jgi.p|Nanoce1779_2|583415, mRNA_3780 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583415
Unique NamemRNA_3780
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length514
Alignment locationscaffold_6:1237340..1237929 +

Link to JBrowse

Properties
Property NameValue
TranscriptId583501
TrackFilteredModels2
ProteinId583415
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1237340..1237929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583415gene_3780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583415mRNA_3780-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3780CDS_3780Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3780 ID=mRNA_3780|Name=jgi.p|Nanoce1779_2|583415|organism=Nannochloropsis oceanica|type=mRNA|length=514bp
CAGCATCACTGCAATACAGGCATAGCCTAGAACTGCAAAGCTTGGGGGCC
TTCTCTATCTGAAAGGAGCAAGGGGTACCATCAGCCATGGATGATACGAA
AGTGCAGGTGGACGTGGGACTACACGAAGGTCTTCTCTCCCAATATGCCA
ACCTGCACGAAGAGGTCGCCCCGCGATTTCGCCAGGCAGTTGACGACGTG
CGTGACGGGTTGGAGCTGATGATCGGCCTAGGGGCGTTGGGTGTTGGTCT
TTACACAGTCTCCCGCCTCCTCCATGCCACATACTGGGTCTTGGACCGTC
GGACGGAGAAGAGTACGCGGTGTTGGAAGCAAGTGGCGGCTCTGGTCCTG
GGGACAGTGGTGATTGGCGGGGTGTGTACGTTTGGGGTAAGGATGACAAG
AGTAACTATGCTTGAAGAAAGGCGTGGAGGAGGAAAAAAAGGGAGATAGA
GGAATGGAAAAAAAAATGTTTTGTACGAAATAAATTGTAAAGTTAGAATA
CGTAAATGCGTAAT
back to top

protein sequence of jgi.p|Nanoce1779_2|583415

>mRNA_3780-protein ID=mRNA_3780-protein|Name=jgi.p|Nanoce1779_2|583415|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MDDTKVQVDVGLHEGLLSQYANLHEEVAPRFRQAVDDVRDGLELMIGLGA
LGVGLYTVSRLLHATYWVLDRRTEKSTRCWKQVAALVLGTVVIGGVCTFG
VRMTRVTMLEERRGGGKKGR*
back to top

mRNA from alignment at scaffold_6:1237340..1237929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3780 ID=mRNA_3780|Name=jgi.p|Nanoce1779_2|583415|organism=Nannochloropsis oceanica|type=mRNA|length=590bp|location=Sequence derived from alignment at scaffold_6:1237340..1237929+ (Nannochloropsis oceanica)
CAGCATCACTGCAATACAGGCATAGCCTAGAACTGCAAAGCTTGGGGGCC
TTCTCTATCTGAAAGGAGCAAGGGGTACCATCAGCCATGGATGATGTACG
TACTGAGGAAAGAGTAACTCAACAAAACACTTTGAAACAGGTGCTAACAA
TTCACCCATTCATTCATGCAGACGAAAGTGCAGGTGGACGTGGGACTACA
CGAAGGTCTTCTCTCCCAATATGCCAACCTGCACGAAGAGGTCGCCCCGC
GATTTCGCCAGGCAGTTGACGACGTGCGTGACGGGTTGGAGCTGATGATC
GGCCTAGGGGCGTTGGGTGTTGGTCTTTACACAGTCTCCCGCCTCCTCCA
TGCCACATACTGGGTCTTGGACCGTCGGACGGAGAAGAGTACGCGGTGTT
GGAAGCAAGTGGCGGCTCTGGTCCTGGGGACAGTGGTGATTGGCGGGGTG
TGTACGTTTGGGGTAAGGATGACAAGAGTAACTATGCTTGAAGAAAGGCG
TGGAGGAGGAAAAAAAGGGAGATAGAGGAATGGAAAAAAAAATGTTTTGT
ACGAAATAAATTGTAAAGTTAGAATACGTAAATGCGTAAT
back to top

Coding sequence (CDS) from alignment at scaffold_6:1237340..1237929+

>mRNA_3780 ID=mRNA_3780|Name=jgi.p|Nanoce1779_2|583415|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_6:1237340..1237929+ (Nannochloropsis oceanica)
ATGGATGATACGAAAGTGCAGGTGGACGTGGGACTACACGAAGGTCTTCT
CTCCCAATATGCCAACCTGCACGAAGAGGTCGCCCCGCGATTTCGCCAGG
CAGTTGACGACGTGCGTGACGGGTTGGAGCTGATGATCGGCCTAGGGGCG
TTGGGTGTTGGTCTTTACACAGTCTCCCGCCTCCTCCATGCCACATACTG
GGTCTTGGACCGTCGGACGGAGAAGAGTACGCGGTGTTGGAAGCAAGTGG
CGGCTCTGGTCCTGGGGACAGTGGTGATTGGCGGGGTGTGTACGTTTGGG
GTAAGGATGACAAGAGTAACTATGCTTGAAGAAAGGCGTGGAGGAGGAAA
AAAAGGGAGATAGATGGATGATACGAAAGTGCAGGTGGACGTGGGACTAC
ACGAAGGTCTTCTCTCCCAATATGCCAACCTGCACGAAGAGGTCGCCCCG
CGATTTCGCCAGGCAGTTGACGACGTGCGTGACGGGTTGGAGCTGATGAT
CGGCCTAGGGGCGTTGGGTGTTGGTCTTTACACAGTCTCCCGCCTCCTCC
ATGCCACATACTGGGTCTTGGACCGTCGGACGGAGAAGAGTACGCGGTGT
TGGAAGCAAGTGGCGGCTCTGGTCCTGGGGACAGTGGTGATTGGCGGGGT
GTGTACGTTTGGGGTAAGGATGACAAGAGTAACTATGCTTGAAGAAAGGC
GTGGAGGAGGAAAAAAAGGGAGATAG
back to top
Synonyms
Publications