGATGGGAGC
ATACAGATGCTAAATACGCGCCTTCGTCGTATTGCAGATCCCATCACACT
CAAGCAAAAGAAAGCTATGGTCACATACATGCAAGCACAGACGCACAGGT
GCAAGTCAAGACACAAATCATGCACAAAGCTCAGGCCATGGCATTCAAAG
AGCAATCAAACCAGTGTAATCTTCCCTACCCCCCTCCAACACTTAAATTT
TGAATTTTCGAGGTTCCGACTCCAAGTATCCTATTCTATATGACCCATAA
TCCCAAGTGCACAGTTTCAAATAATTACAGGGAGGCGCACGCCCCAATGT
CACTTATGTCGTCGTCGCCCGCGTCCCCAGTCGTAAAAGCCGTCCACAGC
CATGCCAACACCAGTTGGCAAGACAAGAGTACGAGGCATGCCAAGAAAAT
CGTTGTTATTGGCGCGGGTGCAGCCGGCTTGCATGCAGCGGCCCGTCTGC
GGGCTCG
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protein sequence of jgi.p|Nanoce1779_2|577147

>mRNA_379-protein ID=mRNA_379-protein|Name=jgi.p|Nanoce1779_2|577147|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MFPFFSILALSLHLFWFPSYSLAPLLSPLPCTWLTDGSIQMLNTRLRRIA
DPITLKQKKAMVTYMQAQTHRCKSRHKSCTKLRPWHSKSNQTSVIFPTPL
QHLNFEFSRFRLQVSYSI*
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mRNA from alignment at scaffold_3:942269..942875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_379 ID=mRNA_379|Name=jgi.p|Nanoce1779_2|577147|organism=Nannochloropsis oceanica|type=mRNA|length=607bp|location=Sequence derived from alignment at scaffold_3:942269..942875- (Nannochloropsis oceanica)
CGTTTGATTCCTGGCAGGTGCCGACTTATTTTCGAGATGTTTCCTTTTTT
TTCTATATTAGCCTTAAGTCTCCATCTTTTTTGGTTTCCATCCTATTCCC
TCGCACCCTTGCTGTCACCTCTACCATGTACATGGCTAACGGATGGGAGC
ATACAGATGCTAAATACGCGCCTTCGTCGTATTGCAGATCCCATCACACT
CAAGCAAAAGAAAGCTATGGTCACATACATGCAAGCACAGACGCACAGGT
GCAAGTCAAGACACAAATCATGCACAAAGCTCAGGCCATGGCATTCAAAG
AGCAATCAAACCAGTGTAATCTTCCCTACCCCCCTCCAACACTTAAATTT
TGAATTTTCGAGGTTCCGACTCCAAGTATCCTATTCTATATGACCCATAA
TCCCAAGTGCACAGTTTCAAATAATTACAGGGAGGCGCACGCCCCAATGT
CACTTATGTCGTCGTCGCCCGCGTCCCCAGTCGTAAAAGCCGTCCACAGC
CATGCCAACACCAGTTGGCAAGACAAGAGTACGAGGCATGCCAAGAAAAT
CGTTGTTATTGGCGCGGGTGCAGCCGGCTTGCATGCAGCGGCCCGTCTGC
GGGCTCG
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Coding sequence (CDS) from alignment at scaffold_3:942269..942875-

>mRNA_379 ID=mRNA_379|Name=jgi.p|Nanoce1779_2|577147|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_3:942269..942875- (Nannochloropsis oceanica)
ATGTTTCCTTTTTTTTCTATATTAGCCTTAAGTCTCCATCTTTTTTGGTT
TCCATCCTATTCCCTCGCACCCTTGCTGTCACCTCTACCATGTACATGGC
TAACGGATGGGAGCATACAGATGCTAAATACGCGCCTTCGTCGTATTGCA
GATCCCATCACACTCAAGCAAAAGAAAGCTATGGTCACATACATGCAAGC
ACAGACGCACAGGTGCAAGTCAAGACACAAATCATGCACAAAGCTCAGGC
CATGGCATTCAAAGAGCAATCAAACCAGTGTAATCTTCCCTACCCCCCTC
CAACACTTAAATTTTGAATTTTCGAGGTTCCGACTCCAAGTATCCTATTC
TATATGA
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Synonyms
Publications