jgi.p|Nanoce1779_2|583435, mRNA_3783 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583435
Unique NamemRNA_3783
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length553
Alignment locationscaffold_6:1247481..1248033 -

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Properties
Property NameValue
TranscriptId583521
TrackFilteredModels2
ProteinId583435
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1247481..1248033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583435gene_3783Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583435mRNA_3783-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3783CDS_3783Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3783 ID=mRNA_3783|Name=jgi.p|Nanoce1779_2|583435|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
ACAGGATGCACCGCAACTGTCTTTACCACGCCATTCCTTCTGGCTGGCTG
CTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCAATCGTCTTGGCCTT
TTTTGCACACCCTCCACCCACTTTTATCCCTGTTTGGTACGCGCCGCAGC
AGCAATTGCAGCAGCTGCAGCATACACAGACATGCCTATGGTTTGCAGCC
ATAATGTCGACTTCGGACACCACCTACGACCTCCCCCTTCTCGATGATGT
CCGCCGCATGCATCCGCGGGAGCTTTGTAAGCTGCTGACGGAAAACAAAG
AGGATCTAGAACGCCTGCATGCTGTGGGGTTGATGCTTACTTACGGAAGA
AATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTGTCACGCAAAG
TGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCAAGTCAAGGCG
GTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGATAGAGAGACT
GAATAACCGCGTTTTCTCGAAACCACCAATAAGGACTTGGTTGAGGAGCT
TGG
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protein sequence of jgi.p|Nanoce1779_2|583435

>mRNA_3783-protein ID=mRNA_3783-protein|Name=jgi.p|Nanoce1779_2|583435|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MHRNCLYHAIPSGWLLLFFLVLLPPQAIVLAFFAHPPPTFIPVWYAPQQQ
LQQLQHTQTCLWFAAIMSTSDTTYDLPLLDDVRRMHPRELCKLLTENKED
LERLHAVGLMLTYGRNFPSSEPGVDGATVTQSDRLSGTCYGDEMASQGGA
GGDQGLIDRNQDRET
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mRNA from alignment at scaffold_6:1247481..1248033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3783 ID=mRNA_3783|Name=jgi.p|Nanoce1779_2|583435|organism=Nannochloropsis oceanica|type=mRNA|length=553bp|location=Sequence derived from alignment at scaffold_6:1247481..1248033- (Nannochloropsis oceanica)
ACAGGATGCACCGCAACTGTCTTTACCACGCCATTCCTTCTGGCTGGCTG
CTGCTCTTTTTCCTGGTCTTGCTCCCACCCCAGGCAATCGTCTTGGCCTT
TTTTGCACACCCTCCACCCACTTTTATCCCTGTTTGGTACGCGCCGCAGC
AGCAATTGCAGCAGCTGCAGCATACACAGACATGCCTATGGTTTGCAGCC
ATAATGTCGACTTCGGACACCACCTACGACCTCCCCCTTCTCGATGATGT
CCGCCGCATGCATCCGCGGGAGCTTTGTAAGCTGCTGACGGAAAACAAAG
AGGATCTAGAACGCCTGCATGCTGTGGGGTTGATGCTTACTTACGGAAGA
AATTTCCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTGTCACGCAAAG
TGACCGTCTCTCGGGCACATGCTATGGCGACGAAATGGCAAGTCAAGGCG
GTGCGGGAGGAGACCAAGGCCTTATCGACCGAAATCAGGATAGAGAGACT
GAATAACCGCGTTTTCTCGAAACCACCAATAAGGACTTGGTTGAGGAGCT
TGG
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Coding sequence (CDS) from alignment at scaffold_6:1247481..1248033-

>mRNA_3783 ID=mRNA_3783|Name=jgi.p|Nanoce1779_2|583435|organism=Nannochloropsis oceanica|type=CDS|length=497bp|location=Sequence derived from alignment at scaffold_6:1247481..1248033- (Nannochloropsis oceanica)
ATGCACCGCAACTGTCTTTACCACGCCATTCCTTCTGGCTGGCTGCTGCT
CTTTTTCCTGGTCTTGCTCCCACCCCAGGCAATCGTCTTGGCCTTTTTTG
CACACCCTCCACCCACTTTTATCCCTGTTTGGTACGCGCCGCAGCAGCAA
TTGCAGCAGCTGCAGCATACACAGACATGCCTATGGTTTGCAGCCATAAT
GTCGACTTCGGACACCACCTACGACCTCCCCCTTCTCGATGATGTCCGCC
GCATGCATCCGCGGGAGCTTTGTAAGCTGCTGACGGAAAACAAAGAGGAT
CTAGAACGCCTGCATGCTGTGGGGTTGATGCTTACTTACGGAAGAAATTT
CCCGTCTTCGGAACCAGGTGTGGATGGAGCAACTGTCACGCAAAGTGACC
GTCTCTCGGGCACATGCTATGGCGACGAAATGGCAAGTCAAGGCGGTGCG
GGAGGAGACCAAGGCCTTATCGACCGAAATCAGGATAGAGAGACTGA
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Synonyms
Publications