jgi.p|Nanoce1779_2|583449, mRNA_3788 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583449
Unique NamemRNA_3788
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length394
Alignment locationscaffold_6:1256018..1256411 +

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Properties
Property NameValue
TranscriptId583535
TrackFilteredModels2
ProteinId583449
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1256018..1256411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583449gene_3788Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583449mRNA_3788-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3788CDS_3788Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3788 ID=mRNA_3788|Name=jgi.p|Nanoce1779_2|583449|organism=Nannochloropsis oceanica|type=mRNA|length=394bp
TGCGCATGTACCTCAACAGATGCATCGGGCTCTCCGTTTAGTCCAGGGGA
CTTGGCTGCCGGGCCTTTGCTTCTCACAGCAGAAACAACATGTTTCGTTT
ACGTGCCTGAACAAGACCAGTGCCCTCCCCAAACCTTTTTACATGCCCCC
CTGTGACATATTACTGCGCACTGAAAGGTCTATACGTATTGTGCCGTTAC
AAGCTTTACCTCCAGCCCGCTCTCTTTTCCACTCCCACTAAGGTCAAAGT
GCCGCACATAGGTGTCACTAAAGCCTCCTCTCCGCACCGACAGTTTGGCG
TGGTTCCGATGGACGCCGCCGTGAGCCGCCAGCCCATTCCTTATCCCCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGA
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protein sequence of jgi.p|Nanoce1779_2|583449

>mRNA_3788-protein ID=mRNA_3788-protein|Name=jgi.p|Nanoce1779_2|583449|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MHRALRLVQGTWLPGLCFSQQKQHVSFTCLNKTSALPKPFYMPPCDILLR
TERSIRIVPLQALPPARSLFHSH*
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mRNA from alignment at scaffold_6:1256018..1256411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3788 ID=mRNA_3788|Name=jgi.p|Nanoce1779_2|583449|organism=Nannochloropsis oceanica|type=mRNA|length=394bp|location=Sequence derived from alignment at scaffold_6:1256018..1256411+ (Nannochloropsis oceanica)
TGCGCATGTACCTCAACAGATGCATCGGGCTCTCCGTTTAGTCCAGGGGA
CTTGGCTGCCGGGCCTTTGCTTCTCACAGCAGAAACAACATGTTTCGTTT
ACGTGCCTGAACAAGACCAGTGCCCTCCCCAAACCTTTTTACATGCCCCC
CTGTGACATATTACTGCGCACTGAAAGGTCTATACGTATTGTGCCGTTAC
AAGCTTTACCTCCAGCCCGCTCTCTTTTCCACTCCCACTAAGGTCAAAGT
GCCGCACATAGGTGTCACTAAAGCCTCCTCTCCGCACCGACAGTTTGGCG
TGGTTCCGATGGACGCCGCCGTGAGCCGCCAGCCCATTCCTTATCCCCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGA
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Coding sequence (CDS) from alignment at scaffold_6:1256018..1256411+

>mRNA_3788 ID=mRNA_3788|Name=jgi.p|Nanoce1779_2|583449|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_6:1256018..1256411+ (Nannochloropsis oceanica)
ATGCATCGGGCTCTCCGTTTAGTCCAGGGGACTTGGCTGCCGGGCCTTTG
CTTCTCACAGCAGAAACAACATGTTTCGTTTACGTGCCTGAACAAGACCA
GTGCCCTCCCCAAACCTTTTTACATGCCCCCCTGTGACATATTACTGCGC
ACTGAAAGGTCTATACGTATTGTGCCGTTACAAGCTTTACCTCCAGCCCG
CTCTCTTTTCCACTCCCACTAA
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Synonyms
Publications