Properties
| Property Name | Value |
|---|
| TranscriptId | 583508 |
| Track | FilteredModels2 |
| ProteinId | 583422 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:1238500..1240774 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3781 ID=mRNA_3781|Name=jgi.p|Nanoce1779_2|583422|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
CAGCATCCAGACTATCTTATTCGTAGGGATTTCAACACCGTGGATGGTCC
TTGGCTGGTCGTTGTCCGTTCTTGCCACTATCGCAGACGGGTTCCACTCC
CCTCGCCGCAAAATCAACAGTTGTTCTTCCGCCTTTATTGTTCTTCTCCT
TCTTCGAGCCTCGATAGTGATGGCTTGGTTCTGTTCCGGCCGCAGCAACA
CGGAGCTTGTCCAGCGCCTGCGTTCTGCCAATGTCATAACTAGTGAACGG
GTGAAGGAGGTATGTGGGAGTCCAGAGCTAGGATTGGGAACGGCGGAAAA
AAGGGGGTAACGGGTACGACTGGCCGACAGCAAGGGGATATGTACTTTCG
AGCAATGATTTGATTGTACGACAACGTGGAAGAAATCAATTGGCATGCTC
CTATCTGACAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCAT
GCTCCGCGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACT
CCCCGCAGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCAC
GCGCACGCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGC
CATGGACGTGGGCTGCGGATCGGGCTATCTTACAGTGGCAATGGGCCGAA
TGGTGGAGCCGAAGGGGCGCGTGGTGGGTATCGATATCGTCAAGCCCCTC
GTTGCTCTCGCCCGCAAGAACATTGCCAAGGCCGATGGGGACTTGCTGGA
GAAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGGCGACAAAG
ACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTGCTTCCATC
CCTCGCTCCCTCGTTGAACAGCTCAAGGTCGGCGGCATTATGATCCTCCC
CGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGGGTGGAGAAGATCA
AAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGAGCTGCTTGGA
GTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCTAGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|583422 >mRNA_3781-protein ID=mRNA_3781-protein|Name=jgi.p|Nanoce1779_2|583422|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MLLSDSLPLLSRSIPYEVMLRVDRANYAPNSAYEDSPQYLGYEQTISAPH
MHAHALELLKDKLVPGATAMDVGCGSGYLTVAMGRMVEPKGRVVGIDIVK
PLVALARKNIAKADGDLLEKGVVTLECQTGWEGDKDKGPYDAIHVGAAAA
SIPRSLVEQLKVGGIMILPVGPEGGNQALIRVEKIKDHGPIEETYVAQEL
LGVRYVPLVRQSPYT* back to topmRNA from alignment at scaffold_6:1238500..1240774- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3781 ID=mRNA_3781|Name=jgi.p|Nanoce1779_2|583422|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp|location=Sequence derived from alignment at scaffold_6:1238500..1240774- (Nannochloropsis oceanica)
CAGCATCCAGACTATCTTATTCGTAGGGATTTCAACACCGTGGATGGTCC
TTGGCTGGTCGTTGTCCGTTCTTGCCACTATCGCAGACGGGTTCCACTCC
CCTCGCCGCAAAATCAACAGTTGTTCTTCCGCCTTTATTGTTCTTCTCCT
TCTTCGAGCCTCGATAGTGATGGCTTGGTTCTGTTCCGGCCGCAGCAACA
CGGAGCTTGTCCAGCGCCTGCGTTCTGCCAATGTCATAACTAGTGAACGG
GTGAAGGAGGTATGTGGGAGTCCAGAGCTAGGATTGGGAACGGCGGAAAA
AAGGGGGTAACGGGTACGACTGGCCGACAGCAAGGGGATATGTACTTTCG
AGCAATGATTTGATTGTACGACAACGTGGAAGAAATCAATTGGCATGCTC
CTATCTGACAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCAT
GCTCCGCGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACT
CCCCGCAGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCAC
GCGCACGCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGT
ACGTATGCTCCTTGTTTACTTTTTCAATTGTAGTTCTTCCTCTCTCTGGG
TCGAATGCGCCTTTAGCGATCTGGTGGCTGTTTACATGCAAATTACCCTG
ACTCTCCTTTCTGCCTTCCCTCCCTCCCTCCCTCCCTCTCTCGTTCCCTC
CTCTCCCTCGCTCCTCAGGCCATGGACGTGGGCTGCGGATCGGGCTATCT
TACAGTGGCAATGGGCCGAATGGTGGAGCCGAAGGGGCGCGTGGTGGGTA
TCGATATCGTCAAGCCCCTCGTTGCTCTCGCCCGCAAGAACATTGCCAAG
GCCGATGGGGACTTGCTGGAGAAAGGTGGGTGTGTGGGTGGGTGGATGAA
