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Properties
Property Name | Value |
TranscriptId | 583533 |
Track | FilteredModels2 |
ProteinId | 583447 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_6 | supercontig | scaffold_6:1253496..1255881 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3787 ID=mRNA_3787|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp GTTTTCTGTGGAGAAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCC TCCACCTTTCCCACTGCTTCTTACACAACACAGCACGCATACACACGAGT CTGCTTTAATGTGCCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTG GTGCTGGTCTCTAAAGGCGTGAGTGACGGCGGTCTCTCTTTCTGCACCTC ATCCTCCTTCCTCCAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTC ACATCTGCATGCTCCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGC ACATCACACCGCACACATGTATACAACGGTCTTCCTTTCTTTATTAGCCC GCCGGATCAGGTTACCGCTGCTGCTTTCGTGCTCCAGCGCCTCGTCCAGC ACTCCTTCCTTTTTTTTCACCCTCTCTTTCTTTGAACATGGCCGACATTG TCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGATCCACCGCATCCGC ATCACTCTGACATCCCTGAACGTGAAGAACTTGGAGAAGGTGTGCGACCT CCTCAAGAAACGCGCCCTCGACCACAACCAGCACCTCAAGGTGGCGGGAC CCGTCCGCCTGCCCACCAAGACGCTGAAGATCACGACCCGCAAGTCCCCC TGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGATGCGCATCCACAA GCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCACGT CCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAACTAA GCCTTGGTAGTGGGCAGGAATGTGTTTGCACGTGCTTTTGGGTCTGCCTT TCTCTTTCTCCTTCCCTTTCTTATTCGTTTTAACGAAGGTTGGGGTGGGA GAGCGAGTGAGGCCAAGGATGTGTGCGGGAGAATCGCGAAGCTTGTTCTG TTTGTGCGGGTAGCCTGCCGAGGCGCTCGAATGAAAGTTGAAAAGACCAA GAAATAGAAGATGAGATGTGGCTAT back to topprotein sequence of jgi.p|Nanoce1779_2|583447 >mRNA_3787-protein ID=mRNA_3787-protein|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp MADIVKPKVLAEDDQQIHRIRITLTSLNVKNLEKVCDLLKKRALDHNQHL KVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAV KHITSIVIEPGVEVEITINN* back to topmRNA from alignment at scaffold_6:1253496..1255881- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3787 ID=mRNA_3787|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp|location=Sequence derived from alignment at scaffold_6:1253496..1255881- (Nannochloropsis oceanica) GTTTTCTGTGGAGAAAAGAGAAGAGCGACAGAATGCATGCCGCCCTCGCC
TCCACCTTTCCCACTGCTTCTTACACAACACAGCACGCATACACACGAGT
CTGCTTTAATGTGCCTGACCATACAGGTGTGACCGGTGGTATGCGGTGTG
GTGCTGGTCTCTAAAGGCGTGAGTGACGGCGGTCTCTCTTTCTGCACCTC
ATCCTCCTTCCTCCAGCCAAGCAACGGCAGCCGCATAAGCCTCCTCACTC
ACATCTGCATGCTCCTTTTCCATCTCTTTCTCGTTCTCATCTCCCTTTGC
ACATCACACCGCACACATGTATACAACGGTCTTCCTTTCTTTATTAGCCC
GCCGGATCAGGTACGTTAGGACCCGGGGAATGGATGGGTGGGGGGATGGA
ATCGTGGAATGAAATGGTGATGAACGGCCTGAGAACTCATGCTTCTCGAA
TTCCTCCATCCCTCGCTTGACTCAACACAGGTTACCGCTGCTGCTTTCGT
GCTCCAGGTACGTCGAAGGGCATACAGGGATGGAGGAGGAAGGAATGGGG
AATAAAGAGCTGCCTCCTGCTTATGCCAAAGGGAGGAAGGGGTGGAGGGG
GTCCTGAGCGCCTGCACCATGGGGGACGGGGAGGGGGGGCTGCCTATAGA
CCTAGGATTAAAAACGTTAGTTCAAGGCATATCGTCGCCGGTCCCAGAGG
GGCCTCCGTGCTCCTGATGCGGACTTATAACTACTTCCTGTGTCGATGAG
GTCTCTGCTTGCTGTTAGAGTCTGCGGTGTTTGTGGCATGCATGTAGCAG
AGGTTAAGAGAAGGGAGGAAGAGATGGAGGGATGCTTTAAGGTGCTCTTG
ACAATTCTCGAGAGTACATTGAGGAGAGTCGTACTTCCTCTTTATAAGGT
CTCGTCTTCCGGTAGGACATGGATGGGAATCTATCACTGATTCCTCCCTT
CCGTCCTCCCTCCGTTCACTCCTCATCGCCATCCTTAACAGCGCCTCGTC
CAGCACTCCTTCCTTTTTTTTCACCCTCTCTTTCTTTGAACATGGCCGAC
ATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGGTAGGAAGTGA
GGGAGGGAGGGGAGGGGGGGAAGAAAGGAAAGGAATCGAGGGAGTAGTAG
