jgi.p|Nanoce1779_2|583405, mRNA_3779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583405
Unique NamemRNA_3779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1246
Alignment locationscaffold_6:1235052..1237024 -

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Properties
Property NameValue
TranscriptId583491
TrackFilteredModels2
ProteinId583405
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1235052..1237024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583405gene_3779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583405mRNA_3779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3779CDS_3779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3779 ID=mRNA_3779|Name=jgi.p|Nanoce1779_2|583405|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp
ACAGACCCCGCCGCTGCAGCATGACGGTCCTAAAGCGCATCCCCAAGGTA
TTGAGTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGGCATGGCGATGA
AATTGTTCTTGCAGACGCCAATTTCCCCGCCGCCTCTATCGCCTCCCACA
CGCCGGGCGGGCTTGTCAATGCGGACGGCAACGACATTCCTACCTTGCTG
GACGCCATCATGCAGCTTCTGCCCTTGGATGAGACCGCACCGCCTGCCAT
GGTCATGGGCATGATGCCTGAACACACAGCCGCAGGCTGGAAGACGCCCA
TTTGGGATGAATACAAAAAGATCCTAGCTCATGCAGAAGGGAGAGATATT
GCTTTGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGC
GTTTGCCGTAGTGGCGACCGGAGAAACTGCGTTATACGGGAATCTCATTT
TGAAAAAAGGCGTGATCGGCACTTCGAAGTGAATTGCCGACTGTACGGCA
AGGATGGAGGGGCAGTGGAATTTATGGAAAAGAAGCTTATGATAATACTA
CCTCTCACAGTTGGAGTAACGATTGTACATGTGGACTTGTCAAAAAAGAA
AATTTTGGGTTTGAAGCCACGACAGAGGAGAAGTTTATTATTTTTTCATA
AGATAGCTAATTGTCTGCCTGCCTGATGCAGACACAGCAGCCCAGACACC
GCAGCATACATACTTTGGCGCATTGCTTCGCAGCTGGAGTGTTTCCAGGC
GAGATTTTTCGCTGAAACTTGCCATGGGCGGCACATGAATATCGAATTTC
ATACATGCCTTGATTTTGGCACATTGGATCTACATTTATCGGAAAAATTC
AAATTGACTTTTTATCGACACTTGGTAAACTCTTTTGGCAGGCGGTTATC
TACTCATGACGTATATTATACCTTTTATCTTTGTCCCCCAAAATCCATAA
CCTTGGCGGTTTGGTCCTTCGCTATGACCACTTCTATATGATAACGCCAT
CTAGCCTTGATTCCTCCTCTTCCGTCAACCGTTTTTCCGCCTCATCCACT
GTACCCTCCATAAACTCACGCCATTCGTGCTCCCGGCAAAAGCTCCGCTA
TTTTTGGCCAGTATTGACGTATGGGGTGAGGTAGGCGGAGGAAGTGTGGG
AGATGAGGTCATAGGCGGGGGCCACGATCCCAGCTTCGTAGTCGTCCGGG
GCCGACTTCGGGATGGGGGGGGCGAGGGGGAGGGGAAGGGACGCTG
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protein sequence of jgi.p|Nanoce1779_2|583405

>mRNA_3779-protein ID=mRNA_3779-protein|Name=jgi.p|Nanoce1779_2|583405|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
ADGNDIPTLLDAIMQLLPLDETAPPAMVMGMMPEHTAAGWKTPIWDEYKK
ILAHAEGRDIALEGIERFAFYARSKQAFAVVATGETALYGNLILKKGVIG
TSK*