AAGTGGGTGGATGAAAGGCTGGTGGATGGATGTTTATGAATGGGGGATAC
AATGGTAGGTGTGGGGGTGTGGGGGTGTGGGGTTGTGGGGGGTGGATGTG
TGGGTGGATGTATCGGTGTGGGGATATAAATATAAATATATATGGGTGTG
GGGATATGAATATAAATATATATGGATGTGGGGATATAAATATAAATATC
TATGTGTGTGGGTGGGTGGGTGTGGGTGGGTGGGTGTGGGGGTGGGTGTG
GGTGTGGGTGTGGGCATGTATCGGTGTGGGGATATAAATATAAATTTATA
TGTGTGTGGGTGGGTGTGGGGGTGTGGATGTGTCGGTGGATGGGTGGGTG
CGTGGTCGGGTGTGGGTGTTGGCATGTATCGGTGTGGGGATGGATGGGTA
GGATGTGTGTTTTGGGTGGGGGGATAGTATGTCTTCGTGTGTGTGAGACA
TCCCTCCCCTCCTCTCTCCCTCCTTTATGAGCTGTGTGCGTCGGAAGCAT
CCCGTTTCTTTCAACCCTTCTTCCCCTGACCCCTGTCCTGCCTTAACTTC
TTCCCTTCTTCCTAACTCCTCTTGCACCTCCTCTCCCTTCAGGAGTGGTC
ACCCTGGAATGCCAGACAGGCTGGGAGGGCGACAAAGACAAGGGGCCTTA
CGACGCTATCCACGTGGGTGCGGCGGCTGCTTCCATCCCTCGCTCCCTCG
TTGAACAGCTCAAGGTAAGCAGCCCCATTCTCCCGCCTCTCATTCTCGGC
CCTTCCCTTGTTCCATCCCTCCACCTTGAGATATTTCTCCTCTCCTTCCC
TCCCCCAATCCCGTCTTTCCGCCCTTCCCACGCTTAGGTCGGCGGCATTA
TGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGGGTG
GAGAAGGTGAGCCGACAGACGCGGAACGAAGAGAGCGCATTCCTTAGGGC
TGTACTCATCCTTCCCTACCTGCCTGTTTCGCTTCCTTCCTCCATCCCTT
CCCTCCCCTCCCCCTTTCCTCCCCCTTCCTCTCTCCCTCTGACCCATTTT
TCAGATCAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTAA
GAAAGCGAAAGGAGATACAAAGCTTCGCTATGGGTGGCCTTCCTCTCCAC
CCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCTCCCGTTCCCTCTTTCCA
GACCCGATTTACTCATGCTCCCTTCCTCAGTATCATCCGGTCTTCTCTCC
CTCCACTCTCTCTACTAGGAGCTGCTTGGAGTGCGCTATGTCCCGCTGGT
CCGTCAGAGCCCTTACACCTAGAGG back to topCoding sequence (CDS) from alignment at scaffold_6:1238500..1240774- >mRNA_3781 ID=mRNA_3781|Name=jgi.p|Nanoce1779_2|583422|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_6:1238500..1240774- (Nannochloropsis oceanica)
GAGCTGCTTGGAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACAC
CTAGATCAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTCG
GCGGCATTATGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTT
ATCCGGGTGGAGAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAG
GGCGACAAAGACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGC
TGCTTCCATCCCTCGCTCCCTCGTTGAACAGCTCAAGGCCATGGACGTGG
GCTGCGGATCGGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCG
AAGGGGCGCGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGC
CCGCAAGAACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGATGCTC
CTATCTGACAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCAT
GCTCCGCGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACT
CCCCGCAGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCAC
GCGCACGCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGA
GCTGCTTGGAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCT
AGATCAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTCGGC
GGCATTATGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTAT
CCGGGTGGAGAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGG
CGACAAAGACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTG
CTTCCATCCCTCGCTCCCTCGTTGAACAGCTCAAGGCCATGGACGTGGGC
TGCGGATCGGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGAA
GGGGCGCGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCCC
GCAAGAACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGATGCTCCT
ATCTGACAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCATGC
TCCGCGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACTCC
CCGCAGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCACGC
GCACGCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGAGC
TGCTTGGAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCTAG
ATCAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTCGGCGG
CATTATGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCC
GGGTGGAGAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGGCG
ACAAAGACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTGCT
TCCATCCCTCGCTCCCTCGTTGAACAGCTCAAGGCCATGGACGTGGGCTG
CGGATCGGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGAAGG
GGCGCGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCCCGC
AAGAACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGATGCTCCTAT
CTGACAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCATGCTC
CGCGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACTCCCC
GCAGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCACGCGC
ACGCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGAGCTG
CTTGGAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCTAGAT
CAAAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTCGGCGGCA
TTATGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGG
GTGGAGAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGGCGAC
AAAGACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTGCTTC
CATCCCTCGCTCCCTCGTTGAACAGCTCAAGGCCATGGACGTGGGCTGCG
GATCGGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGAAGGGG
CGCGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCCCGCAA
GAACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGATGCTCCTATCT
GACAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCATGCTCCG
CGTGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACTCCCCGC
AGTACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCACGCGCAC
GCCTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGAGCTGCT
TGGAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCTAGATCA
AAGACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTCGGCGGCATT
ATGATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGGGT
GGAGAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGGCGACAA
AGACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTGCTTCCA
TCCCTCGCTCCCTCGTTGAACAGCTCAAGGCCATGGACGTGGGCTGCGGA
TCGGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGAAGGGGCG
CGTGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCCCGCAAGA
ACATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGATGCTCCTATCTGA
CAGCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCATGCTCCGCG
TGGACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACTCCCCGCAG
TACCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCACGCGCACGC
CTTGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACTGAGCTGCTTG
GAGTGCGCTATGTCCCGCTGGTCCGTCAGAGCCCTTACACCTAGATCAAA
GACCACGGTCCCATCGAGGAGACGTATGTGGCACAGGTCGGCGGCATTAT
GATCCTCCCCGTGGGTCCTGAGGGCGGCAATCAAGCCCTTATCCGGGTGG
AGAAGGAGTGGTCACCCTGGAATGCCAGACAGGCTGGGAGGGCGACAAAG
ACAAGGGGCCTTACGACGCTATCCACGTGGGTGCGGCGGCTGCTTCCATC
CCTCGCTCCCTCGTTGAACAGCTCAAGGCCATGGACGTGGGCTGCGGATC
GGGCTATCTTACAGTGGCAATGGGCCGAATGGTGGAGCCGAAGGGGCGCG
TGGTGGGTATCGATATCGTCAAGCCCCTCGTTGCTCTCGCCCGCAAGAAC
ATTGCCAAGGCCGATGGGGACTTGCTGGAGAAAGATGCTCCTATCTGACA
GCCTTCCTCTTCTCTCTCGTTCAATTCCTTATGAGGTCATGCTCCGCGTG
GACAGGGCGAACTACGCCCCGAATTCAGCCTACGAGGACTCCCCGCAGTA
CCTTGGCTACGAGCAGACCATTTCCGCGCCGCACATGCACGCGCACGCCT
TGGAGCTGCTGAAGGATAAGCTGGTTCCAGGGGCGACT back to top
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