jgi.p|Nanoce1779_2|583444, mRNA_3786 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583444
Unique NamemRNA_3786
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length824
Alignment locationscaffold_6:1252025..1253125 -

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Properties
Property NameValue
TranscriptId583530
TrackFilteredModels2
ProteinId583444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1252025..1253125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583444gene_3786Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583444mRNA_3786-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3786CDS_3786Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3786 ID=mRNA_3786|Name=jgi.p|Nanoce1779_2|583444|organism=Nannochloropsis oceanica|type=mRNA|length=824bp
AGCGCAACCAATGCCCCGCGCCAACAAGGAGCTCTCTCTTTTCCTTTGGG
ACCCTTTCTCAAGGTACATTGCCTCGGTCGCGAACCGCTGGACGTCCCTT
ATCCCTCCTCCGCCACGCCACCCGTCCGATGCGCCGCGCCGTGTGCTCCT
CATCCATGCGCACCCATTGGGCGCTGCCTCTTTTAATGGAGCCTGTTTTA
CCACAGCTCATCATGGCCTTCAAGAGGCAGGGCACGAAGTCAAAACCCTG
AAGCTGTACGAGGATAAATTTCAGCCCCTGATGCAGCCAAGTGATATCAA
GGAGTATTTCAAACCGTTGGCTGAGAGGGACGAGGCAGACGCACCAGACA
AGGCGGCCCTTCTCCGCTATGTGGCCCTTCTAAAGTGGTGTGATTCCTTG
ATCTTTGTCTATCCAACGTGGTGGTATGCCATGCCCGCTATCTTGAAAGG
CTGGATCGAGCGGACATTCGTACCCCACAGCACGTGGACGCTTCCCTCCC
CATCCTCCCCCCCGGCCTCCGTCGTGGGGCTGGTCCCGTGTTTGGAGAAT
ATCAAGAAAGTGGGCGTGATAACGACGTACGGGTCCACCTGGGGTGTGAT
TAGGTATGTGGGAGATCCGGGTAGGAGAATTATTGCCCGGGGGCTTCGGC
CTTTGTTCAGTAGGGAGTGCACGGTGCTATGGCTGGGTCTGTACAACTGT
GACACTGCCACGCAGAAGGCAAGGGAGGGCTTCCTGGCGGAGGTGGAGGC
ATATATGCGGGAGTTTTGAGGGAGGAGGGAGGGTGGAAGGGATGACGGGA
AGAAGGAAAGACTCGACAGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|583444

>mRNA_3786-protein ID=mRNA_3786-protein|Name=jgi.p|Nanoce1779_2|583444|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MPRANKELSLFLWDPFSRYIASVANRWTSLIPPPPRHPSDAPRRVLLIHA
HPLGAASFNGACFTTAHHGLQEAGHEVKTLKLYEDKFQPLMQPSDIKEYF
KPLAERDEADAPDKAALLRYVALLKWCDSLIFVYPTWWYAMPAILKGWIE
RTFVPHSTWTLPSPSSPPASVVGLVPCLENIKKVGVITTYGSTWGVIRYV
GDPGRRIIARGLRPLFSRECTVLWLGLYNCDTATQKAREGFLAEVEAYMR
EF*
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mRNA from alignment at scaffold_6:1252025..1253125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3786 ID=mRNA_3786|Name=jgi.p|Nanoce1779_2|583444|organism=Nannochloropsis oceanica|type=mRNA|length=1101bp|location=Sequence derived from alignment at scaffold_6:1252025..1253125- (Nannochloropsis oceanica)
AGCGCAACCAATGCCCCGCGCCAACAAGGAGCTCTCTCTTTTCCTTTGGG
ACCCTTTCTCAAGGTACATTGCCTCGGTCGCGAACCGCTGGACGTCCCTT
ATCCCTCCTCCGCCACGCCACCCGTCCGATGCGCCGCGCCGTGTGCTCCT
CATCCATGCGCACCCATTGGGCGCTGCCTCTTTTAATGGAGCCTGTTTTA
CCACAGCTCATCATGGCCTTCAAGAGGCAGGGCACGAAGTCAAAACCCTG
AAGCTGTACGAGGATAAATTTCAGCCCCTGATGCAGCCAAGTGATATCAA
GGAGTATTTCAAACCGTTGGCTGAGAGGGACGAGGCAGACGCACCAGACA
AGGCGGCCCTTCTCCGCTATGTGGCCCTTCTAAAGTGGTGTGATTCCTTG
ATCTTTGTCTATCCAACGTGGTGGTATGCCATGGTACGTTGAATAGATTG
GCCCGAGGAGATGGAAACGGAGAGGAGGGGGGAAGAATGGTGGGGTGGAA
GAAAGGACGGGACAGAGAGCGGGCGTTTAGCCGTCAATGTACCGTTAAAC
GTCCTTTTCAAAGCTTATTGGTTGATATTGCTTGTATTTGCTTTTGTATG
TCGCCACTTTCGTGTCACGCCCCTGCAGCAACGCCACCAGCTCTCTCCAT
TTCGCACCTCACTGTCCCTCCTCCTCCTCTCTCCTTCCCTCCCTCCACCC
GACCCCACAGCCCGCTATCTTGAAAGGCTGGATCGAGCGGACATTCGTAC
CCCACAGCACGTGGACGCTTCCCTCCCCATCCTCCCCCCCGGCCTCCGTC
GTGGGGCTGGTCCCGTGTTTGGAGAATATCAAGAAAGTGGGCGTGATAAC
GACGTACGGGTCCACCTGGGGTGTGATTAGGTATGTGGGAGATCCGGGTA
GGAGAATTATTGCCCGGGGGCTTCGGCCTTTGTTCAGTAGGGAGTGCACG
GTGCTATGGCTGGGTCTGTACAACTGTGACACTGCCACGCAGAAGGCAAG
GGAGGGCTTCCTGGCGGAGGTGGAGGCATATATGCGGGAGTTTTGAGGGA
GGAGGGAGGGTGGAAGGGATGACGGGAAGAAGGAAAGACTCGACAGGAAG
G
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Coding sequence (CDS) from alignment at scaffold_6:1252025..1253125-