GAAAGTTATGGGAAGCGGAGGATTATGCATTTTAAGACGTGGTTTACTCG
CACGACCGATACGCGCGGCGAATGAAAATGACGGATGAAAAGGGTTGGGG
CGATGGTGGACACGGCCTCGCCGTGTTCCTGCCTCTGGAGGGGCATGTGC
TCGACGACAATTACCATGGGCGATTCCCGCCACTAACCTCCACCCCCCGC
CCTCCCTGATCCTTCAGATCCACCGCATCCGCATCACTCTGACATCCCTG
AACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCCCT
CGACCACAACCAGCACCTCAAGGTGGCGGGACCCGTCCGGTAAGAGGGGA
GGAAGGGAGAGAGAAAGAGAGGGAAAGAGGGTAGGAGCGATGAGTGAATG
GGAGGGCTGAGGGGCTATGAATGCGTTGACTGCTCGAAATCGGAAGCTTG
CACTTGGCTAGCCCCAAGTCGAAGAGGCCCAAGACAACACGGCCAAGGTC
AGACTGGCACTCGATGGCACGAACGCGGATTCACTCATTACTCCGTGGCA
CCCTATTTCCTTCCCTCCCTTCCTCCCTCTCAGCCTGCCCACCAAGACGC
TGAAGATCACGACCCGCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGG
GACCGCTACCAGGTACTTGCCTTCGAGGAGGACAAAACGAGGGGAGGACG
ATGAGGGAAGACAGGATCCATCAGACTTTGTGCAGCGGGTACTGATTGTC
GCTTGCCTTCTCGGTTTTCTGACACTGGCGAATAAGCCTCGGAAGAAGCT
TCTCTTTACATGCCCACTCACTAACCCCTCCCTCCCTCCCCCCCACCCTT
TCCCCCCCTCCCTCTCTCCTTCCCTCTCTCCATTCCTCTTTCCACAGATG
CGCATCCACAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTCAA
GCACATCACGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCACCA
TCAACAACTAAGCCTTGGTAGTGGGCAGGAATGTGTTTGCACGTGCTTTT
GGGTCTGCCTTTCTCTTTCTCCTTCCCTTTCTTATTCGTTTTAACGAAGG
TTGGGGTGGGAGAGCGAGTGAGGCCAAGGATGTGTGCGGGAGAATCGCGA
AGCTTGTTCTGTTTGTGCGGGTAGCCTGCCGAGGCGCTCGAATGAAAGTT
GAAAAGACCAAGAAATAGAAGATGAGATGTGGCTAT back to topCoding sequence (CDS) from alignment at scaffold_6:1253496..1255881- >mRNA_3787 ID=mRNA_3787|Name=jgi.p|Nanoce1779_2|583447|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at scaffold_6:1253496..1255881- (Nannochloropsis oceanica) ATGCGCATCCACAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGT CAAGCACATCACGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCA CCATCAACAACTAACCTGCCCACCAAGACGCTGAAGATCACGACCCGCAA GTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGCTACCAGATCCACC GCATCCGCATCACTCTGACATCCCTGAACGTGAAGAACTTGGAGAAGGTG TGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACCAGCACCTCAAGGT GGCGGGACCCGTCCGATGGCCGACATTGTCAAGCCCAAGGTCCTCGCTGA GGATGACCAGCAGATGCGCATCCACAAGCGCATCATTGATCTTCACTCCG CCTCCGATGCTGTCAAGCACATCACGTCCATCGTAATCGAGCCCGGTGTG GAGGTAGAGATCACCATCAACAACTAACCTGCCCACCAAGACGCTGAAGA TCACGACCCGCAAGTCCCCCTGCGGTGAGGGCACCAACACGTGGGACCGC TACCAGATCCACCGCATCCGCATCACTCTGACATCCCTGAACGTGAAGAA CTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCCCTCGACCACAACC AGCACCTCAAGGTGGCGGGACCCGTCCGATGGCCGACATTGTCAAGCCCA AGGTCCTCGCTGAGGATGACCAGCAGATGCGCATCCACAAGCGCATCATT GATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCACGTCCATCGTAAT CGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAACTAACCTGCCCACC AAGACGCTGAAGATCACGACCCGCAAGTCCCCCTGCGGTGAGGGCACCAA CACGTGGGACCGCTACCAGATCCACCGCATCCGCATCACTCTGACATCCC TGAACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCTCAAGAAACGCGCC CTCGACCACAACCAGCACCTCAAGGTGGCGGGACCCGTCCGATGGCCGAC ATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGCAGATGCGCATCCA CAAGCGCATCATTGATCTTCACTCCGCCTCCGATGCTGTCAAGCACATCA CGTCCATCGTAATCGAGCCCGGTGTGGAGGTAGAGATCACCATCAACAAC TAACCTGCCCACCAAGACGCTGAAGATCACGACCCGCAAGTCCCCCTGCG GTGAGGGCACCAACACGTGGGACCGCTACCAGATCCACCGCATCCGCATC ACTCTGACATCCCTGAACGTGAAGAACTTGGAGAAGGTGTGCGACCTCCT CAAGAAACGCGCCCTCGACCACAACCAGCACCTCAAGGTGGCGGGACCCG TCCGATGGCCGACATTGTCAAGCCCAAGGTCCTCGCTGAGGATGACCAGC AG back to top
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