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mRNA from alignment at scaffold_6:1235052..1237024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3779 ID=mRNA_3779|Name=jgi.p|Nanoce1779_2|583405|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp|location=Sequence derived from alignment at scaffold_6:1235052..1237024- (Nannochloropsis oceanica)
ACAGACCCCGCCGCTGCAGCATGACGGTCCTAAAGCGCATCCCCAAGGTA
TTGAGTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGGCATGGCGATGA
AATTGTTCTTGCAGGTACATTGCAAAAGGCGGGGTTCGAGGAAGCCTCCA
ACTTTCTCTCAGGAGGTCGGGATGGAGTGGCCCGCGCAGTGTGCGTGATG
AGCCTCTCCTTTTAGTATCGCATTGCAGAGGGAGGCTCATTATTACACTT
TCAATTGGAAAAGTAACCTTGGTAAATCCCGTGATTTATACGACCTCCCG
CCAATCTCCTGTACCATCTCAGACGCCAATTTCCCCGCCGCCTCTATCGC
CTCCCACACGCCGGGCGGGCTTGTCAATGCGGACGGTGCGTAAGTTACCT
TCCAGCTTTTCAGCCTTCTCCAATCCCTACATGCTTGTTGATCCGACTTC
GCCTCCTCTTATACACATTTTGCGTGCACCCTCAAAGGCAACGACATTCC
TACCTTGCTGGACGCCATCATGCAGCTTCTGCCCTTGGATGAGACCGCAC
CGCCTGCCATGGTCATGGGCATGGTGAGTACGCTTCCTTTTTCTCGCTTT
TTTCTTTCTATGGCTGACTAACGATATCAGAATAGACTGACAGGAGGGAT
TAATGTATCATAATGTTTACGTCGAGATCACTTCTTTTGCTTGGTCCCCG
TTCTCGGCAAGATGCCTGAACACACAGCCGCAGGCTGGAAGACGCCCATT
TGGGATGAATACAAAAAGATCCTAGCTCATGCAGAAGGGAGAGATATTGC
TTTGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGCGT
TTGCCGTAGTGGCGACCGGGTAAGGAGAGGAGAGAGGGAGGGTGAATAGC
TTTTCGGCATCATGTCCAAAAATCACTAGCTAACTCATTCAATCCCTCTC
CTCGTTCATCCATCCACCCAGAGAAACTGCGTTATACGGGAATCTCATTT
TGAAAAAAGGCGTGATCGGCACTTCGAAGTGAATTGCCGACTGTACGGCA
AGGATGGAGGGGCAGTGGAATTTATGGAAAAGAAGCTTATGATAATACTA
CCTCTCACAGTTGGAGTAACGATTGTACATGTGGACTTGTCAAAAAAGAA
AATTTTGGGTTTGAAGCCACGACAGAGGAGAAGTTTATTATTTTTTCATA
AGATAGCTAATTGTCTGCCTGCCTGATGCAGACACAGCAGCCCAGACACC
GCAGCATACATACTTTGGCGCATTGCTTCGCAGCTGGAGTGTTTCCAGGC
GAGATTTTTCGCTGAAACTTGCCATGGGCGGCACATGAATATCGAATTTC
ATACATGCCTTGATTTTGGCACATTGGATCTACATTTATCGGAAAAATTC
AAATTGACTTTTTATCGACACTTGGTAAACTCTTTTGGCAGGCGGTTATC
TACTCATGACGTATATTATACCTTTTATCTTTGTCCCCCAAAATCCATAA
CCTTGGCGGTTTGGTCCTTCGCTATGACCACTTCTATATGATAACGCCAT
CTAGCCTTGATTCCTCCTCTTCCGTCAACCGTTTTTCCGCCTCATCCACT
GTACCCTCCATAAACTCACGCCATTCGTGCTCCCGGCAAAAGCTCCGCTA
TTTTTGGCCAGTATTGACGTATGGGGTGAGGTAGGCGGAGGAAGTGTGGG
AGATGAGGTCATAGGCGGGGGCCACGATCCCAGCTGTGCGAATGTGTAAG
AGGGATTGTGTAGGGATCAAGTAAGTCTTGTCTGCATGTGCGACCTGTTG
ACATCACAGTGTCAAATTGGACAGCTGGCAAGTCCGTTCCTTTCAGTCCT
TTCCTCCCTCACCCCATCACTCACCACCGTCCTGCATAGGTGGAGCGGAG
GGGGGCATACCTTCGTAGTCGTCCGGGGCCGACTTCGGGATGGGGGGGGC
GAGGGGGAGGGGAAGGGACGCTG
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Coding sequence (CDS) from alignment at scaffold_6:1235052..1237024-

>mRNA_3779 ID=mRNA_3779|Name=jgi.p|Nanoce1779_2|583405|organism=Nannochloropsis oceanica|type=CDS|length=2310bp|location=Sequence derived from alignment at scaffold_6:1235052..1237024- (Nannochloropsis oceanica)
