jgi.p|Nanoce1779_2|583447, mRNA_3787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583447
Unique NamemRNA_3787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1025
Alignment locationscaffold_6:1253496..1255881 -

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Properties
Property NameValue
TranscriptId583533
TrackFilteredModels2
ProteinId583447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1253496..1255881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583447gene_3787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583447mRNA_3787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3787CDS_3787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3787 ID=mRNA_3787|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
GTTTTCTGTGGAGAAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCC
TCCACCTTTCCCACTGCTTCTTACACAACACAGCACGCATACACACGAGT
CTGCTTTAATGTGCCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTG
GTGCTGGTCTCTAAAGGCGTGAGTGACGGCGGTCTCTCTTTCTGCACCTC
ATCCTCCTTCCTCCAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTC
ACATCTGCATGCTCCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGC
ACATCACACCGCACACATGTATACAACGGTCTTCCTTTCTTTATTAGCCC
GCCGGATCAGGTTACCGCTGCTGCTTTCGTGCTCCAGCGCCTCGTCCAGC
ACTCCTTCCTTTTTTTTCACCCTCTCTTTCTTTGAACATGGCCGACATTG
TCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGATCCACCGCATCCGC
ATCACTCTGACATCCCTGAACGTGAAGAACTTGGAGAAGGTGTGCGACCT
CCTCAAGAAACGCGCCCTCGACCACAACCAGCACCTCAAGGTGGCGGGAC
CCGTCCGCCTGCCCACCAAGACGCTGAAGATCACGACCCGCAAGTCCCCC
TGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGATGCGCATCCACAA
GCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCACGT
CCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAACTAA
GCCTTGGTAGTGGGCAGGAATGTGTTTGCACGTGCTTTTGGGTCTGCCTT
TCTCTTTCTCCTTCCCTTTCTTATTCGTTTTAACGAAGGTTGGGGTGGGA
GAGCGAGTGAGGCCAAGGATGTGTGCGGGAGAATCGCGAAGCTTGTTCTG
TTTGTGCGGGTAGCCTGCCGAGGCGCTCGAATGAAAGTTGAAAAGACCAA
GAAATAGAAGATGAGATGTGGCTAT
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protein sequence of jgi.p|Nanoce1779_2|583447

>mRNA_3787-protein ID=mRNA_3787-protein|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHL
KVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAV
KHITSIVIEPGVEVEITINN*
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mRNA from alignment at scaffold_6:1253496..1255881-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3787 ID=mRNA_3787|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp|location=Sequence derived from alignment at scaffold_6:1253496..1255881- (Nannochloropsis oceanica)
GTTTTCTGTGGAGAAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCC TCCACCTTTCCCACTGCTTCTTACACAACACAGCACGCATACACACGAGT CTGCTTTAATGTGCCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTG GTGCTGGTCTCTAAAGGCGTGAGTGACGGCGGTCTCTCTTTCTGCACCTC ATCCTCCTTCCTCCAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTC ACATCTGCATGCTCCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGC ACATCACACCGCACACATGTATACAACGGTCTTCCTTTCTTTATTAGCCC GCCGGATCAGGTACGTTAGGACCCGGGGAATGGATGGGTGGGGGGATGGA ATCGTGGAATGAAATGGTGATGAACGGCCTGAGAACTCATGCTTCTCGAA TTCCTCCATCCCTCGCTTGACTCAACACAGGTTACCGCTGCTGCTTTCGT GCTCCAGGTACGTCGAAGGGCATACAGGGATGGAGGAGGAAGGAATGGGG AATAAAGAGCTGCCTCCTGCTTATGCCAAAGGGAGGAAGGGGTGGAGGGG GTCCTGAGCGCCTGCACCATGGGGGACGGGGAGGGGGGGCTGCCTATAGA CCTAGGATTAAAAACGTTAGTTCAAGGCATATCGTCGCCGGTCCCAGAGG GGCCTCCGTGCTCCTGATGCGGACTTATAACTACTTCCTGTGTCGATGAG GTCTCTGCTTGCTGTTAGAGTCTGCGGTGTTTGTGGCATGCATGTAGCAG AGGTTAAGAGAAGGGAGGAAGAGATGGAGGGATGCTTTAAGGTGCTCTTG ACAATTCTCGAGAGTACATTGAGGAGAGTCGTACTTCCTCTTTATAAGGT CTCGTCTTCCGGTAGGACATGGATGGGAATCTATCACTGATTCCTCCCTT CCGTCCTCCCTCCGTTCACTCCTCATCGCCATCCTTAACAGCGCCTCGTC CAGCACTCCTTCCTTTTTTTTCACCCTCTCTTTCTTTGAACATGGCCGAC ATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGGTAGGAAGTGA GGGAGGGAGGGGAGGGGGGGAAGAAAGGAAAGGAATCGAGGGAGTAGTAG GAAAGTTATGGGAAGCGGAGGATTATGCATTTTAAGACGTGGTTTACTCG CACGACCGATACGCGCGGCGAATGAAAATGACGGATGAAAAGGGTTGGGG CGATGGTGGACACGGCCTCGCCGTGTTCCTGCCTCTGGAGGGGCATGTGC TCGACGACAATTACCATGGGCGATTCCCGCCACTAACCTCCACCCCCCGC CCTCCCTGATCCTTCAGATCCACCGCATCCGCATCACTCTGACATCCCTG AACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCCCT CGACCACAACCAGCACCTCAAGGTGGCGGGACCCGTCCGGTAAGAGGGGA GGAAGGGAGAGAGAAAGAGAGGGAAAGAGGGTAGGAGCGATGAGTGAATG GGAGGGCTGAGGGGCTATGAATGCGTTGACTGCTCGAAATCGGAAGCTTG CACTTGGCTAGCCCCAAGTCGAAGAGGCCCAAGACAACACGGCCAAGGTC AGACTGGCACTCGATGGCACGAACGCGGATTCACTCATTACTCCGTGGCA CCCTATTTCCTTCCCTCCCTTCCTCCCTCTCAGCCTGCCCACCAAGACGC TGAAGATCACGACCCGCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGG GACCGCTACCAGGTACTTGCCTTCGAGGAGGACAAAACGAGGGGAGGACG ATGAGGGAAGACAGGATCCATCAGACTTTGTGCAGCGGGTACTGATTGTC GCTTGCCTTCTCGGTTTTCTGACACTGGCGAATAAGCCTCGGAAGAAGCT TCTCTTTACATGCCCACTCACTAACCCCTCCCTCCCTCCCCCCCACCCTT TCCCCCCCTCCCTCTCTCCTTCCCTCTCTCCATTCCTCTTTCCACAGATG CGCATCCACAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTCAA GCACATCACGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCACCA TCAACAACTAAGCCTTGGTAGTGGGCAGGAATGTGTTTGCACGTGCTTTT GGGTCTGCCTTTCTCTTTCTCCTTCCCTTTCTTATTCGTTTTAACGAAGG TTGGGGTGGGAGAGCGAGTGAGGCCAAGGATGTGTGCGGGAGAATCGCGA AGCTTGTTCTGTTTGTGCGGGTAGCCTGCCGAGGCGCTCGAATGAAAGTT GAAAAGACCAAGAAATAGAAGATGAGATGTGGCTAT
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Coding sequence (CDS) from alignment at scaffold_6:1253496..1255881-