>mRNA_3786 ID=mRNA_3786|Name=jgi.p|Nanoce1779_2|583444|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_6:1252025..1253125- (Nannochloropsis oceanica)
CCCGCTATCTTGAAAGGCTGGATCGAGCGGACATTCGTACCCCACAGCAC
GTGGACGCTTCCCTCCCCATCCTCCCCCCCGGCCTCCGTCGTGGGGCTGG
TCCCGTGTTTGGAGAATATCAAGAAAGTGGGCGTGATAACGACGTACGGG
TCCACCTGGGGTGTGATTAGGTATGTGGGAGATCCGGGTAGGAGAATTAT
TGCCCGGGGGCTTCGGCCTTTGTTCAGTAGGGAGTGCACGGTGCTATGGC
TGGGTCTGTACAACTGTGACACTGCCACGCAGAAGGCAAGGGAGGGCTTC
CTGGCGGAGGTGGAGGCATATATGCGGGAGTTTTGAATGCCCCGCGCCAA
CAAGGAGCTCTCTCTTTTCCTTTGGGACCCTTTCTCAAGGTACATTGCCT
CGGTCGCGAACCGCTGGACGTCCCTTATCCCTCCTCCGCCACGCCACCCG
TCCGATGCGCCGCGCCGTGTGCTCCTCATCCATGCGCACCCATTGGGCGC
TGCCTCTTTTAATGGAGCCTGTTTTACCACAGCTCATCATGGCCTTCAAG
AGGCAGGGCACGAAGTCAAAACCCTGAAGCTGTACGAGGATAAATTTCAG
CCCCTGATGCAGCCAAGTGATATCAAGGAGTATTTCAAACCGTTGGCTGA
GAGGGACGAGGCAGACGCACCAGACAAGGCGGCCCTTCTCCGCTATGTGG
CCCTTCTAAAGTGGTGTGATTCCTTGATCTTTGTCTATCCAACGTGGTGG
TATGCCATGCCCGCTATCTTGAAAGGCTGGATCGAGCGGACATTCGTACC
CCACAGCACGTGGACGCTTCCCTCCCCATCCTCCCCCCCGGCCTCCGTCG
TGGGGCTGGTCCCGTGTTTGGAGAATATCAAGAAAGTGGGCGTGATAACG
ACGTACGGGTCCACCTGGGGTGTGATTAGGTATGTGGGAGATCCGGGTAG
GAGAATTATTGCCCGGGGGCTTCGGCCTTTGTTCAGTAGGGAGTGCACGG
TGCTATGGCTGGGTCTGTACAACTGTGACACTGCCACGCAGAAGGCAAGG
GAGGGCTTCCTGGCGGAGGTGGAGGCATATATGCGGGAGTTTTGAATGCC
CCGCGCCAACAAGGAGCTCTCTCTTTTCCTTTGGGACCCTTTCTCAAGGT
ACATTGCCTCGGTCGCGAACCGCTGGACGTCCCTTATCCCTCCTCCGCCA
CGCCACCCGTCCGATGCGCCGCGCCGTGTGCTCCTCATCCATGCGCACCC
ATTGGGCGCTGCCTCTTTTAATGGAGCCTGTTTTACCACAGCTCATCATG
GCCTTCAAGAGGCAGGGCACGAAGTCAAAACCCTGAAGCTGTACGAGGAT
AAATTTCAGCCCCTGATGCAGCCAAGTGATATCAAGGAGTATTTCAAACC
GTTGGCTGAGAGGGACGAGGCAGACGCACCAGACAAGGCGGCCCTTCTCC
GCTATGTGGCCCTTCTAAAGTGGTGTGATTCCTTGATCTTTGTCTATCCA
ACGTGGTGGTATGCCATG
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Synonyms
Publications