AGAAACTGCGTTATACGGGAATCTCATTTTGAAAAAAGGCGTGATCGGCA
CTTCGAAGTGAATGCCTGAACACACAGCCGCAGGCTGGAAGACGCCCATT
TGGGATGAATACAAAAAGATCCTAGCTCATGCAGAAGGGAGAGATATTGC
TTTGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGCGT
TTGCCGTAGTGGCGACCGGGCAACGACATTCCTACCTTGCTGGACGCCAT
CATGCAGCTTCTGCCCTTGGATGAGACCGCACCGCCTGCCATGGTCATGG
GCATGACGCCAATTTCCCCGCCGCCTCTATCGCCTCCCACACGCCGGGCG
GGCTTGTCAATGCGGACGATGACGGTCCTAAAGCGCATCCCCAAGGTATT
GAGTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGGCATGGCGATGAAA
TTGTTCTTGCAGAGAAACTGCGTTATACGGGAATCTCATTTTGAAAAAAG
GCGTGATCGGCACTTCGAAGTGAATGCCTGAACACACAGCCGCAGGCTGG
AAGACGCCCATTTGGGATGAATACAAAAAGATCCTAGCTCATGCAGAAGG
GAGAGATATTGCTTTGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGA
GCAAACAGGCGTTTGCCGTAGTGGCGACCGGGCAACGACATTCCTACCTT
GCTGGACGCCATCATGCAGCTTCTGCCCTTGGATGAGACCGCACCGCCTG
CCATGGTCATGGGCATGACGCCAATTTCCCCGCCGCCTCTATCGCCTCCC
ACACGCCGGGCGGGCTTGTCAATGCGGACGATGACGGTCCTAAAGCGCAT
CCCCAAGGTATTGAGTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGGC
ATGGCGATGAAATTGTTCTTGCAGAGAAACTGCGTTATACGGGAATCTCA
TTTTGAAAAAAGGCGTGATCGGCACTTCGAAGTGAATGCCTGAACACACA
GCCGCAGGCTGGAAGACGCCCATTTGGGATGAATACAAAAAGATCCTAGC
TCATGCAGAAGGGAGAGATATTGCTTTGGAGGGGATAGAGCGGTTTGCCT
TCTATGCAAGGAGCAAACAGGCGTTTGCCGTAGTGGCGACCGGGCAACGA
CATTCCTACCTTGCTGGACGCCATCATGCAGCTTCTGCCCTTGGATGAGA
CCGCACCGCCTGCCATGGTCATGGGCATGACGCCAATTTCCCCGCCGCCT
CTATCGCCTCCCACACGCCGGGCGGGCTTGTCAATGCGGACGATGACGGT
CCTAAAGCGCATCCCCAAGGTATTGAGTCCGCGCTTGCTGCACGTTTTGG
CCAGCATGGGGCATGGCGATGAAATTGTTCTTGCAGAGAAACTGCGTTAT
ACGGGAATCTCATTTTGAAAAAAGGCGTGATCGGCACTTCGAAGTGAATG
CCTGAACACACAGCCGCAGGCTGGAAGACGCCCATTTGGGATGAATACAA
AAAGATCCTAGCTCATGCAGAAGGGAGAGATATTGCTTTGGAGGGGATAG
AGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGCGTTTGCCGTAGTGGCG
ACCGGGCAACGACATTCCTACCTTGCTGGACGCCATCATGCAGCTTCTGC
CCTTGGATGAGACCGCACCGCCTGCCATGGTCATGGGCATGACGCCAATT
TCCCCGCCGCCTCTATCGCCTCCCACACGCCGGGCGGGCTTGTCAATGCG
GACGATGACGGTCCTAAAGCGCATCCCCAAGGTATTGAGTCCGCGCTTGC
TGCACGTTTTGGCCAGCATGGGGCATGGCGATGAAATTGTTCTTGCAGAG
AAACTGCGTTATACGGGAATCTCATTTTGAAAAAAGGCGTGATCGGCACT
TCGAAGTGAATGCCTGAACACACAGCCGCAGGCTGGAAGACGCCCATTTG
GGATGAATACAAAAAGATCCTAGCTCATGCAGAAGGGAGAGATATTGCTT
TGGAGGGGATAGAGCGGTTTGCCTTCTATGCAAGGAGCAAACAGGCGTTT
GCCGTAGTGGCGACCGGGCAACGACATTCCTACCTTGCTGGACGCCATCA
TGCAGCTTCTGCCCTTGGATGAGACCGCACCGCCTGCCATGGTCATGGGC
ATGACGCCAATTTCCCCGCCGCCTCTATCGCCTCCCACACGCCGGGCGGG
CTTGTCAATGCGGACGATGACGGTCCTAAAGCGCATCCCCAAGGTATTGA
GTCCGCGCTTGCTGCACGTTTTGGCCAGCATGGGGCATGGCGATGAAATT
GTTCTTGCAG
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Synonyms
Publications