>mRNA_3787 ID=mRNA_3787|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_6:1253496..1255881- (Nannochloropsis oceanica)
ATGCGCATCCACAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGT
CAAGCACATCACGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCA
CCATCAACAACTAACCTGCCCACCAAGACGCTGAAGATCACGACCCGCAA
GTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGATCCACC
GCATCCGCATCACTCTGACATCCCTGAACGTGAAGAACTTGGAGAAGGTG
TGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACCAGCACCTCAAGGT
GGCGGGACCCGTCCGATGGCCGACATTGTCAAGCCCAAGGTCCTCGCTGA
GGATGACCAGCAGATGCGCATCCACAAGCGCATCATTGATCTTCACTCCG
CCTCCGATGCTGTCAAGCACATCACGTCCATCGTAATCGAGCCCGGTGTG
GAGGTAGAGATCACCATCAACAACTAACCTGCCCACCAAGACGCTGAAGA
TCACGACCCGCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGC
TACCAGATCCACCGCATCCGCATCACTCTGACATCCCTGAACGTGAAGAA
CTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACC
AGCACCTCAAGGTGGCGGGACCCGTCCGATGGCCGACATTGTCAAGCCCA
AGGTCCTCGCTGAGGATGACCAGCAGATGCGCATCCACAAGCGCATCATT
GATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCACGTCCATCGTAAT
CGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAACTAACCTGCCCACC
AAGACGCTGAAGATCACGACCCGCAAGTCCCCCTGCGGTGAGGGCACCAA
CACGTGGGACCGCTACCAGATCCACCGCATCCGCATCACTCTGACATCCC
TGAACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCC
CTCGACCACAACCAGCACCTCAAGGTGGCGGGACCCGTCCGATGGCCGAC
ATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGATGCGCATCCA
CAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCA
CGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAAC
TAACCTGCCCACCAAGACGCTGAAGATCACGACCCGCAAGTCCCCCTGCG
GTGAGGGCACCAACACGTGGGACCGCTACCAGATCCACCGCATCCGCATC
ACTCTGACATCCCTGAACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCT
CAAGAAACGCGCCCTCGACCACAACCAGCACCTCAAGGTGGCGGGACCCG
TCCGATGGCCGACATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGC
AG
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Synonyms
Publications